Publications by authors named "Christian D Haudenschild"

16Publications

Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:
David R Bentley Shankar Balasubramanian Harold P Swerdlow Geoffrey P Smith John Milton Clive G Brown Kevin P Hall Dirk J Evers Colin L Barnes Helen R Bignell Jonathan M Boutell Jason Bryant Richard J Carter R Keira Cheetham Anthony J Cox Darren J Ellis Michael R Flatbush Niall A Gormley Sean J Humphray Leslie J Irving Mirian S Karbelashvili Scott M Kirk Heng Li Xiaohai Liu Klaus S Maisinger Lisa J Murray Bojan Obradovic Tobias Ost Michael L Parkinson Mark R Pratt Isabelle M J Rasolonjatovo Mark T Reed Roberto Rigatti Chiara Rodighiero Mark T Ross Andrea Sabot Subramanian V Sankar Aylwyn Scally Gary P Schroth Mark E Smith Vincent P Smith Anastassia Spiridou Peta E Torrance Svilen S Tzonev Eric H Vermaas Klaudia Walter Xiaolin Wu Lu Zhang Mohammed D Alam Carole Anastasi Ify C Aniebo David M D Bailey Iain R Bancarz Saibal Banerjee Selena G Barbour Primo A Baybayan Vincent A Benoit Kevin F Benson Claire Bevis Phillip J Black Asha Boodhun Joe S Brennan John A Bridgham Rob C Brown Andrew A Brown Dale H Buermann Abass A Bundu James C Burrows Nigel P Carter Nestor Castillo Maria Chiara E Catenazzi Simon Chang R Neil Cooley Natasha R Crake Olubunmi O Dada Konstantinos D Diakoumakos Belen Dominguez-Fernandez David J Earnshaw Ugonna C Egbujor David W Elmore Sergey S Etchin Mark R Ewan Milan Fedurco Louise J Fraser Karin V Fuentes Fajardo W Scott Furey David George Kimberley J Gietzen Colin P Goddard George S Golda Philip A Granieri David E Green David L Gustafson Nancy F Hansen Kevin Harnish Christian D Haudenschild Narinder I Heyer Matthew M Hims Johnny T Ho Adrian M Horgan Katya Hoschler Steve Hurwitz Denis V Ivanov Maria Q Johnson Terena James T A Huw Jones Gyoung-Dong Kang Tzvetana H Kerelska Alan D Kersey Irina Khrebtukova Alex P Kindwall Zoya Kingsbury Paula I Kokko-Gonzales Anil Kumar Marc A Laurent Cynthia T Lawley Sarah E Lee Xavier Lee Arnold K Liao Jennifer A Loch Mitch Lok Shujun Luo Radhika M Mammen John W Martin Patrick G McCauley Paul McNitt Parul Mehta Keith W Moon Joe W Mullens Taksina Newington Zemin Ning Bee Ling Ng Sonia M Novo Michael J O'Neill Mark A Osborne Andrew Osnowski Omead Ostadan Lambros L Paraschos Lea Pickering Andrew C Pike Alger C Pike D Chris Pinkard Daniel P Pliskin Joe Podhasky Victor J Quijano Come Raczy Vicki H Rae Stephen R Rawlings Ana Chiva Rodriguez Phyllida M Roe John Rogers Maria C Rogert Bacigalupo Nikolai Romanov Anthony Romieu Rithy K Roth Natalie J Rourke Silke T Ruediger Eli Rusman Raquel M Sanches-Kuiper Martin R Schenker Josefina M Seoane Richard J Shaw Mitch K Shiver Steven W Short Ning L Sizto Johannes P Sluis Melanie A Smith Jean Ernest Sohna Sohna Eric J Spence Kim Stevens Neil Sutton Lukasz Szajkowski Carolyn L Tregidgo Gerardo Turcatti Stephanie Vandevondele Yuli Verhovsky Selene M Virk Suzanne Wakelin Gregory C Walcott Jingwen Wang Graham J Worsley Juying Yan Ling Yau Mike Zuerlein Jane Rogers James C Mullikin Matthew E Hurles Nick J McCooke John S West Frank L Oaks Peter L Lundberg David Klenerman Richard Durbin Anthony J Smith

Nature 2008 Nov;456(7218):53-9

Illumina Cambridge Ltd. (Formerly Solexa Ltd), Chesterford Research Park, Little Chesterford, Nr Saffron Walden, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1038/nature07517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581791PMC
November 2008

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Nat Methods 2008 Mar 24;5(3):247-52. Epub 2008 Feb 24.

Bovine Functional Genomics Laboratory, United States Department of Agriculture, Agricultural Research Service, 10300 Baltimore Avenue, Beltsville, Maryland 20705, USA.

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http://www.nature.com/articles/nmeth.1185
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http://dx.doi.org/10.1038/nmeth.1185DOI Listing
March 2008

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Nature 2008 Mar 17;452(7184):215-9. Epub 2008 Feb 17.

Department of Molecular, Cell, and Developmental Biology, University of California at Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1038/nature06745DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2377394PMC
March 2008

Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas).

Proc Natl Acad Sci U S A 2007 Feb 2;104(7):2313-8. Epub 2007 Feb 2.

Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-0371, USA.

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http://www.pnas.org/content/104/7/2313.full.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.0610880104
Publisher Site
http://dx.doi.org/10.1073/pnas.0610880104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1790866PMC
February 2007

Use of massively parallel signature sequencing to study genes expressed during the plant defense response.

Methods Mol Biol 2007 ;354:105-19

Department of Plant and Soil Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, USA.

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http://dx.doi.org/10.1385/1-59259-966-4:105DOI Listing
February 2007

Elucidation of the small RNA component of the transcriptome.

Science 2005 Sep;309(5740):1567-9

Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA.

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http://dx.doi.org/10.1126/science.1114112DOI Listing
September 2005

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

Genome Res 2005 Jul;15(7):1007-14

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gr.4041005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1172045PMC
July 2005

The use of MPSS for whole-genome transcriptional analysis in Arabidopsis.

Genome Res 2004 Aug;14(8):1641-53

Department of Plant and Soil Sciences, and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19714, USA.

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http://dx.doi.org/10.1101/gr.2275604DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC509274PMC
August 2004

Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing.

Nat Biotechnol 2004 Aug 11;22(8):1006-11. Epub 2004 Jul 11.

Delaware Biotechnology Institute, 15 Innovation Way, University of Delaware, Newark, Delaware 19714, USA.

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http://dx.doi.org/10.1038/nbt992DOI Listing
August 2004