Chris Mungall

Chris Mungall

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Chris Mungall

Chris Mungall

Publications by authors named "Chris Mungall"

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29Publications

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Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Nucleic Acids Res 2019 Jan;47(D1):D1018-D1027

Monarch Initiative, monarchinitiative.org.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324074PMC
January 2019

MIRO: guidelines for minimum information for the reporting of an ontology.

J Biomed Semantics 2018 01 18;9(1). Epub 2018 Jan 18.

School of Computer Science, University of Manchester, Oxford Road, Manchester, UK.

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http://dx.doi.org/10.1186/s13326-017-0172-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5774126PMC
January 2018

The influence of disease categories on gene candidate predictions from model organism phenotypes.

J Biomed Semantics 2014 3;5(Suppl 1 Proceedings of the Bio-Ontologies Spec Interest G):S4. Epub 2014 Jun 3.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, CB10 1SA Hinxton, UK.

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http://dx.doi.org/10.1186/2041-1480-5-S1-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108905PMC
August 2014

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

J Biomed Semantics 2013 Jan 4;4(1). Epub 2013 Jan 4.

Ontology Engineering Group, School of Computer Science, Technical University of Madrid (UPM), Boadilla del Monte, 28660, Spain.

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http://dx.doi.org/10.1186/2041-1480-4-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3643862PMC
January 2013

Improving ontologies by automatic reasoning and evaluation of logical definitions.

BMC Bioinformatics 2011 Oct 27;12:418. Epub 2011 Oct 27.

Institute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany.

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http://dx.doi.org/10.1186/1471-2105-12-418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224779PMC
October 2011

Mapping between the OBO and OWL ontology languages.

J Biomed Semantics 2011 Mar 7;2 Suppl 1:S3. Epub 2011 Mar 7.

Department of Computer Science, The University of Texas at Austin, Austin, Texas 78701, USA.

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http://dx.doi.org/10.1186/2041-1480-2-S1-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3105495PMC
March 2011

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.

BMC Bioinformatics 2010 Dec 21;11 Suppl 12:S8. Epub 2010 Dec 21.

Department of Biology, Norwegian University of Science and Technology (NTNU), Høgskoleringen 5, N-7491 Trondheim, Norway.

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http://link.springer.com/content/pdf/10.1186%2F1471-2105-11-
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http://www.biomedcentral.com/1471-2105/11/S12/S8
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http://dx.doi.org/10.1186/1471-2105-11-S12-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040534PMC
December 2010

Entity/quality-based logical definitions for the human skeletal phenome using PATO.

Conf Proc IEEE Eng Med Biol Soc 2009 ;2009:7069-72

Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, England.

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http://dx.doi.org/10.1109/IEMBS.2009.5333362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398700PMC
April 2010

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Mamm Genome 2009 Aug 2;20(8):457-61. Epub 2009 Aug 2.

Bioinformatics Group, MRC Harwell, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1007/s00335-009-9208-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759022PMC
August 2009

An improved ontological representation of dendritic cells as a paradigm for all cell types.

BMC Bioinformatics 2009 Feb 25;10:70. Epub 2009 Feb 25.

Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA.

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http://dx.doi.org/10.1186/1471-2105-10-70DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2662812PMC
February 2009

Genome-wide analysis of human disease alleles reveals that their locations are correlated in paralogous proteins.

PLoS Comput Biol 2008 Nov 7;4(11):e1000218. Epub 2008 Nov 7.

Eccles Institute of Human Genetics, University of Utah and School of Medicine, Salt Lake City, Utah, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1000218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2565504PMC
November 2008

Phenotype ontologies: the bridge between genomics and evolution.

Trends Ecol Evol 2007 Jul 9;22(7):345-50. Epub 2007 Apr 9.

Department of Biology, University of South Dakota, Vermillion, SD 57069, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S016953470700104
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http://dx.doi.org/10.1016/j.tree.2007.03.013DOI Listing
July 2007

Relations in biomedical ontologies.

Genome Biol 2005 28;6(5):R46. Epub 2005 Apr 28.

Institute for Formal Ontology and Medical Information Science, Saarland University, D-66041 Saarbrücken, Germany.

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http://dx.doi.org/10.1186/gb-2005-6-5-r46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1175958PMC
May 2006

Large-scale trends in the evolution of gene structures within 11 animal genomes.

PLoS Comput Biol 2006 Mar 3;2(3):e15. Epub 2006 Mar 3.

Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, California, USA.

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http://dx.doi.org/10.1371/journal.pcbi.0020015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1386723PMC
March 2006