Choli Lee

Choli Lee

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Choli Lee

Choli Lee

Publications by authors named "Choli Lee"

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Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells.

Methods 2020 Jan 16;170:61-68. Epub 2019 Sep 16.

Division of Hematology, University of Washington School of Medicine, Seattle, WA, United States; Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2019.09.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949367PMC
January 2020

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Cell 2018 08 2;174(5):1309-1324.e18. Epub 2018 Aug 2.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Brotman Baty Institute for Precision Medicine, Seattle, WA 98195, USA; Howard Hughes Medical Institute, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2018.06.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6158300PMC
August 2018

Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.

Methods 2018 06 31;142:59-73. Epub 2018 Jan 31.

Institute for Stem Cell and Regenerative Medicine, University of Washington, USA; Division of Hematology, Department of Medicine, University of Washington, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2018.01.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993575PMC
June 2018

CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions.

Am J Hum Genet 2017 Aug 14;101(2):192-205. Epub 2017 Jul 14.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Howard Hughes Medical Institute, Seattle, WA 98195, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00029297173024
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http://dx.doi.org/10.1016/j.ajhg.2017.06.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5544381PMC
August 2017

Recurrent somatic loss of TNFRSF14 in classical Hodgkin lymphoma.

Genes Chromosomes Cancer 2016 Mar 9;55(3):278-87. Epub 2015 Dec 9.

Department of Genome Sciences, University of Washington, Seattle, WA.

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http://dx.doi.org/10.1002/gcc.22331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713316PMC
March 2016

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.

PLoS Genet 2015 Jul 31;11(7):e1005413. Epub 2015 Jul 31.

Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America; Department of Laboratory Medicine, University of Washington, Seattle, Washington, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4521703PMC
July 2015

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

Nat Methods 2015 Jan 1;12(1):71-8. Epub 2014 Dec 1.

1] Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington, USA. [2] Division of Hematology, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/nmeth.3205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4281301PMC
January 2015

A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes.

Methods 2012 Nov 6;58(3):277-88. Epub 2012 Jul 6.

Institute for Stem Cell and Regenerative Medicine, University of Washington, USA.

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http://dx.doi.org/10.1016/j.ymeth.2012.06.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477625PMC
November 2012

Capturing native long-range contiguity by in situ library construction and optical sequencing.

Proc Natl Acad Sci U S A 2012 Nov 29;109(46):18749-54. Epub 2012 Oct 29.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1073/pnas.1202680109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3503199PMC
November 2012

Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules.

Nat Methods 2012 Sep 12;9(9):913-5. Epub 2012 Aug 12.

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/nmeth.2137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3433648PMC
September 2012

Biome representational in silico karyotyping.

Genome Res 2011 Apr 10;21(4):626-33. Epub 2011 Feb 10.

Department of Ophthalmology and Visual Science, Washington University, St. Louis, MO 63110, USA.

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http://dx.doi.org/10.1101/gr.115758.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065710PMC
April 2011

A three-dimensional model of the yeast genome.

Nature 2010 May 2;465(7296):363-7. Epub 2010 May 2.

Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington 98195-8056, USA.

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http://www.nature.com/articles/nature08973
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http://dx.doi.org/10.1038/nature08973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874121PMC
May 2010

Parallel, tag-directed assembly of locally derived short sequence reads.

Nat Methods 2010 Feb 17;7(2):119-22. Epub 2010 Jan 17.

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/nmeth.1416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848820PMC
February 2010

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.

Nat Biotechnol 2009 Dec;27(12):1173-5

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/nbt.1589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849652PMC
December 2009