Choel Kim

Choel Kim

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Correction to: Crystal structure of PKG Iβ holoenzyme reveals a trans‑inhibiting dimer assembly.

J Transl Med 2020 Jan 16;18(1):27. Epub 2020 Jan 16.

University of California, San Diego, Medicine, La Jolla, CA, USA.

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http://dx.doi.org/10.1186/s12967-019-02198-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6966794PMC
January 2020

FRET-based cyclic GMP biosensors measure low cGMP concentrations in cardiomyocytes and neurons.

Commun Biol 2019 29;2:394. Epub 2019 Oct 29.

1Department of Pharmacology, Institute of Clinical Medicine, University of Oslo and Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1038/s42003-019-0641-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6820734PMC
October 2019

Structural basis for selective inhibition of human PKG Iα by the balanol-like compound N46.

J Biol Chem 2018 07 16;293(28):10985-10992. Epub 2018 May 16.

From the Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030,

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http://www.jbc.org/lookup/doi/10.1074/jbc.RA118.002427
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http://dx.doi.org/10.1074/jbc.RA118.002427DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052212PMC
July 2018

Neutron Crystallography Detects Differences in Protein Dynamics: Structure of the PKG II Cyclic Nucleotide Binding Domain in Complex with an Activator.

Biochemistry 2018 03 13;57(12):1833-1837. Epub 2018 Mar 13.

Neutron Scattering Division, Neutron Sciences Directorate , Oak Ridge National Laboratory , Oak Ridge , Tennessee 37831 , United States.

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http://dx.doi.org/10.1021/acs.biochem.8b00010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5890435PMC
March 2018

Structural Basis of Analog Specificity in PKG I and II.

ACS Chem Biol 2017 09 22;12(9):2388-2398. Epub 2017 Aug 22.

Structural and Computational Biology and Molecular Biophysics Program, Baylor College of Medicine , Houston, Texas, United States.

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http://dx.doi.org/10.1021/acschembio.7b00369DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896746PMC
September 2017

Crystal structure of cGMP-dependent protein kinase Iβ cyclic nucleotide-binding-B domain : Rp-cGMPS complex reveals an apo-like, inactive conformation.

FEBS Lett 2017 Jan 23;591(1):221-230. Epub 2016 Dec 23.

Structural and Computational Biology and Molecular Biophysics Program, Baylor College of Medicine, Houston, TX, USA.

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http://dx.doi.org/10.1002/1873-3468.12505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407887PMC
January 2017

AMPK and Endothelial Nitric Oxide Synthase Signaling Regulates K-Ras Plasma Membrane Interactions via Cyclic GMP-Dependent Protein Kinase 2.

Mol Cell Biol 2016 12 28;36(24):3086-3099. Epub 2016 Nov 28.

Department of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Medical School, Houston, Texas, USA

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http://dx.doi.org/10.1128/MCB.00365-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5126295PMC
December 2016

Long-Acting Beta Agonists Enhance Allergic Airway Disease.

PLoS One 2015 25;10(11):e0142212. Epub 2015 Nov 25.

Departments of Medicine and Pathology & Immunology, Translational Biology and Molecular Medicine Program, and the Biology of Inflammation Center, Baylor College of Medicine and the Michael E. DeBakey VA Center for Translational Research on Inflammatory Diseases, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142212PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659681PMC
June 2016

Data on the purification and crystallization of the loss-of-function von Willebrand disease variant (p.Gly1324Ser) of the von Willebrand factor A1 domain.

Data Brief 2016 Jun 10;7:1700-1706. Epub 2016 May 10.

Division of Hematology, Departments of Internal Medicine and Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.

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http://dx.doi.org/10.1016/j.dib.2016.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063811PMC
June 2016

Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation.

Structure 2016 05 7;24(5):710-720. Epub 2016 Apr 7.

Department of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2016.03.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4856591PMC
May 2016

Structural Basis of Cyclic Nucleotide Selectivity in cGMP-dependent Protein Kinase II.

J Biol Chem 2016 Mar 14;291(11):5623-33. Epub 2016 Jan 14.

From the Structural and Computational Biology and Molecular Biophysics Program, Department of Pharmacology, and Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030,

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http://www.jbc.org/content/291/11/5623.full.pdf
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http://www.jbc.org/lookup/doi/10.1074/jbc.M115.691303
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http://dx.doi.org/10.1074/jbc.M115.691303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4786703PMC
March 2016

Mutational Constraints on Local Unfolding Inhibit the Rheological Adaptation of von Willebrand Factor.

J Biol Chem 2016 Feb 16;291(8):3848-59. Epub 2015 Dec 16.

From the Division of Hematology, Departments of Internal Medicine and Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota 55905,

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http://dx.doi.org/10.1074/jbc.M115.703850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4759165PMC
February 2016

Mechanism of cAMP Partial Agonism in Protein Kinase G (PKG).

J Biol Chem 2015 Nov 14;290(48):28631-41. Epub 2015 Sep 14.

From the Departments of Chemistry and Chemical Biology and Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S 4M1, Canada,

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http://dx.doi.org/10.1074/jbc.M115.685305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661378PMC
November 2015

Structures of cGMP-Dependent Protein Kinase (PKG) Iα Leucine Zippers Reveal an Interchain Disulfide Bond Important for Dimer Stability.

Biochemistry 2015 Jul 15;54(29):4419-22. Epub 2015 Jul 15.

@Department of Medicine, University of California at San Diego, La Jolla, California 92093, United States.

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http://dx.doi.org/10.1021/acs.biochem.5b00572DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4838416PMC
July 2015

Crystal structures of the carboxyl cGMP binding domain of the Plasmodium falciparum cGMP-dependent protein kinase reveal a novel capping triad crucial for merozoite egress.

PLoS Pathog 2015 Feb 3;11(2):e1004639. Epub 2015 Feb 3.

Department of Pharmacology, Baylor College of Medicine, Houston, Texas, United States of America; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004639DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412288PMC
February 2015

Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: insights for cGMP-dependent protein kinase agonist design.

Biochemistry 2014 Nov 22;53(43):6725-7. Epub 2014 Oct 22.

Verna and Mars McClean Department of Biochemistry and Molecular Biology, Baylor College of Medicine , One Baylor Plaza, Houston, Texas 77004, United States.

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http://dx.doi.org/10.1021/bi501012vDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222537PMC
November 2014

Crystal structure of the cGMP-dependent protein kinase II leucine zipper and Rab11b protein complex reveals molecular details of G-kinase-specific interactions.

J Biol Chem 2014 Sep 28;289(37):25393-403. Epub 2014 Jul 28.

From the Department of Pharmacology, Baylor College of Medicine, Houston, Texas 77030, the Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030

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http://www.jbc.org/content/289/37/25393.full.pdf
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http://www.jbc.org/lookup/doi/10.1074/jbc.M114.575894
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http://dx.doi.org/10.1074/jbc.M114.575894DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162144PMC
September 2014

DIRAS3 regulates the autophagosome initiation complex in dormant ovarian cancer cells.

Autophagy 2014 Jun;10(6):1071-92

Department of Experimental Therapeutics; The University of Texas MD Anderson Cancer Center; Houston, TX USA.

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http://dx.doi.org/10.4161/auto.28577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091169PMC
June 2014

Structural basis for cyclic-nucleotide selectivity and cGMP-selective activation of PKG I.

Structure 2014 Jan 14;22(1):116-24. Epub 2013 Nov 14.

Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2013.09.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019043PMC
January 2014

p75 neurotrophin receptor regulates glucose homeostasis and insulin sensitivity.

Proc Natl Acad Sci U S A 2012 Apr 28;109(15):5838-43. Epub 2012 Mar 28.

Gladstone Institute of Neurological Disease, University of California, San Francisco, CA 94158, USA.

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http://dx.doi.org/10.1073/pnas.1103638109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326459PMC
April 2012

The amino terminus of cGMP-dependent protein kinase Iβ increases the dynamics of the protein's cGMP-binding pockets.

Int J Mass Spectrom 2011 Apr;302(1-3):44-52

Department of Medicine, University of California, San Diego, 9500 Gilman Dr., La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1016/j.ijms.2010.07.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3107041PMC
April 2011

A crystal structure of the cyclic GMP-dependent protein kinase I{beta} dimerization/docking domain reveals molecular details of isoform-specific anchoring.

J Biol Chem 2010 Oct 8;285(43):32684-8. Epub 2010 Sep 8.

Department of Medicine and Cancer Center, University of California, San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1074/jbc.C110.161430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2963381PMC
October 2010

Structure of D-AKAP2:PKA RI complex: insights into AKAP specificity and selectivity.

Structure 2010 Feb;18(2):155-66

Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, MC 0654, La Jolla, CA 92093, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S096921261000007
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http://dx.doi.org/10.1016/j.str.2009.12.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3090270PMC
February 2010

Novel isoform-specific interfaces revealed by PKA RIIbeta holoenzyme structures.

J Mol Biol 2009 Nov 11;393(5):1070-82. Epub 2009 Sep 11.

Departments of Chemistry/Biochemistry and Pharmacology, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093-0654, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435109PMC
http://dx.doi.org/10.1016/j.jmb.2009.09.014DOI Listing
November 2009

Comparative surface geometry of the protein kinase family.

Protein Sci 2009 Oct;18(10):2016-26

Department of Chemistry and Biochemistry, University of California at San Diego, La Jolla, 92093, USA.

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http://dx.doi.org/10.1002/pro.209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786965PMC
October 2009

Signaling through cAMP and cAMP-dependent protein kinase: diverse strategies for drug design.

Biochim Biophys Acta 2008 Jan 12;1784(1):16-26. Epub 2007 Oct 12.

Department of Chemistry and Biochemistry, Howard Hughes Medical Institute, University of California San Diego, La Jolla, CA 92093-0654, USA.

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http://dx.doi.org/10.1016/j.bbapap.2007.10.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561045PMC
January 2008

PKA-I holoenzyme structure reveals a mechanism for cAMP-dependent activation.

Cell 2007 Sep;130(6):1032-43

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0654, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S009286740700955
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http://dx.doi.org/10.1016/j.cell.2007.07.018DOI Listing
September 2007

Structure and dynamics of PKA signaling proteins.

Eur J Cell Biol 2006 Jul 2;85(7):651-4. Epub 2006 May 2.

Department of Chemistry/Biochemistry, Howard Hughes Medical Institute, University of California, Leichtag Biomedical Research Building, Room 412, 9500 Gilman Dr., La Jolla, CA 92093-0654, USA.

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http://dx.doi.org/10.1016/j.ejcb.2006.02.004DOI Listing
July 2006

A comparative study on biosorption characteristics of certain fungi for bromophenol blue dye.

Appl Biochem Biotechnol 2006 Jul;134(1):51-60

Laboratory of Enzyme Technology, College of Natural Science, College of Engineering, Chonbuk National Univ Chonju 561-756, Korea.

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http://link.springer.com/content/pdf/10.1385/ABAB:134:1:51.p
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http://dx.doi.org/10.1385/abab:134:1:51DOI Listing
July 2006

Dynamic binding of PKA regulatory subunit RI alpha.

Structure 2006 Jan;14(1):141-9

Department of Chemistry and Biochemistry, University of California, San Diego, California 92093, USA.

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http://dx.doi.org/10.1016/j.str.2005.09.019DOI Listing
January 2006

Dynamics of signaling by PKA.

Biochim Biophys Acta 2005 Dec 22;1754(1-2):25-37. Epub 2005 Sep 22.

Howard Hughes Medical Institute, Department of Chemistry and Biochemistry and Department of Pharmacology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0654, USA.

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http://dx.doi.org/10.1016/j.bbapap.2005.08.024DOI Listing
December 2005

Crystal structure of a complex between the catalytic and regulatory (RIalpha) subunits of PKA.

Science 2005 Feb;307(5710):690-6

Department of Chemistry and Biochemistry, University of California, San Diego, CA 92093, USA.

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http://dx.doi.org/10.1126/science.1104607DOI Listing
February 2005

The crystal structure of anthranilate phosphoribosyltransferase from the enterobacterium Pectobacterium carotovorum.

FEBS Lett 2002 Jul;523(1-3):239-46

Department of Chemistry/Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1016/s0014-5793(02)02905-8DOI Listing
July 2002