Chia-Chin Wu

Chia-Chin Wu

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Chia-Chin Wu

Chia-Chin Wu

Publications by authors named "Chia-Chin Wu"

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22Publications

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Stress-Strain Response of Cylindrical Rubber Fender under Monotonic and Cyclic Compression.

Authors:
Chia-Chin Wu Yung-Chuan Chiou

Materials (Basel) 2019 Jan 16;12(2). Epub 2019 Jan 16.

Department of Biomechatronic Engineering, National Chiayi University, Chiayi 60004, Taiwan.

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http://dx.doi.org/10.3390/ma12020282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357082PMC
January 2019

Author Correction: Mutations in the SWI/SNF complex induce a targetable dependence on oxidative phosphorylation in lung cancer.

Authors:
Yonathan Lissanu Deribe Yuting Sun Christopher Terranova Fatima Khan Juan Martinez-Ledesma Jason Gay Guang Gao Robert A Mullinax Tin Khor Ningping Feng Yu-Hsi Lin Chia-Chin Wu Claudia Reyes Qian Peng Frederick Robinson Akira Inoue Veena Kochat Chang-Gong Liu John M Asara Cesar Moran Florian Muller Jing Wang Bingliang Fang Vali Papadimitrakopoulou Ignacio I Wistuba Kunal Rai Joseph Marszalek P Andrew Futreal

Nat Med 2018 Oct;24(10):1627

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://www.nature.com/articles/s41591-018-0173-9
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http://dx.doi.org/10.1038/s41591-018-0173-9DOI Listing
October 2018

Mutations in the SWI/SNF complex induce a targetable dependence on oxidative phosphorylation in lung cancer.

Authors:
Yonathan Lissanu Deribe Yuting Sun Christopher Terranova Fatima Khan Juan Martinez-Ledesma Jason Gay Guang Gao Robert A Mullinax Tin Khor Ningping Feng Yu-Hsi Lin Chia-Chin Wu Claudia Reyes Qian Peng Frederick Robinson Akira Inoue Veena Kochat Chang-Gong Liu John M Asara Cesar Moran Florian Muller Jing Wang Bingliang Fang Vali Papadimitrakopoulou Ignacio I Wistuba Kunal Rai Joseph Marszalek P Andrew Futreal

Nat Med 2018 07 11;24(7):1047-1057. Epub 2018 Jun 11.

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://www.nature.com/articles/s41591-018-0019-5
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http://dx.doi.org/10.1038/s41591-018-0019-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6650267PMC
July 2018

FusionPathway: Prediction of pathways and therapeutic targets associated with gene fusions in cancer.

Authors:
Chia-Chin Wu Hannah C Beird Jianhua Zhang P Andrew Futreal

PLoS Comput Biol 2018 07 24;14(7):e1006266. Epub 2018 Jul 24.

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6075785PMC
July 2018

Genomic profiling of dedifferentiated liposarcoma compared to matched well-differentiated liposarcoma reveals higher genomic complexity and a common origin.

Authors:
Hannah C Beird Chia-Chin Wu Davis R Ingram Wei-Lien Wang Asrar Alimohamed Curtis Gumbs Latasha Little Xingzhi Song Barry W Feig Christina L Roland Jianhua Zhang Robert S Benjamin Patrick Hwu Alexander J Lazar P Andrew Futreal Neeta Somaiah

Cold Spring Harb Mol Case Stud 2018 04 2;4(2). Epub 2018 Apr 2.

Department of Sarcoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1101/mcs.a002386DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5880260PMC
April 2018

Generation and testing of clinical-grade exosomes for pancreatic cancer.

Authors:
Mayela Mendt Sushrut Kamerkar Hikaru Sugimoto Kathleen M McAndrews Chia-Chin Wu Mihai Gagea Sujuan Yang Elena V Rodriges Blanko Qian Peng Xiaoyan Ma Joseph R Marszalek Anirban Maitra Cassian Yee Katayoun Rezvani Elizabeth Shpall Valerie S LeBleu Raghu Kalluri

JCI Insight 2018 04 19;3(8). Epub 2018 Apr 19.

Department of Cancer Biology, Metastasis Research Center.

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http://dx.doi.org/10.1172/jci.insight.99263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931131PMC
April 2018

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:
Farshad Farshidfar Siyuan Zheng Marie-Claude Gingras Yulia Newton Juliann Shih A Gordon Robertson Toshinori Hinoue Katherine A Hoadley Ewan A Gibb Jason Roszik Kyle R Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I Ojesina Julian M Hess J Todd Auman Suhn K Rhie Reanne Bowlby Mitesh J Borad Andrew X Zhu Josh M Stuart Chris Sander Rehan Akbani Andrew D Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael S Torbenson David E Kleiner Peter W Laird David A Wheeler Autumn J McRee Oliver F Bathe Jesper B Andersen Nabeel Bardeesy Lewis R Roberts Lawrence N Kwong

Cell Rep 2017 06;19(13):2878-2880

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http://www.cell.com/cell-reports/pdf/S2211-1247(17)30214-0.p
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http://linkinghub.elsevier.com/retrieve/pii/S221112471730787
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http://dx.doi.org/10.1016/j.celrep.2017.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141445PMC
June 2017

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:
Farshad Farshidfar Siyuan Zheng Marie-Claude Gingras Yulia Newton Juliann Shih A Gordon Robertson Toshinori Hinoue Katherine A Hoadley Ewan A Gibb Jason Roszik Kyle R Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I Ojesina Julian M Hess J Todd Auman Suhn K Rhie Reanne Bowlby Mitesh J Borad Andrew X Zhu Josh M Stuart Chris Sander Rehan Akbani Andrew D Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael S Torbenson David E Kleiner Peter W Laird David A Wheeler Autumn J McRee Oliver F Bathe Jesper B Andersen Nabeel Bardeesy Lewis R Roberts Lawrence N Kwong

Cell Rep 2017 03;18(11):2780-2794

Departments of Genomic Medicine, Melanoma Medical Oncology, Bioinformatics and Computational Biology, Pathology, and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.02.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5493145PMC
March 2017

Genomic deletion of malic enzyme 2 confers collateral lethality in pancreatic cancer.

Authors:
Prasenjit Dey Joelle Baddour Florian Muller Chia Chin Wu Huamin Wang Wen-Ting Liao Zangdao Lan Alina Chen Tony Gutschner Yaan Kang Jason Fleming Nikunj Satani Di Zhao Abhinav Achreja Lifeng Yang Jiyoon Lee Edward Chang Giannicola Genovese Andrea Viale Haoqiang Ying Giulio Draetta Anirban Maitra Y Alan Wang Deepak Nagrath Ronald A DePinho

Nature 2017 02 18;542(7639):119-123. Epub 2017 Jan 18.

Department of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature21052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5398413PMC
February 2017

Synthetic vulnerabilities of mesenchymal subpopulations in pancreatic cancer.

Authors:
Giannicola Genovese Alessandro Carugo James Tepper Frederick Scott Robinson Liren Li Maria Svelto Luigi Nezi Denise Corti Rosalba Minelli Piergiorgio Pettazzoni Tony Gutschner Chia-Chin Wu Sahil Seth Kadir Caner Akdemir Elisabetta Leo Samirkumar Amin Marco Dal Molin Haoqiang Ying Lawrence N Kwong Simona Colla Koichi Takahashi Papia Ghosh Virginia Giuliani Florian Muller Prasenjit Dey Shan Jiang Jill Garvey Chang-Gong Liu Jianhua Zhang Timothy P Heffernan Carlo Toniatti Jason B Fleming Michael G Goggins Laura D Wood Alessandro Sgambato Abbas Agaimy Anirban Maitra Charles W M Roberts Huamin Wang Andrea Viale Ronald A DePinho Giulio F Draetta Lynda Chin

Nature 2017 02 8;542(7641):362-366. Epub 2017 Feb 8.

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature21064DOI Listing
February 2017

Truncating PREX2 mutations activate its GEF activity and alter gene expression regulation in NRAS-mutant melanoma.

Authors:
Yonathan Lissanu Deribe Yanxia Shi Kunal Rai Luigi Nezi Samir B Amin Chia-Chin Wu Kadir C Akdemir Mozhdeh Mahdavi Qian Peng Qing Edward Chang Kirsti Hornigold Stefan T Arold Heidi C E Welch Levi A Garraway Lynda Chin

Proc Natl Acad Sci U S A 2016 Mar 16;113(9):E1296-305. Epub 2016 Feb 16.

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030; Institute for Applied Cancer Science (IACS), The University of Texas MD Anderson Cancer Center, Houston, TX 77030;

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http://dx.doi.org/10.1073/pnas.1513801113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4780599PMC
March 2016

Targeting YAP-Dependent MDSC Infiltration Impairs Tumor Progression.

Authors:
Guocan Wang Xin Lu Prasenjit Dey Pingna Deng Chia Chin Wu Shan Jiang Zhuangna Fang Kun Zhao Ramakrishna Konaparthi Sujun Hua Jianhua Zhang Elsa M Li-Ning-Tapia Avnish Kapoor Chang-Jiun Wu Neelay Bhaskar Patel Zhenglin Guo Vandhana Ramamoorthy Trang N Tieu Tim Heffernan Di Zhao Xiaoying Shang Sunada Khadka Pingping Hou Baoli Hu Eun-Jung Jin Wantong Yao Xiaolu Pan Zhihu Ding Yanxia Shi Liren Li Qing Chang Patricia Troncoso Christopher J Logothetis Mark J McArthur Lynda Chin Y Alan Wang Ronald A DePinho

Cancer Discov 2016 Jan 23;6(1):80-95. Epub 2015 Dec 23.

Department of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/2159-8290.CD-15-0224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707102PMC
January 2016

Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival.

Authors:
Berna C Özdemir Tsvetelina Pentcheva-Hoang Julienne L Carstens Xiaofeng Zheng Chia-Chin Wu Tyler R Simpson Hanane Laklai Hikaru Sugimoto Christoph Kahlert Sergey V Novitskiy Ana De Jesus-Acosta Padmanee Sharma Pedram Heidari Umar Mahmood Lynda Chin Harold L Moses Valerie M Weaver Anirban Maitra James P Allison Valerie S LeBleu Raghu Kalluri

Cancer Cell 2015 Dec 14;28(6):831-833. Epub 2015 Dec 14.

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http://dx.doi.org/10.1016/j.ccell.2015.11.002DOI Listing
December 2015

Epithelial-to-mesenchymal transition is dispensable for metastasis but induces chemoresistance in pancreatic cancer.

Authors:
Xiaofeng Zheng Julienne L Carstens Jiha Kim Matthew Scheible Judith Kaye Hikaru Sugimoto Chia-Chin Wu Valerie S LeBleu Raghu Kalluri

Nature 2015 Nov 11;527(7579):525-530. Epub 2015 Nov 11.

Department of Cancer Biology, Metastasis Research Center, University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1038/nature16064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849281PMC
November 2015

Epithelial-to-mesenchymal transition induces cell cycle arrest and parenchymal damage in renal fibrosis.

Authors:
Sara Lovisa Valerie S LeBleu Björn Tampe Hikaru Sugimoto Komal Vadnagara Julienne L Carstens Chia-Chin Wu Yohannes Hagos Birgitta C Burckhardt Tsvetelina Pentcheva-Hoang Hersharan Nischal James P Allison Michael Zeisberg Raghu Kalluri

Nat Med 2015 Sep 3;21(9):998-1009. Epub 2015 Aug 3.

Department of Cancer Biology, Metastasis Research Center, University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1038/nm.3902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587560PMC
September 2015

Targeting vascular pericytes in hypoxic tumors increases lung metastasis via angiopoietin-2.

Authors:
Doruk Keskin Jiha Kim Vesselina G Cooke Chia-Chin Wu Hikaru Sugimoto Chenghua Gu Michele De Palma Raghu Kalluri Valerie S LeBleu

Cell Rep 2015 Feb 19;10(7):1066-81. Epub 2015 Feb 19.

Department of Cancer Biology, Metastasis Research Center, University of Texas MD Anderson Cancer Center, Houston, TX 77054, USA; Division of Matrix Biology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.01.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4342328PMC
February 2015

Genes suppressed by DNA methylation in non-small cell lung cancer reveal the epigenetics of epithelial-mesenchymal transition.

Authors:
Steven H Lin Jing Wang Pierre Saintigny Chia-Chin Wu Uma Giri Jing Zhang Toshi Menju Lixia Diao Lauren Byers John N Weinstein Kevin R Coombes Luc Girard Ritsuko Komaki Ignacio I Wistuba Hiroshi Date John D Minna John V Heymach

BMC Genomics 2014 Dec 8;15:1079. Epub 2014 Dec 8.

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd,, Unit 097, Houston, TX 77030, USA.

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http://dx.doi.org/10.1186/1471-2164-15-1079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298954PMC
December 2014

Depletion of carcinoma-associated fibroblasts and fibrosis induces immunosuppression and accelerates pancreas cancer with reduced survival.

Authors:
Berna C Özdemir Tsvetelina Pentcheva-Hoang Julienne L Carstens Xiaofeng Zheng Chia-Chin Wu Tyler R Simpson Hanane Laklai Hikaru Sugimoto Christoph Kahlert Sergey V Novitskiy Ana De Jesus-Acosta Padmanee Sharma Pedram Heidari Umar Mahmood Lynda Chin Harold L Moses Valerie M Weaver Anirban Maitra James P Allison Valerie S LeBleu Raghu Kalluri

Cancer Cell 2014 Jun 22;25(6):719-34. Epub 2014 May 22.

Department of Cancer Biology, Metastasis Research Center, University of Texas MD Anderson Cancer Center, Houston, TX 77054, USA; Division of Matrix Biology, Department of Medicine, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccr.2014.04.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180632PMC
June 2014

Identification of cancer fusion drivers using network fusion centrality.

Authors:
Chia-Chin Wu Kalpana Kannan Steven Lin Laising Yen Aleksandar Milosavljevic

Bioinformatics 2013 May 16;29(9):1174-81. Epub 2013 Mar 16.

Department of Genomic Medicine, UT MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://bioinformatics.oxfordjournals.org/content/early/2013/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btt131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634186PMC
May 2013

TARGETgene: a tool for identification of potential therapeutic targets in cancer.

Authors:
Chia-Chin Wu David D'Argenio Shahab Asgharzadeh Timothy Triche

PLoS One 2012 31;7(8):e43305. Epub 2012 Aug 31.

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0043305PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432038PMC
February 2013

Prediction of human functional genetic networks from heterogeneous data using RVM-based ensemble learning.

Authors:
Chia-Chin Wu Shahab Asgharzadeh Timothy J Triche David Z D'Argenio

Bioinformatics 2010 Mar 4;26(6):807-13. Epub 2010 Feb 4.

Department of Biomedical Engineering, University of Southern California, Los Angeles, 90089, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832827PMC
March 2010

GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data.

Authors:
Chia-Chin Wu Hsuan-Cheng Huang Hsueh-Fen Juan Shui-Tein Chen

Bioinformatics 2004 Dec 22;20(18):3691-3. Epub 2004 Jul 22.

Institute of Biological Chemistry and Genomics Research Center, Academia Sinica, Taipei, Taiwan.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bth428DOI Listing
December 2004