Chengzhi Liang

Chengzhi Liang

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Chengzhi Liang

Chengzhi Liang

Publications by authors named "Chengzhi Liang"

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30Publications

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Update soybean Zhonghuang 13 genome to a golden reference.

Sci China Life Sci 2019 Sep 21;62(9):1257-1260. Epub 2019 Aug 21.

State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China.

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http://dx.doi.org/10.1007/s11427-019-9822-2DOI Listing
September 2019

Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice.

Science 2019 04 28;364(6437):292-295. Epub 2019 Feb 28.

State Key Laboratory of Plant Cell and Chromosome Engineering, Center for Genome Editing, Institute of Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China.

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http://dx.doi.org/10.1126/science.aaw7166DOI Listing
April 2019

Systematic discovery of novel and valuable plant gene modules by large-scale RNA-seq samples.

Bioinformatics 2019 Feb;35(3):361-364

State Key Laboratory of Plant Genomics, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/bty642DOI Listing
February 2019

Genome structure and evolution of Antirrhinum majus L.

Nat Plants 2019 02 28;5(2):174-183. Epub 2019 Jan 28.

State Key Laboratory of Plant Cell and Chromosome Engineering and National Center of Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

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http://www.nature.com/articles/s41477-018-0349-9
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http://dx.doi.org/10.1038/s41477-018-0349-9DOI Listing
February 2019

Transcriptomics analyses reveal the molecular roadmap and long non-coding RNA landscape of sperm cell lineage development.

Plant J 2018 10 27;96(2):421-437. Epub 2018 Aug 27.

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.

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http://dx.doi.org/10.1111/tpj.14041DOI Listing
October 2018

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

Nat Genet 2018 09 30;50(9):1289-1295. Epub 2018 Jul 30.

State Key Laboratory of Agrobiotechnology and National Maize Improvement Center, Department of Plant Genetics and Breeding, China Agricultural University, Beijing, China.

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http://dx.doi.org/10.1038/s41588-018-0182-0DOI Listing
September 2018

Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.

Theor Appl Genet 2018 Jun 15;131(6):1391-1403. Epub 2018 Mar 15.

Rice Research Institute, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, 611130, Sichuan, People's Republic of China.

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http://dx.doi.org/10.1007/s00122-018-3085-7DOI Listing
June 2018

De novo genome assembly of reveals rapid genome expansion and adaptive evolution.

Commun Biol 2018 29;1:84. Epub 2018 Jun 29.

1State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Yunnan Agricultural University, 650201 Kunming, China.

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http://dx.doi.org/10.1038/s42003-018-0089-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123737PMC
June 2018

The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance.

Mol Plant 2017 09 1;10(9):1224-1237. Epub 2017 Sep 1.

Institute of Crop Germplasm Resources Research, Shanxi Academy of Agricultural Sciences, Taiyuan 030031, China; Key Laboratory of Crop Gene Resources and Germplasm Enhancement on Loess Plateau, Ministry of Agriculture, Taiyuan 030031, China; Shanxi Key Laboratory of Genetic Resources and Genetic Improvement of Minor Crops, Taiyuan 030031, China. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2017.08.013DOI Listing
September 2017

Development and Evaluation of Near-Isogenic Lines with Different Blast Resistance Alleles at the Piz Locus in japonica Rice from the Lower Region of the Yangtze River, China.

Plant Dis 2017 Jul 3;101(7):1283-1291. Epub 2017 May 3.

Lixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou 225009, China; and Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing 210095, China.

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http://dx.doi.org/10.1094/PDIS-12-16-1855-REDOI Listing
July 2017

Sequencing and de novo assembly of a near complete indica rice genome.

Nat Commun 2017 05 4;8:15324. Epub 2017 May 4.

State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 1 Beichen West Road No. 2, Beijing 100101, China.

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http://dx.doi.org/10.1038/ncomms15324DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418594PMC
May 2017

Melatonin Regulates Root Architecture by Modulating Auxin Response in Rice.

Front Plant Sci 2017 7;8:134. Epub 2017 Feb 7.

National Center for Plant Gene Research (Beijing), State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences Beijing, China.

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http://dx.doi.org/10.3389/fpls.2017.00134DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5293752PMC
February 2017

Improving of Rice Blast Resistances in by Pyramiding Major R Genes.

Front Plant Sci 2016 3;7:1918. Epub 2017 Jan 3.

Lixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou - Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing - Institute of Jiangsu Province National Rice Industry Technology System of Yangzhou Comprehensive Experimental Station Yangzhou, China.

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http://dx.doi.org/10.3389/fpls.2016.01918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5206849PMC
January 2017

Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase.

Proc Natl Acad Sci U S A 2016 10 23;113(41):E6026-E6035. Epub 2016 Sep 23.

State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha 410125, China;

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http://dx.doi.org/10.1073/pnas.1610115113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5068331PMC
October 2016

Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids.

Sci Rep 2016 04 25;6:24984. Epub 2016 Apr 25.

State Key Laboratory of Plant Genomics and National Plant Gene Research Centre (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 5 Datun Road, Chaoyang District, 100101 Beijing, China.

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http://dx.doi.org/10.1038/srep24984DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4842955PMC
April 2016

Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq.

BMC Genomics 2016 Mar 8;17:200. Epub 2016 Mar 8.

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Datun Road, Chaoyang District, Beijing, 100101, China.

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http://dx.doi.org/10.1186/s12864-016-2562-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4782325PMC
March 2016

Inhibition of RNA interference and modulation of transposable element expression by cell death in Drosophila.

Genetics 2011 Aug 19;188(4):823-34. Epub 2011 May 19.

Division of Biological Sciences, University of Missouri, Columbia, Missouri 65211, USA.

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http://dx.doi.org/10.1534/genetics.111.128470DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176087PMC
August 2011

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Evidence-based gene predictions in plant genomes.

Genome Res 2009 Oct 18;19(10):1912-23. Epub 2009 Jun 18.

Cold Spring Harbor Laboratory, New York 11724, USA.

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http://dx.doi.org/10.1101/gr.088997.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765265PMC
October 2009

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.

BMC Bioinformatics 2007 Jun 8;8:191. Epub 2007 Jun 8.

Center for Advanced Research in Biotechnology, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/1471-2105-8-191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1913543PMC
June 2007

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.

Rapid Commun Mass Spectrom 2003 ;17(20):2337-42

Department of Computer Science, University of Western Ontario, London, ON N6A 5B7, Canada.

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http://dx.doi.org/10.1002/rcm.1196DOI Listing
January 2004

A lectin-like wheat gene responds systemically to attempted feeding by avirulent first-instar Hessian fly larvae.

J Chem Ecol 2002 Jul;28(7):1411-28

USDA-ARS Crop Production and Pest Control Research Unit, West Lafayette, Indiana 47907, USA.

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July 2002