Chen-Shan Chin

Chen-Shan Chin

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Chen-Shan Chin

Chen-Shan Chin

Publications by authors named "Chen-Shan Chin"

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41Publications

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Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Nat Commun 2019 04 16;10(1):1784. Epub 2019 Apr 16.

The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.

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http://www.nature.com/articles/s41467-018-08148-z
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http://dx.doi.org/10.1038/s41467-018-08148-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467913PMC
April 2019

Scaffolding of long read assemblies using long range contact information.

BMC Genomics 2017 07 12;18(1):527. Epub 2017 Jul 12.

Pacific Biosciences, 94205 Menlo Park, California, USA.

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http://dx.doi.org/10.1186/s12864-017-3879-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5508778PMC
July 2017

Impact of aspirin on clinical outcomes for African American men with prostate cancer undergoing radiation.

Tumori 2016 Jan-Feb;102(1):65-70. Epub 2015 Sep 30.

Department of Veterans Affairs, New York Harbor Healthcare System, Brooklyn, New York - USA.

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http://journals.sagepub.com/doi/full/10.5301/tj.5000424
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http://dx.doi.org/10.5301/tj.5000424DOI Listing
July 2016

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.

Bioinformatics 2016 07 24;32(13):1921-1924. Epub 2016 Feb 24.

Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920115PMC
July 2016

HLA Typing for the Next Generation.

PLoS One 2015 27;10(5):e0127153. Epub 2015 May 27.

Anthony Nolan Research Institute, Royal Free Hospital, London, United Kingdom; UCL Cancer Institute, Royal Free Campus, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127153PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4446346PMC
April 2016

Long-read sequence assembly of the gorilla genome.

Science 2016 Apr;352(6281):aae0344

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1126/science.aae0344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920363PMC
April 2016

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.

Nat Biotechnol 2015 Jun 25;33(6):623-30. Epub 2015 May 25.

National Biodefense Analysis and Countermeasures Center, Frederick, Maryland, USA.

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http://dx.doi.org/10.1038/nbt.3238DOI Listing
June 2015

Assessment of risk of late rectal bleeding for patients with prostate cancer started on anticoagulation before or after radiation treatment.

Anticancer Res 2014 Dec;34(12):7367-72

Department of Veterans Affairs, New York Harbor Healthcare System, Brooklyn, New York, NY, U.S.A. Department of Radiation Oncology, SUNY Downstate Medical Center, Brooklyn, NY, U.S.A.

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December 2014

Concordance Between Prostate Needle Biopsy and Surgical Histopathology in a Primarily African-American Population.

Int J Surg Pathol 2014 Aug 15;22(5):414-9. Epub 2013 Dec 15.

New York Harbor Healthcare System, Brooklyn, NY, USA SUNY Downstate Medical Center, Brooklyn, NY, USA

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http://ijs.sagepub.com/content/22/5/414.full.pdf
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http://ijs.sagepub.com/cgi/doi/10.1177/1066896913513834
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http://dx.doi.org/10.1177/1066896913513834DOI Listing
August 2014

Racial and socioeconomic disparities in the selection of prostate brachytherapy.

J Contemp Brachytherapy 2013 Sep 12;5(3):139-43. Epub 2013 Sep 12.

Department of Veterans Affairs, New York Harbor Healthcare System, Brooklyn, New York ; Department of Radiation Oncology, SUNY Downstate Medical Center, Brooklyn, New York.

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http://dx.doi.org/10.5114/jcb.2013.37563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3797407PMC
September 2013

Fully assembled genome sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992.

Genome Announc 2013 03 21;1(2):e0008113. Epub 2013 Mar 21.

Office of Regulatory Science, Center for Food Safety & Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, USA.

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http://dx.doi.org/10.1128/genomeA.00081-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622996PMC
March 2013

A flexible and efficient template format for circular consensus sequencing and SNP detection.

Nucleic Acids Res 2010 Aug 22;38(15):e159. Epub 2010 Jun 22.

Pacific Biosciences, Menlo Park, CA 94025, USA.

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http://dx.doi.org/10.1093/nar/gkq543DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2926623PMC
August 2010

Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways.

PLoS Biol 2008 Jun;6(6):e146

Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.0060146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2429954PMC
June 2008

Gene expression patterns during adaptation of a helminth parasite to different environmental niches.

Genome Biol 2007 ;8(4):R65

California Institute for Quantitative Biomedical Research (QB3) of the University of California, San Francisco, San Francisco, CA 94158 USA.

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http://dx.doi.org/10.1186/gb-2007-8-4-r65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1896014PMC
November 2007

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Proc Natl Acad Sci U S A 2006 Mar 6;103(11):4192-7. Epub 2006 Mar 6.

Genome Research Facility, National Aeronautics and Space Administration Ames Research Center, Moffet Field, CA 94035, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0507669103
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http://dx.doi.org/10.1073/pnas.0507669103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1389707PMC
March 2006

Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis.

BMC Bioinformatics 2005 Nov 18;6:275. Epub 2005 Nov 18.

Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1186/1471-2105-6-275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326232PMC
November 2005

Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence.

Genome Res 2005 Feb 14;15(2):205-13. Epub 2005 Jan 14.

Department of Biochemistry and Biophysics, University of California, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1101/gr.3243305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546519PMC
February 2005

Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.

Nat Genet 2004 Feb 18;36(2):197-204. Epub 2004 Jan 18.

Program in Neuroscience, University of California, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1038/ng1291DOI Listing
February 2004

Global snapshot of a protein interaction network-a percolation based approach.

Bioinformatics 2003 Dec;19(18):2413-9

Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg339DOI Listing
December 2003

Passive random walkers and riverlike networks on growing surfaces.

Authors:
Chen-Shan Chin

Phys Rev E Stat Nonlin Soft Matter Phys 2002 Aug 12;66(2 Pt 1):021104. Epub 2002 Aug 12.

Department of Physics, University of Washington, P.O. Box 351560, Seattle, Washington 98195-1560, USA.

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http://dx.doi.org/10.1103/PhysRevE.66.021104DOI Listing
August 2002