Charles Auffray

Charles Auffray

UNVERIFIED PROFILE

Are you Charles Auffray?   Register this Author

Register author
Charles Auffray

Charles Auffray

Publications by authors named "Charles Auffray"

Are you Charles Auffray?   Register this Author

100Publications

3558Reads

43Profile Views

Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.

Brief Bioinform 2019 03;20(2):609-623

Charles Auffray European Institute for Systems Biology and Medicine, Lyon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bby025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6556902PMC
March 2019

Ten years of Genome Medicine.

Genome Med 2019 02 15;11(1). Epub 2019 Feb 15.

Dr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Auerbachstraße, 70376, Stuttgart, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13073-019-0618-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376775PMC
February 2019

Human-like layout algorithms for signalling hypergraphs: outlining requirements.

Brief Bioinform 2018 Oct 5. Epub 2018 Oct 5.

European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Université de Lyon,50 Avenue Tony Garnier, Lyon, France.

View Article

Download full-text PDF

Source
https://academic.oup.com/bib/advance-article/doi/10.1093/bib
Publisher Site
http://dx.doi.org/10.1093/bib/bby099DOI Listing
October 2018

AsthmaMap: An expert-driven computational representation of disease mechanisms.

Clin Exp Allergy 2018 08;48(8):916-918

European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Université de Lyon, Lyon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/cea.13211DOI Listing
August 2018

DNA methylation in childhood asthma: an epigenome-wide meta-analysis.

Lancet Respir Med 2018 05 26;6(5):379-388. Epub 2018 Feb 26.

GRIAC research institute Groningen, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands; Department of Pediatric Pulmonology and Pediatric Allergy, Beatrix Children's Hospital, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S2213-2600(18)30052-3DOI Listing
May 2018

Sputum transcriptomics reveal upregulation of IL-1 receptor family members in patients with severe asthma.

J Allergy Clin Immunol 2018 02 18;141(2):560-570. Epub 2017 May 18.

Airways Disease, National Heart & Lung Institute, Imperial College London, and the Biomedical Research Unit, Royal Brompton & Harefield NHS Trust, London, United Kingdom; Priority Research Centre for Healthy Lungs, Hunter Medical Research Institute, University of Newcastle, Newcastle, Australia. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jaci.2017.02.045DOI Listing
February 2018

EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.

J Comput Biol 2017 Oct 14;24(10):969-980. Epub 2016 Sep 14.

1 European Institute for Systems Biology and Medicine (EISBM) , CIRI UMR CNRS 5308, CNRS-ENS-UCBL-INSERM, Université Claude Bernard, Lyon, France .

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/cmb.2016.0095DOI Listing
October 2017

The P4 Health Spectrum - A Predictive, Preventive, Personalized and Participatory Continuum for Promoting Healthspan.

Prog Cardiovasc Dis 2017 Mar - Apr;59(5):506-521. Epub 2016 Aug 18.

College of Applied Health Sciences, University of Illinois at Chicago, Chicago, IL, USA; SARENA Clinic, Medical Center and Research Institute.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pcad.2016.08.002DOI Listing
June 2017

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks.

Bioinformatics 2017 04;33(7):1096-1098

European Institute for Systems Biology and Medicine (EISBM), CIRI CNRS UMR 5308, CNRS-ENS-UCBL-INSERM, Lyon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btw731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408918PMC
April 2017

Mechanisms of the Development of Allergy (MeDALL): Introducing novel concepts in allergy phenotypes.

J Allergy Clin Immunol 2017 02;139(2):388-399

Department of Pediatric Pulmonology and Pediatric Allergology, Beatrix Children's Hospital, GRIAC Research Institute, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jaci.2016.12.940DOI Listing
February 2017

STON: exploring biological pathways using the SBGN standard and graph databases.

BMC Bioinformatics 2016 Dec 5;17(1):494. Epub 2016 Dec 5.

European Institute for Systems Biology and Medicine (EISBM), CIRI UMR 5308, CNRS-ENS-UCBL-INSERM, Université de Lyon, 50 Avenue Tony Garnier, Lyon, 69007, France.

View Article

Download full-text PDF

Source
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/s12859-016-1394-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5139139PMC
December 2016

Systems Medicine: The Future of Medical Genomics, Healthcare, and Wellness.

Methods Mol Biol 2016 ;1386:43-60

European Institute for Systems Biology and Medicine, CNRS-ENS-UCBL, Université de Lyon, 50 Avenue Tony Garnier, Lyon, 69007, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-3283-2_3DOI Listing
October 2016

Integrative systems medicine approaches to identify molecular targets in lymphoid malignancies.

J Transl Med 2016 09 1;14:252. Epub 2016 Sep 1.

Clinical Governance and International Research Activities, Fondazione Policlinico Gemelli, Rome, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12967-016-1018-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5007715PMC
September 2016

Representing and querying disease networks using graph databases.

BioData Min 2016 25;9:23. Epub 2016 Jul 25.

European Institute for Systems Biology and Medicine (EISBM), CIRI UMR CNRS 5308, CNRS-ENS-UCBL-INSERM, Lyon, France.

View Article

Download full-text PDF

Source
http://biodatamining.biomedcentral.com/articles/10.1186/s130
Publisher Site
http://dx.doi.org/10.1186/s13040-016-0102-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4960687PMC
July 2016

DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.

Authors:
Bonnie R Joubert Janine F Felix Paul Yousefi Kelly M Bakulski Allan C Just Carrie Breton Sarah E Reese Christina A Markunas Rebecca C Richmond Cheng-Jian Xu Leanne K Küpers Sam S Oh Cathrine Hoyo Olena Gruzieva Cilla Söderhäll Lucas A Salas Nour Baïz Hongmei Zhang Johanna Lepeule Carlos Ruiz Symen Ligthart Tianyuan Wang Jack A Taylor Liesbeth Duijts Gemma C Sharp Soesma A Jankipersadsing Roy M Nilsen Ahmad Vaez M Daniele Fallin Donglei Hu Augusto A Litonjua Bernard F Fuemmeler Karen Huen Juha Kere Inger Kull Monica Cheng Munthe-Kaas Ulrike Gehring Mariona Bustamante Marie José Saurel-Coubizolles Bilal M Quraishi Jie Ren Jörg Tost Juan R Gonzalez Marjolein J Peters Siri E Håberg Zongli Xu Joyce B van Meurs Tom R Gaunt Marjan Kerkhof Eva Corpeleijn Andrew P Feinberg Celeste Eng Andrea A Baccarelli Sara E Benjamin Neelon Asa Bradman Simon Kebede Merid Anna Bergström Zdenko Herceg Hector Hernandez-Vargas Bert Brunekreef Mariona Pinart Barbara Heude Susan Ewart Jin Yao Nathanaël Lemonnier Oscar H Franco Michael C Wu Albert Hofman Wendy McArdle Pieter Van der Vlies Fahimeh Falahi Matthew W Gillman Lisa F Barcellos Ashish Kumar Magnus Wickman Stefano Guerra Marie-Aline Charles John Holloway Charles Auffray Henning W Tiemeier George Davey Smith Dirkje Postma Marie-France Hivert Brenda Eskenazi Martine Vrijheid Hasan Arshad Josep M Antó Abbas Dehghan Wilfried Karmaus Isabella Annesi-Maesano Jordi Sunyer Akram Ghantous Göran Pershagen Nina Holland Susan K Murphy Dawn L DeMeo Esteban G Burchard Christine Ladd-Acosta Harold Snieder Wenche Nystad Gerard H Koppelman Caroline L Relton Vincent W V Jaddoe Allen Wilcox Erik Melén Stephanie J London

Am J Hum Genet 2016 Apr 31;98(4):680-96. Epub 2016 Mar 31.

National Institute of Environmental Health Sciences, NIH, U.S. Department of Health and Human Services, Research Triangle Park, NC 27709, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ajhg.2016.02.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833289PMC
April 2016

From genomic medicine to precision medicine: highlights of 2015.

Genome Med 2016 Jan 29;8(1):12. Epub 2016 Jan 29.

Dr. Margarete Fischer-Bosch-Institute of Clinical Pharmacology, 70376, Stuttgart, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13073-016-0265-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733269PMC
January 2016

P4 medicine needs P4 education.

Curr Pharm Des 2014 ;20(38):6071-2

Director, Area of Systems Medicine, IRCCS San Raffaele Pisana, Rome, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2174/1381612820666140314145445DOI Listing
June 2015

Autism cornered: network analyses reveal mechanisms of autism spectrum disorders.

Authors:
Charles Auffray

Mol Syst Biol 2014 Dec 30;10:778. Epub 2014 Dec 30.

European Institute for Systems Biology & Medicine CNRS-ENS-UCBL Université de Lyon, Lyon, France.

View Article

Download full-text PDF

Source
http://msb.embopress.org/cgi/doi/10.15252/msb.20145937
Publisher Site
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4300496PMC
http://dx.doi.org/10.15252/msb.20145937DOI Listing
December 2014

Sequence of a complete chicken BG haplotype shows dynamic expansion and contraction of two gene lineages with particular expression patterns.

PLoS Genet 2014 Jun 5;10(6):e1004417. Epub 2014 Jun 5.

Basel Institute for Immunology, Basel, Switzerland; Department of Pathology, University of Cambridge, Cambridge, United Kingdom; Pirbright Institute (formerly Institute for Animal Health), Compton, United Kingdom; Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1004417DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046983PMC
June 2014

2012 highlights in translational 'omics.

Genome Med 2013 31;5(1):10. Epub 2013 Jan 31.

Laboratory of Proteomics and Analytical Technologies, National Cancer Institute at Frederick, Frederick, MD 21702-1201, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gm414DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707050PMC
May 2014

Participatory medicine: a driving force for revolutionizing healthcare.

Genome Med 2013 23;5(12):110. Epub 2013 Dec 23.

European Institute for Systems Biology & Medicine, CNRS-ENS-UCBL, Université de Lyon, 50, Avenue Tony Garnier, 69007, Lyon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gm514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978637PMC
May 2014

Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a.

Biosystems 2013 Oct 3;114(1):64-8. Epub 2013 Jun 3.

Bioinformatics Unit, IRCCS Casa Sollievo della Sofferenza - Mendel Laboratory, Rome, Italy.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S03032647130013
Publisher Site
http://dx.doi.org/10.1016/j.biosystems.2013.05.009DOI Listing
October 2013

The road from systems biology to systems medicine.

Pediatr Res 2013 Apr 11;73(4 Pt 2):502-7. Epub 2013 Jan 11.

Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/pr.2013.4DOI Listing
April 2013

Revolutionizing medicine in the 21st century through systems approaches.

Biotechnol J 2012 Aug 20;7(8):992-1001. Epub 2012 Jul 20.

Institute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109-5234, USA.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/biot.201100306
Publisher Site
http://dx.doi.org/10.1002/biot.201100306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962497PMC
August 2012

Editorial: Systems biology and personalized medicine - the future is now.

Biotechnol J 2012 Aug;7(8):938-9

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/biot.201200242DOI Listing
August 2012

Understanding the complexity of IgE-related phenotypes from childhood to young adulthood: a Mechanisms of the Development of Allergy (MeDALL) seminar.

J Allergy Clin Immunol 2012 Apr 3;129(4):943-54.e4. Epub 2012 Mar 3.

Centre for Research in Environmental Epidemiology, Barcelona, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jaci.2012.01.047DOI Listing
April 2012

Looking back at genomic medicine in 2011.

Genome Med 2012 Jan 30;4(1). Epub 2012 Jan 30.

CNRS Institute of Biological Sciences, European Institute for Systems Biology & Medicine, Claude Bernard University, 69007 Lyon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gm308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334557PMC
January 2012

Mitochondria-cytoskeleton interaction: distribution of β-tubulins in cardiomyocytes and HL-1 cells.

Biochim Biophys Acta 2011 Apr 4;1807(4):458-69. Epub 2011 Feb 4.

INSERM U884, Laboratory of Fundamental and Applied Bioenergetics, Joseph Fourier University, Grenoble, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbabio.2011.01.010DOI Listing
April 2011

Genome Medicine: past, present and future.

Genome Med 2011 Jan 31;3(1). Epub 2011 Jan 31.

Functional Genomics and Systems Biology for Health, CNRS Institute of Biological Sciences, 94801, Villejuif, France.

View Article

Download full-text PDF

Source
http://genomemedicine.biomedcentral.com/articles/10.1186/gm2
Publisher Site
http://dx.doi.org/10.1186/gm220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3092091PMC
January 2011

Predictive, preventive, personalized and participatory medicine: back to the future.

Genome Med 2010 Aug 26;2(8):57. Epub 2010 Aug 26.

Functional Genomics and Systems Biology for Health, CNRS Institute of Biological Sciences, 7 rue Guy Moquet, BP8, 94801 Villejuif cedex, France.

View Article

Download full-text PDF

Source
http://genomemedicine.biomedcentral.com/articles/10.1186/gm1
Publisher Site
http://dx.doi.org/10.1186/gm178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945014PMC
August 2010

An integrative systems biology approach to understanding pulmonary diseases.

Chest 2010 Jun;137(6):1410-6

Functional Genomics and Systems Biology for Health, CNRS Institute of Biological Sciences, 7 rue Guy Moquet-BP8, 94801 Villejuif cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1378/chest.09-1850DOI Listing
June 2010

Bridging the gap between systems biology and medicine.

Genome Med 2009 Sep 29;1(9):88. Epub 2009 Sep 29.

Department of Critical Care Medicine and CRISMA laboratory, University of Pittsburgh School of Medicine, Scaife 602, 3550 Terrace, Pittsburgh, PA 15261, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gm88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768995PMC
September 2009

A functional and regulatory network associated with PIP expression in human breast cancer.

PLoS One 2009 5;4(3):e4696. Epub 2009 Mar 5.

Array s/IMAGE, Genexpress, Functional Genomics and Systems Biology for Health, LGN-UMR 7091-CNRS and Pierre & Marie Curie University, Paris VI, Villejuif, France.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004696PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650800PMC
June 2009

Computational disease modeling - fact or fiction?

BMC Syst Biol 2009 Jun 4;3:56. Epub 2009 Jun 4.

Computational Medicine group, Department of Medicine, Center for Molecular Medicine, Karolinska University Hospital, Solna, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-3-56DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697138PMC
June 2009

Fem1a is a mitochondrial protein up-regulated upon ischemia-reperfusion injury.

FEBS Lett 2009 May 4;583(10):1625-30. Epub 2009 May 4.

CNRS UMR5237, Centre de Recherche en Biochimie Macromoléculaire, Montpellier, France.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1016/j.febslet.2009.04.035
Publisher Site
http://dx.doi.org/10.1016/j.febslet.2009.04.035DOI Listing
May 2009

Origins of systems biology in William Harvey's masterpiece on the movement of the heart and the blood in animals.

Int J Mol Sci 2009 Apr 17;10(4):1658-69. Epub 2009 Apr 17.

Functional Genomics and Systems Biology for Health, CNRS Institute of Biological Sciences, 7 rue Guy Moquet, BP8, 94801 Villejuif, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/ijms10041658DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680639PMC
April 2009

Sharing knowledge: a new frontier for public-private partnerships in medicine.

Authors:
Charles Auffray

Genome Med 2009 Mar 4;1(3):29. Epub 2009 Mar 4.

Functional Genomics and Systems Biology for Health, CNRS Institute of Biological Sciences, 7 rue Guy Moquet BP8, 94801 Villejuif, France.

View Article

Download full-text PDF

Source
http://genomemedicine.biomedcentral.com/articles/10.1186/gm2
Publisher Site
http://dx.doi.org/10.1186/gm29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664940PMC
March 2009

Systems medicine: the future of medical genomics and healthcare.

Genome Med 2009 Jan 20;1(1). Epub 2009 Jan 20.

Functional Genomics and Systems Biology for Health, LGN-UMR 7091, CNRS and Pierre & Marie Curie University of Paris VI, 7 rue Guy Moquet, 94801 Villejuif, France.

View Article

Download full-text PDF

Source
http://genomemedicine.biomedcentral.com/articles/10.1186/gm2
Publisher Site
http://dx.doi.org/10.1186/gm2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2651587PMC
January 2009

The beta-catenin pathway is activated in focal nodular hyperplasia but not in cirrhotic FNH-like nodules.

J Hepatol 2008 Jul 18;49(1):61-71. Epub 2008 Apr 18.

Inserm, U674, Génomique fonctionnelle des tumeurs solides, 27 rue Juliette Dodu, Paris F-75010, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jhep.2008.03.013DOI Listing
July 2008

Scale relativity theory and integrative systems biology: 1. Founding principles and scale laws.

Prog Biophys Mol Biol 2008 May 2;97(1):79-114. Epub 2007 Oct 2.

Functional Genomics and Systems Biology for Health, UMR 7091-LGN, CNRS/Pierre & Marie Curie University-Paris VI, 7 rue Guy Moquet-BP 8, 94801 Villejuif Cedex, France.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S007961070700087
Publisher Site
http://dx.doi.org/10.1016/j.pbiomolbio.2007.09.002DOI Listing
May 2008

Scale relativity theory and integrative systems biology: 2. Macroscopic quantum-type mechanics.

Prog Biophys Mol Biol 2008 May 2;97(1):115-57. Epub 2007 Oct 2.

LUTH, CNRS, Observatoire de Paris and Paris Diderot University-Paris VII, 5 Place Jules Janssen, 92190 Meudon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pbiomolbio.2007.09.001DOI Listing
May 2008

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Authors:
Chisato Yamasaki Katsuhiko Murakami Yasuyuki Fujii Yoshiharu Sato Erimi Harada Jun-ichi Takeda Takayuki Taniya Ryuichi Sakate Shingo Kikugawa Makoto Shimada Motohiko Tanino Kanako O Koyanagi Roberto A Barrero Craig Gough Hong-Woo Chun Takuya Habara Hideki Hanaoka Yosuke Hayakawa Phillip B Hilton Yayoi Kaneko Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Akihiro Matsuya Naoki Nagata Kensaku Nishikata Akiko Ogura Noda Shin Nurimoto Naomi Saichi Hiroaki Sakai Ryoko Sanbonmatsu Rie Shiba Mami Suzuki Kazuhiko Takabayashi Aiko Takahashi Takuro Tamura Masayuki Tanaka Susumu Tanaka Fusano Todokoro Kaori Yamaguchi Naoyuki Yamamoto Toshihisa Okido Jun Mashima Aki Hashizume Lihua Jin Kyung-Bum Lee Yi-Chueh Lin Asami Nozaki Katsunaga Sakai Masahito Tada Satoru Miyazaki Takashi Makino Hajime Ohyanagi Naoki Osato Nobuhiko Tanaka Yoshiyuki Suzuki Kazuho Ikeo Naruya Saitou Hideaki Sugawara Claire O'Donovan Tamara Kulikova Eleanor Whitfield Brian Halligan Mary Shimoyama Simon Twigger Kei Yura Kouichi Kimura Tomohiro Yasuda Tetsuo Nishikawa Yutaka Akiyama Chie Motono Yuri Mukai Hideki Nagasaki Makiko Suwa Paul Horton Reiko Kikuno Osamu Ohara Doron Lancet Eric Eveno Esther Graudens Sandrine Imbeaud Marie Anne Debily Yoshihide Hayashizaki Clara Amid Michael Han Andreas Osanger Toshinori Endo Michael A Thomas Mika Hirakawa Wojciech Makalowski Mitsuteru Nakao Nam-Soon Kim Hyang-Sook Yoo Sandro J De Souza Maria de Fatima Bonaldo Yoshihito Niimura Vladimir Kuryshev Ingo Schupp Stefan Wiemann Matthew Bellgard Masafumi Shionyu Libin Jia Danielle Thierry-Mieg Jean Thierry-Mieg Lukas Wagner Qinghua Zhang Mitiko Go Shinsei Minoshima Masafumi Ohtsubo Kousuke Hanada Peter Tonellato Takao Isogai Ji Zhang Boris Lenhard Sangsoo Kim Zhu Chen Ursula Hinz Anne Estreicher Kenta Nakai Izabela Makalowska Winston Hide Nicola Tiffin Laurens Wilming Ranajit Chakraborty Marcelo Bento Soares Maria Luisa Chiusano Yutaka Suzuki Charles Auffray Yumi Yamaguchi-Kabata Takeshi Itoh Teruyoshi Hishiki Satoshi Fukuchi Ken Nishikawa Sumio Sugano Nobuo Nomura Yoshio Tateno Tadashi Imanishi Takashi Gojobori

Nucleic Acids Res 2008 Jan 18;36(Database issue):D793-9. Epub 2007 Dec 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238988PMC
January 2008

The cytoskeleton-associated PDZ-LIM protein, ALP, acts on serum response factor activity to regulate muscle differentiation.

Mol Biol Cell 2007 May 1;18(5):1723-33. Epub 2007 Mar 1.

Centre National de la Recherche Scientifique Unité Mixte de Recherche 5237, Centre de Recherches de Biochimie Macromoléculaire, 34293 Montpellier, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1091/mbc.e06-09-0815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855033PMC
May 2007

A transgenic mouse model engineered to investigate human brain-derived neurotrophic factor in vivo.

Transgenic Res 2007 Apr 16;16(2):223-37. Epub 2007 Jan 16.

Genexpress, Génomique Fonctionnelle et Biologie Systémique pour la Santé, CNRS et Université Pierre et Marie Curie Paris VI, LGN, UMR 7091, 7 rue Guy Moquet, BP8, 94801 Villejuif, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s11248-006-9060-0DOI Listing
April 2007

Deciphering cellular states of innate tumor drug responses.

Genome Biol 2006 15;7(3):R19. Epub 2006 Mar 15.

Array s/IMAGE, Genexpress, Functional Genomics and Systems Biology for Health, LGN-UMR 7091-CNRS and Pierre and Marie Curie University, Paris VI, Villejuif, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2006-7-3-r19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557757PMC
July 2006

Coordination of intrinsic, extrinsic, and endoplasmic reticulum-mediated apoptosis by imatinib mesylate combined with arsenic trioxide in chronic myeloid leukemia.

Blood 2006 Feb 25;107(4):1582-90. Epub 2005 Oct 25.

State Key Laboratory of Medical Genomics and Shanghai Institute of Ruijin Hospital, School of Medicine of Shanghai Jiao Tong University, Shanghai 200025, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1182/blood-2005-06-2318DOI Listing
February 2006

Integration of Myeloblastosis Associated Virus proviral sequences occurs in the vicinity of genes encoding signaling proteins and regulators of cell proliferation.

Cell Commun Signal 2006 Jan 10;4. Epub 2006 Jan 10.

Laboratoire d'Oncologie Virale et Moléculaire, Case 7048, UFR de Biochimie, 2 place Jussieu, Université Paris 7 D, Diderot, 75005 Paris, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1478-811X-4-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1368981PMC
January 2006

'The 39 steps' in gene expression profiling: critical issues and proposed best practices for microarray experiments.

Drug Discov Today 2005 Sep;10(17):1175-82

Array s/IMAGE, Genexpress, Functional Genomics and Systems Biology for Health, LGN UMR 7091, CNRS and Pierre and Marie Curie University, Paris VI, Villejuif, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S1359-6446(05)03565-8DOI Listing
September 2005

Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces.

Nucleic Acids Res 2005 Mar 30;33(6):e56. Epub 2005 Mar 30.

Array s/IMAGE, Genexpress, Functional Genomics and Systems Biology for Health LGN-UMR 7091, CNRS and Pierre and Marie Curie University of Paris 6, 7, rue Guy Môquet, 94801 Villejuif, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gni054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1072807PMC
March 2005

Sex-linked recombination variation and distribution of disease-related genes.

Gene 2005 Feb;346:29-39

Genexpress, Functional Genomics and Systems Biology for Health, CNRS UMR 7091-7, rue Guy Moquet, BP8, 94801 Villejuif Cedex, France.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S037811190400640
Publisher Site
http://dx.doi.org/10.1016/j.gene.2004.10.019DOI Listing
February 2005

Characterization of a new human isoform of the enigma homolog family specifically expressed in skeletal muscle.

Biochem Biophys Res Commun 2004 Dec;325(4):1304-11

CNRS FRE2593, Centre de Recherche de Biochimie Macromoléculaire, Montpellier, France.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S0006291X0402509
Publisher Site
http://dx.doi.org/10.1016/j.bbrc.2004.10.178DOI Listing
December 2004