Charles A Ettensohn

Charles A Ettensohn

UNVERIFIED PROFILE

Are you Charles A Ettensohn?   Register this Author

Register author
Charles A Ettensohn

Charles A Ettensohn

Publications by authors named "Charles A Ettensohn"

Are you Charles A Ettensohn?   Register this Author

36Publications

311Reads

45Profile Views

The evolution of a new cell type was associated with competition for a signaling ligand.

PLoS Biol 2019 Sep 18;17(9):e3000460. Epub 2019 Sep 18.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.3000460DOI Listing
September 2019

Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis.

Development 2019 Aug 19;146(16). Epub 2019 Aug 19.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.180653DOI Listing
August 2019

Techniques for analyzing gene expression using BAC-based reporter constructs.

Methods Cell Biol 2019 23;151:197-218. Epub 2019 Feb 23.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/bs.mcb.2019.01.004DOI Listing
July 2019

Genome-wide analysis of chromatin accessibility using ATAC-seq.

Methods Cell Biol 2019 21;151:219-235. Epub 2018 Dec 21.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/bs.mcb.2018.11.002DOI Listing
July 2019

From genome to anatomy: The architecture and evolution of the skeletogenic gene regulatory network of sea urchins and other echinoderms.

Genesis 2018 10;56(10):e23253

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/dvg.23253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6294693PMC
October 2018

Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling.

BMC Genomics 2018 03 20;19(1):206. Epub 2018 Mar 20.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-018-4542-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5859501PMC
March 2018

Functional divergence of paralogous transcription factors supported the evolution of biomineralization in echinoderms.

Elife 2017 11 20;6. Epub 2017 Nov 20.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7554/eLife.32728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5758115PMC
November 2017

KirrelL, a member of the Ig-domain superfamily of adhesion proteins, is essential for fusion of primary mesenchyme cells in the sea urchin embryo.

Dev Biol 2017 Jan 17;421(2):258-270. Epub 2016 Nov 17.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ydbio.2016.11.006DOI Listing
January 2017

TGF-β sensu stricto signaling regulates skeletal morphogenesis in the sea urchin embryo.

Dev Biol 2017 Jan 10;421(2):149-160. Epub 2016 Dec 10.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, United States. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ydbio.2016.12.007DOI Listing
January 2017

Signal-dependent regulation of the sea urchin skeletogenic gene regulatory network.

Gene Expr Patterns 2014 Nov 16;16(2):93-103. Epub 2014 Oct 16.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gep.2014.10.002DOI Listing
November 2014

Horizontal transfer of the msp130 gene supported the evolution of metazoan biomineralization.

Evol Dev 2014 May 15;16(3):139-48. Epub 2014 Apr 15.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/ede.12074DOI Listing
May 2014

Growth factors and early mesoderm morphogenesis: insights from the sea urchin embryo.

Genesis 2014 Mar 5;52(3):158-72. Epub 2014 Mar 5.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/dvg.22746DOI Listing
March 2014

Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins.

Development 2014 Feb;141(4):950-61

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.105585DOI Listing
February 2014

Growth factor-mediated mesodermal cell guidance and skeletogenesis during sea urchin gastrulation.

Development 2013 Oct 11;140(20):4214-25. Epub 2013 Sep 11.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
https://www.bio.cmu.edu/labs/ettensohn/pdfs/Development-2013
Web Search
http://dev.biologists.org/cgi/doi/10.1242/dev.100479
Publisher Site
http://dx.doi.org/10.1242/dev.100479DOI Listing
October 2013

Encoding anatomy: developmental gene regulatory networks and morphogenesis.

Genesis 2013 Jun 28;51(6):383-409. Epub 2013 Mar 28.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/dvg.22380DOI Listing
June 2013

The genomic regulatory control of skeletal morphogenesis in the sea urchin.

Development 2012 Feb 21;139(3):579-90. Epub 2011 Dec 21.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.073049DOI Listing
February 2012

Regulative deployment of the skeletogenic gene regulatory network during sea urchin development.

Development 2011 Jun;138(12):2581-90

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.065193DOI Listing
June 2011

P58-A and P58-B: novel proteins that mediate skeletogenesis in the sea urchin embryo.

Dev Biol 2011 May 26;353(1):81-93. Epub 2011 Feb 26.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ydbio.2011.02.021DOI Listing
May 2011

Activation of the skeletogenic gene regulatory network in the early sea urchin embryo.

Development 2010 Apr 24;137(7):1149-57. Epub 2010 Feb 24.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.048652DOI Listing
April 2010

The expression and distribution of Wnt and Wnt receptor mRNAs during early sea urchin development.

Gene Expr Patterns 2010 Jan 22;10(1):60-4. Epub 2009 Oct 22.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gep.2009.10.004DOI Listing
January 2010

Lessons from a gene regulatory network: echinoderm skeletogenesis provides insights into evolution, plasticity and morphogenesis.

Development 2009 Jan;136(1):11-21

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.023564DOI Listing
January 2009

Mesenchymal cell fusion in the sea urchin embryo.

Methods Mol Biol 2008 ;475:315-34

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-59745-250-2_18DOI Listing
November 2008

Gene regulatory networks and developmental plasticity in the early sea urchin embryo: alternative deployment of the skeletogenic gene regulatory network.

Development 2007 Sep 1;134(17):3077-87. Epub 2007 Aug 1.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dev.biologists.org/cgi/doi/10.1242/dev.009092
Publisher Site
http://dx.doi.org/10.1242/dev.009092DOI Listing
September 2007

Analysis of dishevelled localization and function in the early sea urchin embryo.

Dev Biol 2007 Jun 6;306(1):50-65. Epub 2007 Mar 6.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ydbio.2007.02.041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697034PMC
June 2007

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

The emergence of pattern in embryogenesis: regulation of beta-catenin localization during early sea urchin development.

Sci STKE 2006 Nov 14;2006(361):pe48. Epub 2006 Nov 14.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/stke.3612006pe48DOI Listing
November 2006

P16 is an essential regulator of skeletogenesis in the sea urchin embryo.

Dev Biol 2005 Jul;283(2):384-96

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ydbio.2005.02.037DOI Listing
July 2005

The invertebrate deuterostomes: an introduction to their phylogeny, reproduction, development, and genomics.

Methods Cell Biol 2004 ;74:1-13

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0091-679x(04)74001-7DOI Listing
February 2005

Rapid microinjection of fertilized eggs.

Methods Cell Biol 2004 ;74:287-310

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0091-679x(04)74013-3DOI Listing
February 2005

Differential stability of beta-catenin along the animal-vegetal axis of the sea urchin embryo mediated by dishevelled.

Development 2004 Jun 19;131(12):2947-56. Epub 2004 May 19.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.01152DOI Listing
June 2004

Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo.

Development 2003 Jul;130(13):2917-28

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.00511DOI Listing
July 2003

Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus.

Dev Genes Evol 2002 Oct 7;212(9):419-31. Epub 2002 Sep 7.

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00427-002-0261-0DOI Listing
October 2002

Cloning and developmental expression of a novel, secreted frizzled-related protein from the sea urchin, Strongylocentrotus purpuratus.

Mech Dev 2002 Apr;113(1):61-4

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0925-4773(01)00657-8DOI Listing
April 2002

LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties.

Development 2002 Apr;129(8):1945-55

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

View Article

Download full-text PDF

Source
April 2002