Publications by authors named "Chad L Myers"

100Publications

Identification of nodulation-related genes in using genome-wide association studies and co-expression networks.

Plant Direct 2020 May 16;4(5):e00220. Epub 2020 May 16.

Bioinformatics and Computational Biology University of Minnesota St. Paul Minnesota.

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http://dx.doi.org/10.1002/pld3.220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229696PMC
May 2020

EXO1 resection at G-quadruplex structures facilitates resolution and replication.

Nucleic Acids Res 2020 05;48(9):4960-4975

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1093/nar/gkaa199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229832PMC
May 2020

Publisher Correction: Integrating yeast chemical genomics and mammalian cell pathway analysis.

Acta Pharmacol Sin 2020 05;41(5):729

The National Center for Drug Screening and the CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai, 201203, China.

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http://dx.doi.org/10.1038/s41401-019-0355-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7471429PMC
May 2020

Revealing Functional Crosstalk between Distinct Bioprocesses through Reciprocal Functional Tests of Genetically Interacting Genes.

Cell Rep 2019 11;29(9):2646-2658.e5

Department of Informatics Engineering, School of Electronic Information and Communications, Huazhong University of Science and Technology, Wuhan 430074, China. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.10.076DOI Listing
November 2019

Integrating yeast chemical genomics and mammalian cell pathway analysis.

Acta Pharmacol Sin 2019 Sep 28;40(9):1245-1255. Epub 2019 May 28.

The National Center for Drug Screening and the CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai, 201203, China.

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http://www.nature.com/articles/s41401-019-0231-y
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http://dx.doi.org/10.1038/s41401-019-0231-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6786357PMC
September 2019

Domain insertion permissibility-guided engineering of allostery in ion channels.

Nat Commun 2019 01 17;10(1):290. Epub 2019 Jan 17.

Department of Genetics, Cell Biology & Development, University of Minnesota, Minneapolis, 55455, MN, USA.

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http://www.nature.com/articles/s41467-018-08171-0
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http://dx.doi.org/10.1038/s41467-018-08171-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336875PMC
January 2019

Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize.

Plant Cell 2018 12 9;30(12):2922-2942. Epub 2018 Nov 9.

Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455

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http://www.plantcell.org/lookup/doi/10.1105/tpc.18.00299
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http://dx.doi.org/10.1105/tpc.18.00299DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354270PMC
December 2018

Integrating genetic and protein-protein interaction networks maps a functional wiring diagram of a cell.

Curr Opin Microbiol 2018 10 28;45:170-179. Epub 2018 Jul 28.

The Donnelly Centre, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada; Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada; RIKEN Center for Sustainable Resource Science, Wako, Saitama, Japan.

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http://dx.doi.org/10.1016/j.mib.2018.06.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6295359PMC
October 2018

In Vitro Pluripotent Stem Cell Differentiation to Hepatocyte Ceases Further Maturation at an Equivalent Stage of E15 in Mouse Embryonic Liver Development.

Stem Cells Dev 2018 07 31;27(13):910-921. Epub 2018 May 31.

1 Department of Chemical Engineering and Materials Science, University of Minnesota , Minneapolis, Minnesota.

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http://dx.doi.org/10.1089/scd.2017.0270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6916117PMC
July 2018

Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity.

Cell 2018 03 8;173(1):62-73.e9. Epub 2018 Mar 8.

Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Cambridge, MA 02139, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183017
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http://dx.doi.org/10.1016/j.cell.2018.02.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5945206PMC
March 2018

Different Modes of Negative Regulation of Plant Immunity by Calmodulin-Related Genes.

Plant Physiol 2018 04 15;176(4):3046-3061. Epub 2018 Feb 15.

Department of Plant and Microbial Biology and Microbial and Plant Genomics Institute, University of Minnesota, Twin Cities, Saint Paul, Minnesota 55108

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http://dx.doi.org/10.1104/pp.17.01209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884591PMC
April 2018

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast.

Microb Cell Fact 2018 Jan 12;17(1). Epub 2018 Jan 12.

Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, 1552 University Ave, Madison, WI, USA.

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http://dx.doi.org/10.1186/s12934-017-0848-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5767017PMC
January 2018

Development of expression-based biomarkers of Dasatinib response in hematologic malignancies.

Blood Cancer J 2017 12 15;7(12):652. Epub 2017 Dec 15.

Department of Molecular, Cellular, Developmental Biology, and Genetics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN, 55455, USA.

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http://dx.doi.org/10.1038/s41408-017-0013-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802564PMC
December 2017

Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology.

PLoS Genet 2017 09 28;13(9):e1006945. Epub 2017 Sep 28.

Epidemiology and Genomics Research Program, Division of Cancer Control and Population Sciences, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619686PMC
September 2017

Pathway-based discovery of genetic interactions in breast cancer.

PLoS Genet 2017 Sep 28;13(9):e1006973. Epub 2017 Sep 28.

Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619706PMC
September 2017

Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping.

Cell Rep 2017 Sep;20(11):2735-2748

Department of Biochemistry, University of Toronto, Toronto, ON M5G 1M1, Canada; Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.08.074DOI Listing
September 2017

The highly buffered Arabidopsis immune signaling network conceals the functions of its components.

PLoS Genet 2017 May 4;13(5):e1006639. Epub 2017 May 4.

Department of Plant and Microbial Biology, Microbial and Plant Genomics Institute, University of Minnesota, Twin-Cities, Saint Paul, Minnesota, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006639DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5417422PMC
May 2017

A New Natural Product Analog of Blasticidin S Reveals Cellular Uptake Facilitated by the NorA Multidrug Transporter.

Antimicrob Agents Chemother 2017 06 24;61(6). Epub 2017 May 24.

Laboratory of Bioorganic Chemistry, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA

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http://dx.doi.org/10.1128/AAC.02635-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444127PMC
June 2017

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.

BMC Genomics 2016 11 4;17(1):875. Epub 2016 Nov 4.

Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN, 55108, USA.

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http://dx.doi.org/10.1186/s12864-016-3194-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5097351PMC
November 2016

A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions.

Mol Syst Biol 2016 Oct 24;12(10):884. Epub 2016 Oct 24.

Program in Systems Biology and Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5081483PMC
http://dx.doi.org/10.15252/msb.20167131DOI Listing
October 2016

Unraveling gene function in agricultural species using gene co-expression networks.

Biochim Biophys Acta Gene Regul Mech 2017 Jan 30;1860(1):53-63. Epub 2016 Jul 30.

Biomedical Informatics and Computational Biology Graduate Program, University of Minnesota, Minneapolis, MN 55455, United States; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN 55455, United States. Electronic address:

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http://dx.doi.org/10.1016/j.bbagrm.2016.07.016DOI Listing
January 2017

Fine-Mapping of 18q21.1 Locus Identifies Single Nucleotide Polymorphisms Associated with Nonsyndromic Cleft Lip with or without Cleft Palate.

Front Genet 2016 23;7:88. Epub 2016 May 23.

Division of Pediatric Dentistry, Department of Developmental and Surgical Science, University of Minnesota Minneapolis, MN, USA.

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http://dx.doi.org/10.3389/fgene.2016.00088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876112PMC
May 2016

Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing.

PLoS Genet 2015 Nov 6;11(11):e1005659. Epub 2015 Nov 6.

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, Minnesota, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636136PMC
November 2015

Transcription Factor Activity Mapping of a Tissue-Specific Gene Regulatory Network.

Cell Syst 2015 Aug;1(2):152-162

Program in Systems Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA ; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://www.cell.com/cell-systems/pdf/S2405-4712(15)00056-3.p
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http://www.cell.com/cms/attachment/2035533708/2051122925/mmc
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http://linkinghub.elsevier.com/retrieve/pii/S240547121500056
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http://dx.doi.org/10.1016/j.cels.2015.08.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4584425PMC
August 2015

Plant-derived antifungal agent poacic acid targets β-1,3-glucan.

Proc Natl Acad Sci U S A 2015 Mar 9;112(12):E1490-7. Epub 2015 Mar 9.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, Japan 277-8561;

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http://dx.doi.org/10.1073/pnas.1410400112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378397PMC
March 2015

Chemical genomic profiling via barcode sequencing to predict compound mode of action.

Methods Mol Biol 2015 ;1263:299-318

Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, WEI4152, 1552 University Ave., Madison, WI, 53726, USA,

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http://dx.doi.org/10.1007/978-1-4939-2269-7_23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497522PMC
September 2015

YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens.

Genome Med 2014 20;6(11):100. Epub 2014 Nov 20.

Department of Genetics, Cell Biology and Development, University of Minnesota, 6-160 Jackson Hall, Minneapolis, MN 55415 USA ; Department of Molecular Microbiology and Biotechnology, Tel Aviv University, 418 Britannia Building, Ramat Aviv, 69978 Israel.

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http://dx.doi.org/10.1186/s13073-014-0100-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263066PMC
December 2014

Unraveling the biology of a fungal meningitis pathogen using chemical genetics.

Cell 2014 Nov;159(5):1168-1187

Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.10.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243055PMC
November 2014

Synthetic genetic array analysis for global mapping of genetic networks in yeast.

Methods Mol Biol 2014 ;1205:143-68

The Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada.

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http://dx.doi.org/10.1007/978-1-4939-1363-3_10DOI Listing
May 2015

Forazoline A: marine-derived polyketide with antifungal in vivo efficacy.

Angew Chem Int Ed Engl 2014 Oct 4;53(43):11583-6. Epub 2014 Sep 4.

Pharmaceutical Sciences Division, University of Wisconsin-Madison, Madison, WI 53705 (USA).

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http://dx.doi.org/10.1002/anie.201405990DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4215405PMC
October 2014

Linking genetics to structural biology: complex heterozygosity screening with actin alanine scan alleles identifies functionally related surfaces on yeast actin.

G3 (Bethesda) 2014 Jun 17;4(8):1491-501. Epub 2014 Jun 17.

Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210

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http://dx.doi.org/10.1534/g3.114.012054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132179PMC
June 2014

Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser.

PLoS One 2014 12;9(6):e99193. Epub 2014 Jun 12.

Biomedical Informatics and Computational Biology Graduate Program, University of Minnesota Rochester, Rochester, Minnesota, United States of America; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0099193PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4055606PMC
January 2015

Mechanisms underlying robustness and tunability in a plant immune signaling network.

Cell Host Microbe 2014 Jan;15(1):84-94

Department of Plant Biology, Microbial and Plant Genomics Institute, University of Minnesota, St. Paul, MN 55108, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19313128130043
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http://dx.doi.org/10.1016/j.chom.2013.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4075322PMC
January 2014

Using networks to measure similarity between genes: association index selection.

Nat Methods 2013 Dec;10(12):1169-76

1] Program in Systems Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA. [2] Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.2728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3959882PMC
December 2013

Unbiased screening of marine sponge extracts for anti-inflammatory agents combined with chemical genomics identifies girolline as an inhibitor of protein synthesis.

ACS Chem Biol 2014 Jan 29;9(1):247-57. Epub 2013 Oct 29.

Department of Pediatrics, British Columbia Children's Hospital and Child & Family Research Institute, University of British Columbia , Vancouver, British Columbia V5Z 4H4, Canada.

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http://dx.doi.org/10.1021/cb400740cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371607PMC
January 2014

A comparative genomic approach for identifying synthetic lethal interactions in human cancer.

Cancer Res 2013 Oct 26;73(20):6128-36. Epub 2013 Aug 26.

Authors' Affiliations: Department of Computer Science and Engineering; Program in Biomedical Informatics and Computational Biology, University of Minnesota, Minneapolis; Department of Surgery, Mayo Clinic, Rochester, Minnesota; Department of Laboratory Medicine & Pathology, Molecular Genetics Lab, Mayo Clinic, Rochester, Minnesota; Department of Molecular Genetics, Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Ontario, Canada; Chemical Genomics Research Group, RIKEN Advance Science Institute, Saitama, Japan; and Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin.

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http://dx.doi.org/10.1158/0008-5472.CAN-12-3956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3809957PMC
October 2013

Global linkage map connects meiotic centromere function to chromosome size in budding yeast.

G3 (Bethesda) 2013 Oct 3;3(10):1741-51. Epub 2013 Oct 3.

Banting and Best Department of Medical Research, The Donnelly Center for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.

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http://dx.doi.org/10.1534/g3.113.007377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3789798PMC
October 2013

Epigenetic and genetic influences on DNA methylation variation in maize populations.

Plant Cell 2013 Aug 6;25(8):2783-97. Epub 2013 Aug 6.

Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minesota, Saint Paul, Minesota 55108.

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http://dx.doi.org/10.1105/tpc.113.114793DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784580PMC
August 2013

Comparison of profile similarity measures for genetic interaction networks.

PLoS One 2013 10;8(7):e68664. Epub 2013 Jul 10.

Department of Computer Science and Engineering, University of Minnesota - Twin Cities, Minneapolis, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0068664PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707826PMC
March 2014

Genetic interaction networks: toward an understanding of heritability.

Annu Rev Genomics Hum Genet 2013 26;14:111-33. Epub 2013 Jun 26.

Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544.

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http://dx.doi.org/10.1146/annurev-genom-082509-141730DOI Listing
December 2013

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens.

Nucleic Acids Res 2013 Jul 15;41(Web Server issue):W591-6. Epub 2013 May 15.

Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, M5S 3E1, Canada.

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http://dx.doi.org/10.1093/nar/gkt400DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692131PMC
July 2013

A Whole Genome Screen for Minisatellite Stability Genes in Stationary-Phase Yeast Cells.

G3 (Bethesda) 2013 04 9;3(4):741-756. Epub 2013 Apr 9.

Department of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, Minnesota 55455

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http://dx.doi.org/10.1534/g3.112.005397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618361PMC
April 2013

Reshaping of the maize transcriptome by domestication.

Proc Natl Acad Sci U S A 2012 Jul 2;109(29):11878-83. Epub 2012 Jul 2.

Microbial and Plant Genomics Institute, Department of Plant Biology, University of Minnesota, Saint Paul, MN 55108, USA.

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http://dx.doi.org/10.1073/pnas.1201961109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406829PMC
July 2012

An omics perspective of protein disorder.

Mol Biosyst 2012 Jan 18;8(1):185-93. Epub 2011 Nov 18.

Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1039/c1mb05235gDOI Listing
January 2012

Systematic exploration of synergistic drug pairs.

Mol Syst Biol 2011 Nov 8;7:544. Epub 2011 Nov 8.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1038/msb.2011.71DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261710PMC
November 2011

Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping.

Nat Methods 2011 Oct 30;8(12):1059-64. Epub 2011 Oct 30.

Program in Systems Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.1748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3235803PMC
October 2011

Protein complexes are central in the yeast genetic landscape.

PLoS Comput Biol 2011 Feb 24;7(2):e1001092. Epub 2011 Feb 24.

The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.

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http://dx.plos.org/10.1371/journal.pcbi.1001092
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http://dx.doi.org/10.1371/journal.pcbi.1001092DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044758PMC
February 2011

Bringing order to protein disorder through comparative genomics and genetic interactions.

Genome Biol 2011 16;12(2):R14. Epub 2011 Feb 16.

Department of Computer Science and Engineering, University of Minnesota, 200 Union Street SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1186/gb-2011-12-2-r14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188796PMC
February 2012

A scalable approach for discovering conserved active subnetworks across species.

PLoS Comput Biol 2010 Dec 9;6(12):e1001028. Epub 2010 Dec 9.

Department of Computer Science and Engineering, University of Minnesota-Twin Cities, Minneapolis, Minnesota, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1001028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3000367PMC
December 2010

Charting the genetic interaction map of a cell.

Curr Opin Biotechnol 2011 Feb 24;22(1):66-74. Epub 2010 Nov 24.

Banting and Best Department of Medical Research and Department of Molecular Genetics, Terrence Donnelly Center for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1016/j.copbio.2010.11.001DOI Listing
February 2011

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Methods Enzymol 2010 1;470:145-79. Epub 2010 Mar 1.

Banting and Best Department of Medical Research, Terrence Donnelly Center for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1016/S0076-6879(10)70007-0DOI Listing
January 2011

An integrative multi-network and multi-classifier approach to predict genetic interactions.

PLoS Comput Biol 2010 Sep 9;6(9). Epub 2010 Sep 9.

Department of Computer Science and Engineering, University of Minnesota, Twin Cities, Minneapolis, Minnesota, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1000928DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2936518PMC
September 2010

Subspace differential coexpression analysis: problem definition and a general approach.

Pac Symp Biocomput 2010 :145-56

Department of Computer Science, University of Minnesota, Twin Cities, 200 Union Street SE, Minneapolis, MN 55455, USA.

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http://psb.stanford.edu/psb-online/proceedings/psb10/fang.pd
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November 2013

DRYGIN: a database of quantitative genetic interaction networks in yeast.

Nucleic Acids Res 2010 Jan 30;38(Database issue):D502-7. Epub 2009 Oct 30.

Banting and Best Department of Medical Research, The Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, ON, Canada.

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http://dx.doi.org/10.1093/nar/gkp820DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808960PMC
January 2010

Discovering biological networks from diverse functional genomic data.

Methods Mol Biol 2009 ;563:157-75

Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1007/978-1-60761-175-2_9DOI Listing
October 2009

Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data.

Methods Mol Biol 2009 ;548:273-93

Department of Computer Science, Princeton University, Princeton, NJ 08544, USA.

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http://dx.doi.org/10.1007/978-1-59745-540-4_15DOI Listing
July 2009