Chad Huff

Chad Huff

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Chad Huff

Chad Huff

Publications by authors named "Chad Huff"

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A genome-wide association study of prostate cancer in Latinos.

Int J Cancer 2020 04 3;146(7):1819-1826. Epub 2019 Jul 3.

Department of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.

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http://dx.doi.org/10.1002/ijc.32525DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028127PMC
April 2020

Tbx3-Mediated Regulation of Cardiac Conduction System Development and Function: Potential Contributions of Alternative RNA Processing.

Pediatr Cardiol 2019 Oct 1;40(7):1388-1400. Epub 2019 Aug 1.

Department of Molecular and Functional Genomics, Weis Center for Research, Geisinger Clinic, 100 North Academy Ave 26-18, Danville, PA, 17822, USA.

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http://dx.doi.org/10.1007/s00246-019-02166-4DOI Listing
October 2019

Integrated case-control and somatic-germline interaction analyses of melanoma susceptibility genes.

Biochim Biophys Acta Mol Basis Dis 2018 Jun 6;1864(6 Pt B):2247-2254. Epub 2018 Jan 6.

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbadis.2018.01.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6501568PMC
June 2018

Reply to Mafessoni and Prüfer: Inferences with and without singleton site patterns.

Proc Natl Acad Sci U S A 2017 11 14;114(48):E10258-E10260. Epub 2017 Nov 14.

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030.

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http://dx.doi.org/10.1073/pnas.1717085114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715792PMC
November 2017

Early history of Neanderthals and Denisovans.

Proc Natl Acad Sci U S A 2017 09 7;114(37):9859-9863. Epub 2017 Aug 7.

Department of Epidemiology, MD Anderson Cancer Center, Houston, TX 77030.

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http://dx.doi.org/10.1073/pnas.1706426114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5604018PMC
September 2017

Two Novel Susceptibility Loci for Prostate Cancer in Men of African Ancestry.

J Natl Cancer Inst 2017 08;109(8)

Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA.

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http://dx.doi.org/10.1093/jnci/djx084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5448553PMC
August 2017

Global methylation of blood leukocyte DNA and risk of melanoma.

Int J Cancer 2017 04 6;140(7):1503-1509. Epub 2017 Jan 6.

Departments of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030.

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http://dx.doi.org/10.1002/ijc.30577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5630148PMC
April 2017

Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.

Authors:
Maggie C Y Ng Mariaelisa Graff Yingchang Lu Anne E Justice Poorva Mudgal Ching-Ti Liu Kristin Young Lisa R Yanek Mary F Feitosa Mary K Wojczynski Kristin Rand Jennifer A Brody Brian E Cade Latchezar Dimitrov Qing Duan Xiuqing Guo Leslie A Lange Michael A Nalls Hayrettin Okut Salman M Tajuddin Bamidele O Tayo Sailaja Vedantam Jonathan P Bradfield Guanjie Chen Wei-Min Chen Alessandra Chesi Marguerite R Irvin Badri Padhukasahasram Jennifer A Smith Wei Zheng Matthew A Allison Christine B Ambrosone Elisa V Bandera Traci M Bartz Sonja I Berndt Leslie Bernstein William J Blot Erwin P Bottinger John Carpten Stephen J Chanock Yii-Der Ida Chen David V Conti Richard S Cooper Myriam Fornage Barry I Freedman Melissa Garcia Phyllis J Goodman Yu-Han H Hsu Jennifer Hu Chad D Huff Sue A Ingles Esther M John Rick Kittles Eric Klein Jin Li Barbara McKnight Uma Nayak Barbara Nemesure Adesola Ogunniyi Andrew Olshan Michael F Press Rebecca Rohde Benjamin A Rybicki Babatunde Salako Maureen Sanderson Yaming Shao David S Siscovick Janet L Stanford Victoria L Stevens Alex Stram Sara S Strom Dhananjay Vaidya John S Witte Jie Yao Xiaofeng Zhu Regina G Ziegler Alan B Zonderman Adebowale Adeyemo Stefan Ambs Mary Cushman Jessica D Faul Hakon Hakonarson Albert M Levin Katherine L Nathanson Erin B Ware David R Weir Wei Zhao Degui Zhi Donna K Arnett Struan F A Grant Sharon L R Kardia Olufunmilayo I Oloapde D C Rao Charles N Rotimi Michele M Sale L Keoki Williams Babette S Zemel Diane M Becker Ingrid B Borecki Michele K Evans Tamara B Harris Joel N Hirschhorn Yun Li Sanjay R Patel Bruce M Psaty Jerome I Rotter James G Wilson Donald W Bowden L Adrienne Cupples Christopher A Haiman Ruth J F Loos Kari E North

PLoS Genet 2017 Apr 21;13(4):e1006719. Epub 2017 Apr 21.

Department of Epidemiology, University of North Carolina, Chapel Hill, NC, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5419579PMC
April 2017

VARPRISM: incorporating variant prioritization in tests of de novo mutation association.

Genome Med 2016 08 25;8(1):91. Epub 2016 Aug 25.

Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1186/s13073-016-0341-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997702PMC
August 2016

PADRE: Pedigree-Aware Distant-Relationship Estimation.

Am J Hum Genet 2016 07 30;99(1):154-62. Epub 2016 Jun 30.

Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.05.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005450PMC
July 2016

The Relationship between Native American Ancestry, Body Mass Index and Diabetes Risk among Mexican-Americans.

PLoS One 2015 26;10(10):e0141260. Epub 2015 Oct 26.

Department of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0141260PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4621045PMC
June 2016

Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.

PLoS One 2015 16;10(11):e0142130. Epub 2015 Nov 16.

Human Genetics Center, Division of Epidemiology, Human Genetics, and Environmental Sciences, University of Texas Health Science Center at Houston, Houston, TX, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142130PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646511PMC
June 2016

Mitochondrial DNA 4977-base pair common deletion in blood leukocytes and melanoma risk.

Pigment Cell Melanoma Res 2016 May;29(3):372-8

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1111/pcmr.12474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5520800PMC
May 2016

Whole-exome sequencing identifies novel homozygous mutation in NPAS2 in family with nonobstructive azoospermia.

Fertil Steril 2015 Aug 5;104(2):286-91. Epub 2015 May 5.

Scott Department of Urology, Baylor College of Medicine, Houston, Texas; Center for Reproductive Medicine, Baylor College of Medicine, Houston, Texas. Electronic address:

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http://dx.doi.org/10.1016/j.fertnstert.2015.04.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4522373PMC
August 2015

Shared and unique signals of high-altitude adaptation in geographically distinct Tibetan populations.

PLoS One 2014 18;9(3):e88252. Epub 2014 Mar 18.

Research Center for High-Altitude Medicine, Qinghai University Medical School, Xining, Qinghai, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088252PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3958363PMC
December 2014

Accurate and robust prediction of genetic relationship from whole-genome sequences.

PLoS One 2014 28;9(2):e85437. Epub 2014 Feb 28.

Institute for Systems Biology, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0085437PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3938395PMC
November 2014

A genetic mechanism for Tibetan high-altitude adaptation.

Nat Genet 2014 Sep 17;46(9):951-6. Epub 2014 Aug 17.

1] Department of Medicine, University of Utah School of Medicine and George E. Wahlin Veterans Administration Medical Center, Salt Lake City, Utah, USA. [2] Eccles Institute of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, USA. [3].

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http://dx.doi.org/10.1038/ng.3067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473257PMC
September 2014

Detecting statistical interaction between somatic mutational events and germline variation from next-generation sequence data.

Authors:
Hao Hu Chad D Huff

Pac Symp Biocomput 2014 :51-62

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, 1155 Pressler Street, Houston, TX, 77030, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926123PMC
August 2014

Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.

Am J Hum Genet 2014 Apr;94(4):599-610

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA; Utah Science, Technology, and Research Center for Genetic Discovery, University of Utah, Salt Lake City, UT 84112, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.03.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3980410PMC
April 2014

Using VAAST to Identify Disease-Associated Variants in Next-Generation Sequencing Data.

Curr Protoc Hum Genet 2014 Apr 24;81:6.14.1-25. Epub 2014 Apr 24.

Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah; These authors collectively are the first authors of the unit.

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http://dx.doi.org/10.1002/0471142905.hg0614s81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137768PMC
April 2014

Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians.

PLoS Genet 2013 18;9(7):e1003634. Epub 2013 Jul 18.

Eccles Institute of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, USA.

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http://dx.doi.org/10.1371/journal.pgen.1003634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715426PMC
January 2014

Relationship estimation from whole-genome sequence data.

PLoS Genet 2014 Jan 30;10(1):e1004144. Epub 2014 Jan 30.

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907355PMC
January 2014

VAAST 2.0: improved variant classification and disease-gene identification using a conservation-controlled amino acid substitution matrix.

Genet Epidemiol 2013 Sep 8;37(6):622-34. Epub 2013 Jul 8.

Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1002/gepi.21743DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791556PMC
September 2013

Metabolic insight into mechanisms of high-altitude adaptation in Tibetans.

Mol Genet Metab 2012 Jun 17;106(2):244-7. Epub 2012 Mar 17.

Research Center for High-Altitude Medicine, Qinghai University Medical School, Xining, Qinghai 810001, People's Republic of China.

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http://dx.doi.org/10.1016/j.ymgme.2012.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3437309PMC
June 2012

Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World.

BMC Genet 2012 May 20;13:39. Epub 2012 May 20.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, 15 N 2030 E Rm 2100, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1186/1471-2156-13-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432609PMC
May 2012

A probabilistic disease-gene finder for personal genomes.

Genome Res 2011 Sep 23;21(9):1529-42. Epub 2011 Jun 23.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah and School of Medicine, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1101/gr.123158.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166837PMC
September 2011

Genetic diversity in India and the inference of Eurasian population expansion.

Genome Biol 2010 24;11(11):R113. Epub 2010 Nov 24.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Salt Lake City, UT 84112, USA.

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http://jorde-lab.genetics.utah.edu/pub/Xing_ENCODE/Supplemen
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http://genomebiology.com/2010/11/11/R113
Publisher Site
http://dx.doi.org/10.1186/gb-2010-11-11-r113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156952PMC
June 2011

Genetic evidence for high-altitude adaptation in Tibet.

Science 2010 Jul 13;329(5987):72-5. Epub 2010 May 13.

Eccles Institute of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.

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http://jorde-lab.genetics.utah.edu/pub/Simonson_HAA/Simonson
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http://www.sciencemag.org/cgi/doi/10.1126/science.1189406
Publisher Site
http://dx.doi.org/10.1126/science.1189406DOI Listing
July 2010

Limited distribution of a cardiomyopathy-associated variant in India.

Ann Hum Genet 2010 Mar 18;74(2):184-8. Epub 2010 Feb 18.

Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1111/j.1469-1809.2010.00561.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901538PMC
March 2010

Mobile elements reveal small population size in the ancient ancestors of Homo sapiens.

Proc Natl Acad Sci U S A 2010 Feb 19;107(5):2147-52. Epub 2010 Jan 19.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1073/pnas.0909000107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836654PMC
February 2010

Detecting positive selection from genome scans of linkage disequilibrium.

BMC Genomics 2010 Jan 5;11. Epub 2010 Jan 5.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA.

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http://dx.doi.org/10.1186/1471-2164-11-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2820459PMC
January 2010

Mobile elements create structural variation: analysis of a complete human genome.

Genome Res 2009 Sep 13;19(9):1516-26. Epub 2009 May 13.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84109, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.091827.109
Publisher Site
http://dx.doi.org/10.1101/gr.091827.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752133PMC
September 2009

Inferring population continuity versus replacement with aDNA: a cautionary tale from the Aleutian Islands.

Hum Biol 2009 Aug;81(4):407-26

Department of Anthropology, University of Utah, 270 S. 1400 E., Rm. 102, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.3378/027.081.0402DOI Listing
August 2009

Linkage disequilibrium between loci with unknown phase.

Genetics 2009 Jul 11;182(3):839-44. Epub 2009 May 11.

Department of Anthropology, University of Utah, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1534/genetics.108.093153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2710162PMC
July 2009