Cesare Furlanello

Cesare Furlanello

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Cesare Furlanello

Publications by authors named "Cesare Furlanello"

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Predictability of drug-induced liver injury by machine learning.

Biol Direct 2020 02 13;15(1). Epub 2020 Feb 13.

Fondazione Bruno Kessler, Via Sommarive 18, Trento, 38123, Italy.

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http://dx.doi.org/10.1186/s13062-020-0259-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7020573PMC
February 2020

A Pan-Cancer Approach to Predict Responsiveness to Immune Checkpoint Inhibitors by Machine Learning.

Cancers (Basel) 2019 Oct 15;11(10). Epub 2019 Oct 15.

Experimental and Clinical Pharmacology Unit, Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, 33081 Aviano, Italy.

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http://dx.doi.org/10.3390/cancers11101562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6827166PMC
October 2019

Stability in GRN Inference.

Methods Mol Biol 2019 ;1883:323-346

Fondazione Bruno Kessler, Trento, Italy.

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http://dx.doi.org/10.1007/978-1-4939-8882-2_14DOI Listing
June 2019

Machine learning models for predicting endocrine disruption potential of environmental chemicals.

J Environ Sci Health C Environ Carcinog Ecotoxicol Rev 2018 10;36(4):237-251. Epub 2019 Jan 10.

a Fondazione Bruno Kessler , Trento , Italy.

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http://dx.doi.org/10.1080/10590501.2018.1537155DOI Listing
April 2019

Novelty Detection using Deep Normative Modeling for IMU-Based Abnormal Movement Monitoring in Parkinson's Disease and Autism Spectrum Disorders.

Sensors (Basel) 2018 Oct 19;18(10). Epub 2018 Oct 19.

Institute for Computing and Information Science, Radboud University, 6525EC Nijmegen, The Netherlands.

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http://dx.doi.org/10.3390/s18103533DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211024PMC
October 2018

Phylogenetic convolutional neural networks in metagenomics.

BMC Bioinformatics 2018 03 8;19(Suppl 2):49. Epub 2018 Mar 8.

Fondazione Bruno Kessler (FBK), Via Sommarive 18 Povo, Trento, I-38123, Italy.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2033-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850953PMC
March 2018

Physiological and self-report responses of parents of children with autism spectrum disorder to children crying.

Res Dev Disabil 2018 Feb 12;73:31-39. Epub 2017 Dec 12.

Observation, Diagnosis and Education, Lab, Department of Psychology and Cognitive Science, University of Trento, Rovereto, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.ridd.2017.12.004DOI Listing
February 2018

The international MAQC Society launches to enhance reproducibility of high-throughput technologies.

Nat Biotechnol 2017 12;35(12):1127-1128

National Center for Toxicological Research, US Food and Drug Administration, Jefferson, Arkansas, USA.

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http://dx.doi.org/10.1038/nbt.4029DOI Listing
December 2017

DTW-MIC Coexpression Networks from Time-Course Data.

PLoS One 2016 31;11(3):e0152648. Epub 2016 Mar 31.

Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152648PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816347PMC
August 2016

Identification of GALNT14 as a novel neuroblastoma predisposition gene.

Oncotarget 2015 Sep;6(28):26335-46

U.O.C. Bioterapie, IRCCS A.O.U. San Martino-IST, Istituto Nazionale per la Ricerca sul Cancro, Genoa, Italy.

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http://dx.doi.org/10.18632/oncotarget.4501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4694905PMC
September 2015

Tumor-infiltrating T lymphocytes improve clinical outcome of therapy-resistant neuroblastoma.

Oncoimmunology 2015 Sep 2;4(9):e1019981. Epub 2015 Apr 2.

Paediatric Haematology/Oncology Department; IRCCS; Ospedale Pediatrico Bambino Gesù , Rome, Italy.

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http://dx.doi.org/10.1080/2162402X.2015.1019981DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570119PMC
September 2015

Stability indicators in network reconstruction.

PLoS One 2014 27;9(2):e89815. Epub 2014 Feb 27.

MPBA/Center for Information and Communication Technology, Fondazione Bruno Kessler, Trento, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0089815PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3937450PMC
October 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Clinical value of prognosis gene expression signatures in colorectal cancer: a systematic review.

PLoS One 2012 7;7(11):e48877. Epub 2012 Nov 7.

Unit of Biomarkers and Susceptibility (UBS), Catalan Institute of Oncology (ICO), Bellvitge Biomedical Research Institute (IDIBELL), and CIBERESP, L'Hospitalet de Llobregat, Barcelona, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048877PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492249PMC
May 2013

Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers.

Bioinformatics 2013 Feb 14;29(3):407-8. Epub 2012 Dec 14.

Fondazione Bruno Kessler, via Sommarive 18, I-38123 Povo (Trento), Italy.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bts707DOI Listing
February 2013

TOFwave: reproducibility in biomarker discovery from time-of-flight mass spectrometry data.

Mol Biosyst 2012 Nov 9;8(11):2845-9. Epub 2012 Aug 9.

Fondazione Bruno Kessler, Trento, Italy.

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http://dx.doi.org/10.1039/c2mb25223fDOI Listing
November 2012

A machine learning pipeline for quantitative phenotype prediction from genotype data.

BMC Bioinformatics 2010 Oct 26;11 Suppl 8:S3. Epub 2010 Oct 26.

Fondazione Bruno Kessler, Trento, Italy.

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http://dx.doi.org/10.1186/1471-2105-11-S8-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966290PMC
October 2010

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Authors:
Leming Shi Gregory Campbell Wendell D Jones Fabien Campagne Zhining Wen Stephen J Walker Zhenqiang Su Tzu-Ming Chu Federico M Goodsaid Lajos Pusztai John D Shaughnessy André Oberthuer Russell S Thomas Richard S Paules Mark Fielden Bart Barlogie Weijie Chen Pan Du Matthias Fischer Cesare Furlanello Brandon D Gallas Xijin Ge Dalila B Megherbi W Fraser Symmans May D Wang John Zhang Hans Bitter Benedikt Brors Pierre R Bushel Max Bylesjo Minjun Chen Jie Cheng Jing Cheng Jeff Chou Timothy S Davison Mauro Delorenzi Youping Deng Viswanath Devanarayan David J Dix Joaquin Dopazo Kevin C Dorff Fathi Elloumi Jianqing Fan Shicai Fan Xiaohui Fan Hong Fang Nina Gonzaludo Kenneth R Hess Huixiao Hong Jun Huan Rafael A Irizarry Richard Judson Dilafruz Juraeva Samir Lababidi Christophe G Lambert Li Li Yanen Li Zhen Li Simon M Lin Guozhen Liu Edward K Lobenhofer Jun Luo Wen Luo Matthew N McCall Yuri Nikolsky Gene A Pennello Roger G Perkins Reena Philip Vlad Popovici Nathan D Price Feng Qian Andreas Scherer Tieliu Shi Weiwei Shi Jaeyun Sung Danielle Thierry-Mieg Jean Thierry-Mieg Venkata Thodima Johan Trygg Lakshmi Vishnuvajjala Sue Jane Wang Jianping Wu Yichao Wu Qian Xie Waleed A Yousef Liang Zhang Xuegong Zhang Sheng Zhong Yiming Zhou Sheng Zhu Dhivya Arasappan Wenjun Bao Anne Bergstrom Lucas Frank Berthold Richard J Brennan Andreas Buness Jennifer G Catalano Chang Chang Rong Chen Yiyu Cheng Jian Cui Wendy Czika Francesca Demichelis Xutao Deng Damir Dosymbekov Roland Eils Yang Feng Jennifer Fostel Stephanie Fulmer-Smentek James C Fuscoe Laurent Gatto Weigong Ge Darlene R Goldstein Li Guo Donald N Halbert Jing Han Stephen C Harris Christos Hatzis Damir Herman Jianping Huang Roderick V Jensen Rui Jiang Charles D Johnson Giuseppe Jurman Yvonne Kahlert Sadik A Khuder Matthias Kohl Jianying Li Li Li Menglong Li Quan-Zhen Li Shao Li Zhiguang Li Jie Liu Ying Liu Zhichao Liu Lu Meng Manuel Madera Francisco Martinez-Murillo Ignacio Medina Joseph Meehan Kelci Miclaus Richard A Moffitt David Montaner Piali Mukherjee George J Mulligan Padraic Neville Tatiana Nikolskaya Baitang Ning Grier P Page Joel Parker R Mitchell Parry Xuejun Peng Ron L Peterson John H Phan Brian Quanz Yi Ren Samantha Riccadonna Alan H Roter Frank W Samuelson Martin M Schumacher Joseph D Shambaugh Qiang Shi Richard Shippy Shengzhu Si Aaron Smalter Christos Sotiriou Mat Soukup Frank Staedtler Guido Steiner Todd H Stokes Qinglan Sun Pei-Yi Tan Rong Tang Zivana Tezak Brett Thorn Marina Tsyganova Yaron Turpaz Silvia C Vega Roberto Visintainer Juergen von Frese Charles Wang Eric Wang Junwei Wang Wei Wang Frank Westermann James C Willey Matthew Woods Shujian Wu Nianqing Xiao Joshua Xu Lei Xu Lun Yang Xiao Zeng Jialu Zhang Li Zhang Min Zhang Chen Zhao Raj K Puri Uwe Scherf Weida Tong Russell D Wolfinger

Nat Biotechnol 2010 Aug 30;28(8):827-38. Epub 2010 Jul 30.

National Center for Toxicological Research, US Food and Drug Administration, Jefferson, Arkansas, USA.

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http://dx.doi.org/10.1038/nbt.1665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315840PMC
August 2010

Repeatability of published microarray gene expression analyses.

Nat Genet 2009 Feb 28;41(2):149-55. Epub 2008 Jan 28.

Clinical and Molecular Epidemiology Unit, Department of Hygiene and Epidemiology, University of Ioannina School of Medicine, Ioannina 45110, Greece.

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http://dx.doi.org/10.1038/ng.295DOI Listing
February 2009

Machine learning methods for predictive proteomics.

Brief Bioinform 2008 Mar 29;9(2):119-28. Epub 2008 Feb 29.

FBK, via Sommarive 18, I-38100 Povo (Trento), Italy.

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http://dx.doi.org/10.1093/bib/bbn008DOI Listing
March 2008

Algebraic stability indicators for ranked lists in molecular profiling.

Bioinformatics 2008 Jan 16;24(2):258-64. Epub 2007 Nov 16.

FBK, via Sommarive 18, I-38100 Povo (Trento), Italy.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btm550DOI Listing
January 2008

A grid environment for high-throughput proteomics.

IEEE Trans Nanobioscience 2007 Jun;6(2):117-23

University Magna Graecia, Catanzaro, Italy.

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http://dx.doi.org/10.1109/tnb.2007.897495DOI Listing
June 2007

Semisupervised learning for molecular profiling.

IEEE/ACM Trans Comput Biol Bioinform 2005 Apr-Jun;2(2):110-8

ITC-irst, via Sommarive 18, I-38050 Povo (Trento), Italy.

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http://ieeexplore.ieee.org/document/1438348/
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http://dx.doi.org/10.1109/TCBB.2005.28DOI Listing
November 2006

[Epidemiology of traffic accidents in the province of Trento: first results of an integrated surveillance system (MITRIS)].

Epidemiol Prev 2005 May-Aug;29(3-4):172-9

Servizio osservatorio epidemiologico, Azienda provinciale per i servizi sanitari, Trento.

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March 2006