Celine Noirot

Celine Noirot

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Celine Noirot

Celine Noirot

Publications by authors named "Celine Noirot"

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30Publications

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Evidence for late Pleistocene origin of Astyanax mexicanus cavefish.

BMC Evol Biol 2018 04 18;18(1):43. Epub 2018 Apr 18.

Évolution, Génomes, Comportement, Écologie, CNRS, IRD, Univ Paris-Sud. Université Paris-Saclay, F-91198, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1186/s12862-018-1156-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905186PMC
April 2018

A comparative transcriptomic approach to understanding the formation of cork.

Plant Mol Biol 2018 Jan 15;96(1-2):103-118. Epub 2017 Nov 15.

Laboratori del Suro, Faculty of Science, Biology Department, Universitat de Girona, C/ Maria Aurèlia Campmany 40, 17003, Girona, Spain.

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http://dx.doi.org/10.1007/s11103-017-0682-9DOI Listing
January 2018

Complete Genome Sequence and Annotation of the Strain HG001.

Genome Announc 2017 Aug 10;5(32). Epub 2017 Aug 10.

Université de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR 9002, Strasbourg, France

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http://dx.doi.org/10.1128/genomeA.00783-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552993PMC
August 2017

Whole blood transcriptome analysis reveals potential competition in metabolic pathways between negative energy balance and response to inflammatory challenge.

Sci Rep 2017 05 24;7(1):2379. Epub 2017 May 24.

Université de Toulouse, École Nationale Vétérinaire de Toulouse (ENVT), INRA, Interactions Hôtes - Agents Pathogènes (IHAP), F-31076, Toulouse, France.

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http://dx.doi.org/10.1038/s41598-017-02391-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5443788PMC
May 2017

Sequencing and characterization of a multi-organ Arctic charr transcriptome: A toolbox for investigating polymorphism and seasonal life in a high Arctic fish.

Mar Genomics 2016 Oct 22;29:45-53. Epub 2016 Apr 22.

Faculty of Biosciences, Fisheries and Economy, Department of Arctic and Marine Biology, UiT the Arctic University of Norway, NO-9037 Tormsø, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.margen.2016.04.006DOI Listing
October 2016

RNA editing in acute myeloid leukaemia with normal karyotype.

Br J Haematol 2016 06 7;173(5):788-90. Epub 2015 Aug 7.

Institut National de la Sante et de la Recherche Médicale, U1037, Centre de Recherches en Cancérologie de Toulouse U1037 and Laboratoire d'Excellence (Labex Toucan), Toulouse, France.

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http://dx.doi.org/10.1111/bjh.13631DOI Listing
June 2016

Jflow: a workflow management system for web applications.

Bioinformatics 2016 Feb 10;32(3):456-8. Epub 2015 Oct 10.

Plate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and Plate-forme SIGENAE, INRA, GenPhyse, Castanet-Tolosan Cedex, France.

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http://dx.doi.org/10.1093/bioinformatics/btv589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5859998PMC
February 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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http://dx.doi.org/10.1093/nar/gkv350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294PMC
July 2015

RNAbrowse: RNA-Seq de novo assembly results browser.

PLoS One 2014 13;9(5):e96821. Epub 2014 May 13.

Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France; Plate-forme SIGENAE/Génétique Cellulaire, INRA, Castanet-Tolosan, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0096821PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019526PMC
January 2015

De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species.

BMC Genomics 2014 Nov 18;15:987. Epub 2014 Nov 18.

Venoms and Biological Activities Laboratory, EA 4357, PRES-University of Toulouse, Jean-François Champollion University Center, Albi, France.

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http://dx.doi.org/10.1186/1471-2164-15-987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256838PMC
November 2014

Generation and characterization of the sea bass Dicentrarchus labrax brain and liver transcriptomes.

Gene 2014 Jul 21;544(1):56-66. Epub 2014 Apr 21.

Sorbonne Universités, UPMC Univ Paris 06, UMR 7232, BIOM, Observatoire Océanologique, F-66650, Banyuls/Mer, France; CNRS, UMR7232, BIOM, Avenue Fontaulé, 66650 Banyuls-sur-Mer, France.

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http://dx.doi.org/10.1016/j.gene.2014.04.032DOI Listing
July 2014

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing.

BMC Genomics 2013 Apr 10;14:236. Epub 2013 Apr 10.

Forestry and Forest Products Research Institute, Department of Forest Genetics, Tree Genetics Laboratory, 1 Matsunosato, Tsukuba, Ibaraki 305-8687 Japan.

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http://dx.doi.org/10.1186/1471-2164-14-236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639946PMC
April 2013

Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress.

Ecotoxicology 2012 Nov 20;21(8):2222-34. Epub 2012 Jul 20.

INRA, UMR0985 INRA-Agrocampus Ouest ESE, Equipe Ecotoxicologie et Qualité des Milieux Aquatiques, 65 rue de Saint-Brieuc, 35042, Rennes cedex, France.

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http://dx.doi.org/10.1007/s10646-012-0977-1DOI Listing
November 2012

NG6: Integrated next generation sequencing storage and processing environment.

BMC Genomics 2012 Sep 9;13:462. Epub 2012 Sep 9.

Plate-forme bio-informatique Genotoul, INRA, Biométrie et Intelligence Artificielle, BP 52627, 31326, Castanet-Tolosan Cedex, France.

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http://dx.doi.org/10.1186/1471-2164-13-462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3444930PMC
September 2012

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus.

BMC Genomics 2011 Nov 2;12:538. Epub 2011 Nov 2.

CIRAD, UMR AGAP, Campus de Baillarguet TA 10C, F-34398 Montpellier Cedex 5, France.

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http://dx.doi.org/10.1186/1471-2164-12-538DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248028PMC
November 2011

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Authors:
Nevin D Young Frédéric Debellé Giles E D Oldroyd Rene Geurts Steven B Cannon Michael K Udvardi Vagner A Benedito Klaus F X Mayer Jérôme Gouzy Heiko Schoof Yves Van de Peer Sebastian Proost Douglas R Cook Blake C Meyers Manuel Spannagl Foo Cheung Stéphane De Mita Vivek Krishnakumar Heidrun Gundlach Shiguo Zhou Joann Mudge Arvind K Bharti Jeremy D Murray Marina A Naoumkina Benjamin Rosen Kevin A T Silverstein Haibao Tang Stephane Rombauts Patrick X Zhao Peng Zhou Valérie Barbe Philippe Bardou Michael Bechner Arnaud Bellec Anne Berger Hélène Bergès Shelby Bidwell Ton Bisseling Nathalie Choisne Arnaud Couloux Roxanne Denny Shweta Deshpande Xinbin Dai Jeff J Doyle Anne-Marie Dudez Andrew D Farmer Stéphanie Fouteau Carolien Franken Chrystel Gibelin John Gish Steven Goldstein Alvaro J González Pamela J Green Asis Hallab Marijke Hartog Axin Hua Sean J Humphray Dong-Hoon Jeong Yi Jing Anika Jöcker Steve M Kenton Dong-Jin Kim Kathrin Klee Hongshing Lai Chunting Lang Shaoping Lin Simone L Macmil Ghislaine Magdelenat Lucy Matthews Jamison McCorrison Erin L Monaghan Jeong-Hwan Mun Fares Z Najar Christine Nicholson Céline Noirot Majesta O'Bleness Charles R Paule Julie Poulain Florent Prion Baifang Qin Chunmei Qu Ernest F Retzel Claire Riddle Erika Sallet Sylvie Samain Nicolas Samson Iryna Sanders Olivier Saurat Claude Scarpelli Thomas Schiex Béatrice Segurens Andrew J Severin D Janine Sherrier Ruihua Shi Sarah Sims Susan R Singer Senjuti Sinharoy Lieven Sterck Agnès Viollet Bing-Bing Wang Keqin Wang Mingyi Wang Xiaohong Wang Jens Warfsmann Jean Weissenbach Doug D White Jim D White Graham B Wiley Patrick Wincker Yanbo Xing Limei Yang Ziyun Yao Fu Ying Jixian Zhai Liping Zhou Antoine Zuber Jean Dénarié Richard A Dixon Gregory D May David C Schwartz Jane Rogers Francis Quétier Christopher D Town Bruce A Roe

Nature 2011 Nov 16;480(7378):520-4. Epub 2011 Nov 16.

Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1038/nature10625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272368PMC
November 2011

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool.

BMC Res Notes 2011 May 26;4:149. Epub 2011 May 26.

Plate-forme bio-informatique Genotoul, INRA, Biométrie et Intelligence Artificielle/Génétique Cellulaire, BP 52627, 31326 Castanet-Tolosan Cedex, France.

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http://dx.doi.org/10.1186/1756-0500-4-149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3117718PMC
May 2011

LeARN: a platform for detecting, clustering and annotating non-coding RNAs.

BMC Bioinformatics 2008 Jan 14;9:21. Epub 2008 Jan 14.

Laboratoire Interactions Plantes Micro-organismes UMR441/2594, INRA/CNRS, F-31320 Castanet Tolosan, France.

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http://dx.doi.org/10.1186/1471-2105-9-21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2241582PMC
January 2008