Celeste J Brown

Celeste J Brown

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Celeste J Brown

Publications by authors named "Celeste J Brown"

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Genetic diversity of potato virus Y (PVY): sequence analyses reveal ten novel PVY recombinant structures.

Arch Virol 2018 Jan 22;163(1):23-32. Epub 2017 Sep 22.

Department of PSES, University of Idaho, Moscow, ID, 83844-2339, USA.

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http://dx.doi.org/10.1007/s00705-017-3568-xDOI Listing
January 2018

Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations.

PLoS Comput Biol 2018 01 24;14(1):e1005974. Epub 2018 Jan 24.

Department of Biological Sciences, University of Idaho, Moscow, ID, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1005974DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798944PMC
January 2018

The development of a specific pathogen free (SPF) barrier colony of marmosets () for aging research.

Aging (Albany NY) 2017 12;9(12):2544-2558

Barshop Institute for Longevity and Aging Studies, University of Texas Health San Antonio, TX 78245, USA.

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http://dx.doi.org/10.18632/aging.101340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5764392PMC
December 2017

New Perspectives on Ebola Virus Evolution.

PLoS One 2016 1;11(8):e0160410. Epub 2016 Aug 1.

Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, Idaho, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0160410PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968807PMC
August 2017

Phylogenetic study of recombinant strains of Potato virus Y.

Virology 2017 07 8;507:40-52. Epub 2017 Apr 8.

Department of PSES, University of Idaho, Moscow, ID, USA; Bioinformatics and Computational Biology Program, University of Idaho, Moscow, ID, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2017.03.018DOI Listing
July 2017

Annotation of plasmid genes.

Plasmid 2017 05 30;91:61-67. Epub 2017 Mar 30.

Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.

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http://dx.doi.org/10.1016/j.plasmid.2017.03.006DOI Listing
May 2017

Human Cytomegalovirus nuclear egress and secondary envelopment are negatively affected in the absence of cellular p53.

Virology 2016 10 5;497:279-293. Epub 2016 Aug 5.

Department of Biological Sciences and Center for Reproductive Biology, University of Idaho, Moscow, ID, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00426822163018
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http://dx.doi.org/10.1016/j.virol.2016.07.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026618PMC
October 2016

High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands.

Microb Drug Resist 2016 Jun 15;22(4):312-20. Epub 2015 Dec 15.

1 Department of Biology, Point Loma Nazarene University , San Diego, California.

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http://dx.doi.org/10.1089/mdr.2015.0197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4913485PMC
June 2016

Effects of low dose estrogen therapy on the vaginal microbiomes of women with atrophic vaginitis.

Sci Rep 2016 04 22;6:24380. Epub 2016 Apr 22.

Biological Sciences, University of Idaho, Moscow, ID, 83844, Russia.

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http://dx.doi.org/10.1038/srep24380DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840317PMC
April 2016

Initiating a watch list for Ebola virus antibody escape mutations.

PeerJ 2016 16;4:e1674. Epub 2016 Feb 16.

Center for Modeling Complex Interactions, University of Idaho, Moscow, ID, United States; Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID, United States; Department of Physics, University of Idaho, Moscow, ID, United States.

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http://dx.doi.org/10.7717/peerj.1674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4768679PMC
February 2016

Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes.

FEMS Microbiol Ecol 2016 Jan 2;92(1). Epub 2015 Dec 2.

State Key Laboratory of Forest and Soil Ecology, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China

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http://dx.doi.org/10.1093/femsec/fiv151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809973PMC
January 2016

Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp.

Pathog Dis 2015 Jun 15;73(4). Epub 2015 Mar 15.

Department of Biological Sciences and Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow ID 83844, USA.

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http://dx.doi.org/10.1093/femspd/ftv020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542641PMC
June 2015

The impact of spatial structure on viral genomic diversity generated during adaptation to thermal stress.

PLoS One 2014 12;9(2):e88702. Epub 2014 Feb 12.

Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, Idaho, United States of America ; Department of Mathematics, University of Idaho, Moscow, Idaho, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088702PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3922989PMC
January 2015

The broad-host-range plasmid pSFA231 isolated from petroleum-contaminated sediment represents a new member of the PromA plasmid family.

Front Microbiol 2014 12;5:777. Epub 2015 Jan 12.

State Key Laboratory of Forest and Soil Ecology, Institute of Applied Ecology, Chinese Academy of Sciences Shenyang, China.

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http://dx.doi.org/10.3389/fmicb.2014.00777DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4290620PMC
January 2015

The bacterial microbiome in paired vaginal and vestibular samples from women with vulvar vestibulitis syndrome.

Pathog Dis 2014 Dec 10;72(3):161-6. Epub 2014 Jul 10.

Division of Immunology and Infectious Diseases, Department of Obstetrics and Gynecology, Weill Cornell Medical College, New York, NY, USA.

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https://academic.oup.com/femspd/article-lookup/doi/10.1111/2
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http://dx.doi.org/10.1111/2049-632X.12197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4262620PMC
December 2014

Diverse broad-host-range plasmids from freshwater carry few accessory genes.

Appl Environ Microbiol 2013 Dec 4;79(24):7684-95. Epub 2013 Oct 4.

Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, Idaho, USA.

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http://dx.doi.org/10.1128/AEM.02252-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3837812PMC
December 2013

Comparative genomics of IncP-1ε plasmids from water environments reveals diverse and unique accessory genetic elements.

Plasmid 2013 Nov 2;70(3):412-9. Epub 2013 Jul 2.

Department of Biology & CESAM, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal. Electronic address:

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http://dx.doi.org/10.1016/j.plasmid.2013.06.002DOI Listing
November 2013

Host range diversification within the IncP-1 plasmid group.

Microbiology 2013 Nov 3;159(Pt 11):2303-2315. Epub 2013 Sep 3.

Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.

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http://dx.doi.org/10.1099/mic.0.068387-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836486PMC
November 2013

HCMV-infected cells maintain efficient nucleotide excision repair of the viral genome while abrogating repair of the host genome.

PLoS Pathog 2012 29;8(11):e1003038. Epub 2012 Nov 29.

Department of Biological Sciences and Center for Reproductive Biology, University of Idaho, Moscow, Idaho, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1003038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510244PMC
April 2013

Intrinsically disordered regions of p53 family are highly diversified in evolution.

Biochim Biophys Acta 2013 Apr 22;1834(4):725-38. Epub 2013 Jan 22.

Department of Molecular Medicine, University of South Florida, Tampa, FL 33612, USA.

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http://dx.doi.org/10.1016/j.bbapap.2013.01.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905691PMC
April 2013

Adaptive regulatory substitutions affect multiple stages in the life cycle of the bacteriophage φX174.

BMC Evol Biol 2013 Mar 18;13:66. Epub 2013 Mar 18.

Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.

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http://dx.doi.org/10.1186/1471-2148-13-66DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608072PMC
March 2013

Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees.

Mol Biol Evol 2013 Jan 30;30(1):154-66. Epub 2012 Aug 30.

Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, ID, USA.

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http://dx.doi.org/10.1093/molbev/mss210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525142PMC
January 2013

Differential transcription of bacteriophage φX174 genes at 37 °C and 42 °C.

PLoS One 2012 23;7(4):e35909. Epub 2012 Apr 23.

Department of Biological Sciences, University of Idaho, Moscow, Idaho, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035909PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335065PMC
September 2012

The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution.

Plasmid 2012 Jul 2;68(1):13-24. Epub 2012 Feb 2.

Institute for Genome Research and Systems Biology, Center for Biotechnology, Bielefeld University, D-33594 Bielefeld, Germany.

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http://dx.doi.org/10.1016/j.plasmid.2012.01.011DOI Listing
July 2012

Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes.

Appl Environ Microbiol 2011 Nov 23;77(22):7975-83. Epub 2011 Sep 23.

Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies-IBEST, University of Idaho, Moscow, ID 83844-3051, USA.

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http://dx.doi.org/10.1128/AEM.05439-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3209000PMC
November 2011

Evolution and disorder.

Curr Opin Struct Biol 2011 Jun 7;21(3):441-6. Epub 2011 Apr 7.

Department of Biological Sciences, IBEST, University of Idaho, Moscow, ID 83844-3051, United States.

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http://dx.doi.org/10.1016/j.sbi.2011.02.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3112239PMC
June 2011

Positive selection at high temperature reduces gene transcription in the bacteriophage ϕX174.

BMC Evol Biol 2010 Dec 3;10:378. Epub 2010 Dec 3.

Department of Biological Sciences, PO Box 443051, University of Idaho, Moscow, ID 83843-3051, USA.

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http://dx.doi.org/10.1186/1471-2148-10-378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3003669PMC
December 2010

Predicting plasmid promiscuity based on genomic signature.

J Bacteriol 2010 Nov 17;192(22):6045-55. Epub 2010 Sep 17.

Department of Biological Sciences, University of Idaho, Moscow, ID 83844-3051, USA.

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http://dx.doi.org/10.1128/JB.00277-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2976448PMC
November 2010

Experimental evolution of viruses: Microviridae as a model system.

Philos Trans R Soc Lond B Biol Sci 2010 Aug;365(1552):2495-501

Department of Biological Sciences, University of Idaho, Moscow, ID, USA.

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http://dx.doi.org/10.1098/rstb.2010.0053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935103PMC
August 2010

Comparing models of evolution for ordered and disordered proteins.

Mol Biol Evol 2010 Mar 18;27(3):609-21. Epub 2009 Nov 18.

Department of Biological Sciences, University of Idaho, USA.

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http://dx.doi.org/10.1093/molbev/msp277DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822292PMC
March 2010

Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone.

Plasmid 2010 Mar 16;63(2):98-107. Epub 2009 Dec 16.

Department of Biological Sciences, Initiative for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844-3051, USA.

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http://dx.doi.org/10.1016/j.plasmid.2009.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2819548PMC
March 2010

Sequence characteristics of potato virus Y recombinants.

J Gen Virol 2009 Dec 19;90(Pt 12):3033-3041. Epub 2009 Aug 19.

International Institute of Tropical Agriculture, Kampala, Uganda.

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http://dx.doi.org/10.1099/vir.0.014142-0DOI Listing
December 2009

Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids.

Antonie Van Leeuwenhoek 2009 Aug 4;96(2):193-204. Epub 2009 Mar 4.

Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1007/s10482-009-9316-9DOI Listing
August 2009

Comparison of correspondence analysis methods for synonymous codon usage in bacteria.

DNA Res 2008 Dec 21;15(6):357-65. Epub 2008 Oct 21.

Department of Biological Sciences and Initiative for Bioinformatics and Evolutionary Studies, University of Idaho, PO Box 443051, Moscow, Idaho 83844-3051, USA.

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http://dx.doi.org/10.1093/dnares/dsn028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2608848PMC
December 2008

Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes.

Nucleic Acids Res 2008 Dec 25;36(22):e147. Epub 2008 Oct 25.

Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.

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http://dx.doi.org/10.1093/nar/gkn753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2602791PMC
December 2008

TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder.

Protein Pept Lett 2008 ;15(9):956-63

Department of Computer and Information Science, Indiana University-Purdue University Indianapolis, IN 46202, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2676888PMC
http://dx.doi.org/10.2174/092986608785849164DOI Listing
December 2008

Loss of LINE-1 activity in the megabats.

Genetics 2008 Jan;178(1):393-404

Department of Biological Sciences, University of Idaho, Moscow, Idaho 83844-3051, USA.

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http://dx.doi.org/10.1534/genetics.107.080275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206088PMC
January 2008

Dynamic behavior of an intrinsically unstructured linker domain is conserved in the face of negligible amino acid sequence conservation.

J Mol Evol 2007 Sep 25;65(3):277-88. Epub 2007 Aug 25.

Department of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, ID 83844-3052, USA.

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http://dx.doi.org/10.1007/s00239-007-9011-2DOI Listing
September 2007

Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women.

ISME J 2007 Jun 10;1(2):121-33. Epub 2007 May 10.

Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.

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http://dx.doi.org/10.1038/ismej.2007.12DOI Listing
June 2007

Preliminary characterization of the normal microbiota of the human vulva using cultivation-independent methods.

J Med Microbiol 2007 Feb;56(Pt 2):271-276

Department of Biological Sciences, University of Idaho, Moscow, ID 83844-3051, USA.

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http://dx.doi.org/10.1099/jmm.0.46607-0DOI Listing
February 2007

Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community.

Appl Environ Microbiol 2005 Sep;71(9):5309-17

Department of Biological Sciences, 252 Life Sciences South, University of Idaho, Moscow, ID 83844-3051, USA.

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http://dx.doi.org/10.1128/AEM.71.9.5309-5317.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1214629PMC
September 2005

Comparing and combining predictors of mostly disordered proteins.

Biochemistry 2005 Feb;44(6):1989-2000

Molecular Kinetics, Inc., 6201 La Pas Trail, Suite 160, Indianapolis, Indiana 46268, USA.

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https://pubs.acs.org/doi/10.1021/bi047993o
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http://dx.doi.org/10.1021/bi047993oDOI Listing
February 2005

Optimizing long intrinsic disorder predictors with protein evolutionary information.

J Bioinform Comput Biol 2005 Feb;3(1):35-60

Center for Information Science and Technology, Temple University, Philadelphia, PA 19122, USA.

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http://dx.doi.org/10.1142/s0219720005000886DOI Listing
February 2005

DisProt: a database of protein disorder.

Bioinformatics 2005 Jan 13;21(1):137-40. Epub 2004 Aug 13.

Center for Information Science and Technology, Temple University Philadelphia, PA 19122, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth476DOI Listing
January 2005

Molecular microbial ecology: land of the one-eyed king.

Curr Opin Microbiol 2004 Jun;7(3):210-20

Department of Biological Sciences, University of Idaho, Moscow, Idaho, USA.

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http://dx.doi.org/10.1016/j.mib.2004.04.015DOI Listing
June 2004

The importance of intrinsic disorder for protein phosphorylation.

Nucleic Acids Res 2004 11;32(3):1037-49. Epub 2004 Feb 11.

School of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkh253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC373391PMC
May 2004

Identification and functions of usefully disordered proteins.

Adv Protein Chem 2002 ;62:25-49

School of Molecular Biosciences, Washington State University, Pullman, Washington 99164, USA.

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http://dx.doi.org/10.1016/s0065-3233(02)62004-2DOI Listing
February 2004

Predicting intrinsic disorder from amino acid sequence.

Proteins 2003 ;53 Suppl 6:566-72

Center for Information Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, USA.

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http://dx.doi.org/10.1002/prot.10532DOI Listing
January 2004

Protein flexibility and intrinsic disorder.

Protein Sci 2004 Jan;13(1):71-80

Center for Information Science and Technology, Temple University, Philadelphia, PA 19122, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2286519PMC
http://dx.doi.org/10.1110/ps.03128904DOI Listing
January 2004

Flavors of protein disorder.

Proteins 2003 Sep;52(4):573-84

Center for Information Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, USA.

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http://dx.doi.org/10.1002/prot.10437DOI Listing
September 2003

Prediction of boundaries between intrinsically ordered and disordered protein regions.

Pac Symp Biocomput 2003 :216-27

Center for Information Science and Technology, Temple University, USA.

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August 2003

Improving sequence alignments for intrinsically disordered proteins.

Pac Symp Biocomput 2002 :589-600

Center for Information Science and Technology, Temple University, USA.

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October 2002

Intrinsic disorder in cell-signaling and cancer-associated proteins.

J Mol Biol 2002 Oct;323(3):573-84

Department of Biochemistry and Biophysics, School of Molecular Biosciences, Washington State University, Pullman, WA 99164-4660, USA.

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http://dx.doi.org/10.1016/s0022-2836(02)00969-5DOI Listing
October 2002

Evolutionary rate heterogeneity in proteins with long disordered regions.

J Mol Evol 2002 Jul;55(1):104-10

School of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.

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http://dx.doi.org/10.1007/s00239-001-2309-6DOI Listing
July 2002

The Protein Trinity: Structure/Function Relationships That Include Intrinsic Disorder.

ScientificWorldJournal 2002 25;2:49-50. Epub 2002 Jun 25.

Center for Information Sciences Temple University Philadelphia, PA 19122, USA.

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http://dx.doi.org/10.1100/tsw.2002.25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009265PMC
June 2002

Intrinsic disorder and protein function.

Biochemistry 2002 May;41(21):6573-82

School of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.

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http://dx.doi.org/10.1021/bi012159+DOI Listing
May 2002