Cathy Riemer

Cathy Riemer

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Cathy Riemer

Cathy Riemer

Publications by authors named "Cathy Riemer"

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Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.

Nucleic Acids Res 2014 Jan 16;42(Database issue):D1063-9. Epub 2013 Oct 16.

The Pennsylvania State University, Center for Comparative Genomics and Bioinformatics, University Park, PA, USA, Department of Applied Biomedical Science, Faculty of Health Sciences, University of Malta, Msida, Malta, MGC-Department of Cell Biology and Genetics, Erasmus MC, Faculty of Medicine and Health Sciences, Rotterdam, The Netherlands, Department of Computer Engineering and Informatics, University of Patras, Faculty of Engineering, Patras, Greece, Department of Pharmacy, University of Patras, School of Health Sciences, Patras, Greece, Department of Medical Genetics, Laboratory of Cytogenetics, Institute of Biology, Nantes, France, Hôpital Edouard Herriot, Unité de Pathologie Moléculaire du Globule Rouge, Lyon, France, Department of Computer and Informatics Engineering, Technological Educational Institute of Western Greece, Patras, Greece, INSERM U955, CHU Henri Mondor, Creteil, France and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.

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http://nar.oxfordjournals.org/content/early/2013/10/16/nar.g
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkt911
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http://dx.doi.org/10.1093/nar/gkt911DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964999PMC
January 2014

Galaxy tools to study genome diversity.

Gigascience 2013 Dec 30;2(1):17. Epub 2013 Dec 30.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/2047-217X-2-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877877PMC
December 2013

Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome.

Curr Protoc Bioinformatics 2012 Sep;Chapter 15:Unit15.2

Pennsylvania State University, University Park, PA, USA.

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http://dx.doi.org/10.1002/0471250953.bi1502s39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548453PMC
September 2012

Conversion events in gene clusters.

BMC Evol Biol 2011 Jul 28;11:226. Epub 2011 Jul 28.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802 USA.

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http://dx.doi.org/10.1186/1471-2148-11-226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161012PMC
July 2011

Evaluation of methods for detecting conversion events in gene clusters.

BMC Bioinformatics 2011 Feb 15;12 Suppl 1:S45. Epub 2011 Feb 15.

Center for Comparative Genomics and Bioinformatics, 506 Wartik Lab, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/1471-2105-12-S1-S45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044302PMC
February 2011

MultiPipMaker: a comparative alignment server for multiple DNA sequences.

Curr Protoc Bioinformatics 2010 Jun;Chapter 10:Unit10.4

The Pennsylvania State University, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1002/0471250953.bi1004s30DOI Listing
June 2010

HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update.

Hum Mutat 2007 Feb;28(2):206

The Pennsylvania State University, Center for Comparative Genomics and Bioinformatics, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1002/humu.9479DOI Listing
February 2007

Galaxy: a platform for interactive large-scale genome analysis.

Genome Res 2005 Oct 16;15(10):1451-5. Epub 2005 Sep 16.

Center for Comparative Genomics and Bioinformatics, Huck Institutes for Life Sciences, Penn State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1101/gr.4086505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1240089PMC
October 2005

MultiPipMaker: comparative alignment server for multiple DNA sequences.

Curr Protoc Bioinformatics 2005 Apr;Chapter 10:Unit10.4

The Pennsylvania State University, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1002/0471250953.bi1004s9DOI Listing
April 2005

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.

Nucleic Acids Res 2004 Jan;32(Database issue):D537-41

MGC-Department of Cell Biology and Genetics, Erasmus MC, Faculty of Medicine and Health Sciences, PO Box 1738, 3000 DR, Rotterdam, The Netherlands.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkh006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308741PMC
January 2004

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences.

Nucleic Acids Res 2003 Jul;31(13):3518-24

Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168985PMC
http://dx.doi.org/10.1093/nar/gkg579DOI Listing
July 2003

EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.

Nucleic Acids Res 2003 Jul;31(13):3527-32

Informatics Research, Celera/Applied Biosystems, 45 W. Gude Drive, Rockville, MD 20850, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168958PMC
http://dx.doi.org/10.1093/nar/gkg551DOI Listing
July 2003

GALA, a database for genomic sequence alignments and annotations.

Genome Res 2003 Apr;13(4):732-41

Department of Computer Science and Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1101/gr.603103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430176PMC
April 2003

PipMaker: a World Wide Web server for genomic sequence alignments.

Curr Protoc Bioinformatics 2003 Feb;Chapter 10:Unit 10.2

The Pennsylvania State University, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1002/0471250953.bi1002s00DOI Listing
February 2003

PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.

Genomics 2002 Dec;80(6):681-90

Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1006/geno.2002.7018DOI Listing
December 2002

HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server.

Hum Mutat 2002 Mar;19(3):225-33

Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.

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http://doi.wiley.com/10.1002/humu.10044
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http://dx.doi.org/10.1002/humu.10044DOI Listing
March 2002