Catherine A Ball

Catherine A Ball

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Catherine A Ball

Catherine A Ball

Publications by authors named "Catherine A Ball"

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PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Nucleic Acids Res 2014 Jan 26;42(Database issue):D677-84. Epub 2013 Nov 26.

Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Department of Biology, Texas A&M University, College Station, TX, 77843, USA, Artificial Intelligence Center, SRI International, Menlo Park, CA 94025, USA and Deptartment of Preventive Medicine, University of Southern California, Los Angeles, CA 90089, USA.

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http://dx.doi.org/10.1093/nar/gkt1203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965092PMC
January 2014

Repeatability of published microarray gene expression analyses.

Nat Genet 2009 Feb 28;41(2):149-55. Epub 2008 Jan 28.

Clinical and Molecular Epidemiology Unit, Department of Hygiene and Epidemiology, University of Ioannina School of Medicine, Ioannina 45110, Greece.

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http://dx.doi.org/10.1038/ng.295DOI Listing
February 2009

Implementation of GenePattern within the Stanford Microarray Database.

Nucleic Acids Res 2009 Jan 25;37(Database issue):D898-901. Epub 2008 Oct 25.

Department of Genetics, Stanford University School of Medicine, CA 94305, USA.

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http://dx.doi.org/10.1093/nar/gkn786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686537PMC
January 2009

Domain-specific data sharing in neuroscience: what do we have to learn from each other?

Neuroinformatics 2008 13;6(2):117-21. Epub 2008 May 13.

Laboratory of Neuro Imaging (LONI), Department of Neurology, David Geffen School of Medicine, University of California Los Angeles, 635 Charles E. Young Drive SW, Suite 225, Los Angeles, CA 90095-7334, USA.

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http://dx.doi.org/10.1007/s12021-008-9019-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319052PMC
November 2008

The Stanford Tissue Microarray Database.

Nucleic Acids Res 2008 Jan 7;36(Database issue):D871-7. Epub 2007 Nov 7.

Department of Biochemistry, Stanford University School of Medicine, Howard Hughes Medical Institute, Stanford, CA, USA.

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http://dx.doi.org/10.1093/nar/gkm861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238948PMC
January 2008

The XBabelPhish MAGE-ML and XML translator.

BMC Bioinformatics 2008 Jan 18;9:28. Epub 2008 Jan 18.

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305-5307, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-9-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2233607PMC
January 2008

MGED standards: work in progress.

OMICS 2006 ;10(2):138-44

Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94301, USA.

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http://dx.doi.org/10.1089/omi.2006.10.138DOI Listing
November 2007

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

BMC Bioinformatics 2007 Sep 13;8:338. Epub 2007 Sep 13.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA.

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http://dx.doi.org/10.1186/1471-2105-8-338DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2080642PMC
September 2007

Are we stuck in the standards?

Authors:
Catherine A Ball

Nat Biotechnol 2006 Nov;24(11):1374-6

Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94305-5307, USA.

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http://dx.doi.org/10.1038/nbt1106-1374DOI Listing
November 2006

The Stanford Microarray Database: a user's guide.

Methods Mol Biol 2006 ;338:191-208

Department of Biochemistry, Stanford University Medical School, Stanford, CA, USA.

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http://dx.doi.org/10.1385/1-59745-097-9:191DOI Listing
September 2006

Storage and retrieval of microarray data and open source microarray database software.

Mol Biotechnol 2005 Jul;30(3):239-51

Department of Genetics, Stanford University Medical School, CA 94305-5120, USA.

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http://dx.doi.org/10.1385/MB:30:3:239DOI Listing
July 2005

Caryoscope: an Open Source Java application for viewing microarray data in a genomic context.

BMC Bioinformatics 2004 Oct 15;5:151. Epub 2004 Oct 15.

Dept. of Genetics, 300 Pasteur Drive, Stanford University Medical School, Stanford, CA 94305-5120, USA.

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http://dx.doi.org/10.1186/1471-2105-5-151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC528725PMC
October 2004

Funding high-throughput data sharing.

Nat Biotechnol 2004 Sep;22(9):1179-83

Department of Biochemistry, Stanford University School of Medicine, 269 Campus Drive, Stanford, CA 94305-5307, USA.

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http://web.stanford.edu/group/sherlocklab/pdfs/BALL_NATURE_B
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http://www.nature.com/doifinder/10.1038/nbt0904-1179
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http://dx.doi.org/10.1038/nbt0904-1179DOI Listing
September 2004

Microarray databases: storage and retrieval of microarray data.

Methods Mol Biol 2003 ;224:235-48

Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA.

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http://dx.doi.org/10.1385/1-59259-364-X:235DOI Listing
January 2004

The Stanford Microarray Database: data access and quality assessment tools.

Nucleic Acids Res 2003 Jan;31(1):94-6

Department of Genetics, Center for Clinical Sciences Research, 269 Campus Drive, Room 2255b, Stanford University, Stanford, CA 94305-5163, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165525PMC
http://dx.doi.org/10.1093/nar/gkg078DOI Listing
January 2003

Microarray databases: standards and ontologies.

Nat Genet 2002 Dec;32 Suppl:469-73

Center for Bioinformatics and Department of Genetics, University of Pennsylvania, 423 Guardian Drive, Philadelphia, Pennsylvania 19104-6021, USA.

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http://www.nature.com/doifinder/10.1038/ng1028
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http://dx.doi.org/10.1038/ng1028DOI Listing
December 2002