Carsten Wiuf

Carsten Wiuf

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Carsten Wiuf

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General theory for stochastic admixture graphs and F-statistics.

Theor Popul Biol 2019 02 15;125:56-66. Epub 2018 Dec 15.

Department of Mathematical Sciences, University of Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.tpb.2018.12.002DOI Listing
February 2019

Some properties of the conditioned reconstructed process with Bernoulli sampling.

Authors:
Carsten Wiuf

Theor Popul Biol 2018 07 13;122:36-45. Epub 2018 Feb 13.

Department of Mathematical Sciences, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.tpb.2018.02.003DOI Listing
July 2018

Node balanced steady states: Unifying and generalizing complex and detailed balanced steady states.

Math Biosci 2018 07 28;301:68-82. Epub 2018 Mar 28.

Department of Mathematical Sciences, University of Copenhagen, Universitetsparken 5, Copenhagen, 2100, Denmark. Electronic address: http://www.math.ku.dk/~wiuf/.

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http://dx.doi.org/10.1016/j.mbs.2018.03.002DOI Listing
July 2018

Powerful Inference with the D-Statistic on Low-Coverage Whole-Genome Data.

G3 (Bethesda) 2018 02 2;8(2):551-566. Epub 2018 Feb 2.

Center for Bioinformatics, Faculty of Science, University of Copenhagen, 2100, Denmark.

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http://dx.doi.org/10.1534/g3.117.300192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5919751PMC
February 2018

Identifying parameter regions for multistationarity.

PLoS Comput Biol 2017 Oct 3;13(10):e1005751. Epub 2017 Oct 3.

Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1371/journal.pcbi.1005751DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626113PMC
October 2017

Intermediates and Generic Convergence to Equilibria.

Bull Math Biol 2017 Jul 15;79(7):1662-1686. Epub 2017 Jun 15.

Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/s11538-017-0303-4DOI Listing
July 2017

Intermediates, catalysts, persistence, and boundary steady states.

J Math Biol 2017 03 1;74(4):887-932. Epub 2016 Aug 1.

Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/s00285-016-1046-9DOI Listing
March 2017

Graphical reduction of reaction networks by linear elimination of species.

J Math Biol 2017 01 24;74(1-2):195-237. Epub 2016 May 24.

Department of Mathematical Sciences. University of Copenhagen, Universitetsparken 5, 2100, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/s00285-016-1028-yDOI Listing
January 2017

Core signalling motif displaying multistability through multi-state enzymes.

J R Soc Interface 2016 10;13(123)

School of Life Sciences, University of Warwick, Coventry, UK

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http://dx.doi.org/10.1098/rsif.2016.0524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5095215PMC
October 2016

Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks.

Bull Math Biol 2015 Sep 16;77(9):1744-67. Epub 2015 Sep 16.

Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.

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https://www.math.wisc.edu/~anderson/papers/LyapunovCRNT_Revi
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http://link.springer.com/10.1007/s11538-015-0102-8
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http://dx.doi.org/10.1007/s11538-015-0102-8DOI Listing
September 2015

Finding the positive feedback loops underlying multi-stationarity.

BMC Syst Biol 2015 May 28;9:22. Epub 2015 May 28.

Department of Mathematical Sciences, University of Copenhagen, Universitetsparken 5, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s12918-015-0164-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4451965PMC
May 2015

Large scale identification and categorization of protein sequences using structured logistic regression.

PLoS One 2014 20;9(1):e85139. Epub 2014 Jan 20.

Centre for Membrane Pumps in Cells and Disease - PUMPKIN, Danish National Research Foundation, Aarhus C, Denmark ; Bioinformatics Research Centre, Aarhus University, Aarhus C, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0085139PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3896382PMC
December 2014

Phosphorelays provide tunable signal processing capabilities for the cell.

PLoS Comput Biol 2013 7;9(11):e1003322. Epub 2013 Nov 7.

Systems Biology Program, College of Engineering, Computing and Mathematics, University of Exeter, Exeter, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1003322DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820541PMC
July 2014

Simplifying biochemical models with intermediate species.

J R Soc Interface 2013 Oct 24;10(87):20130484. Epub 2013 Jul 24.

Department of Mathematical Sciences, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1098/rsif.2013.0484DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758008PMC
October 2013

A computational method to preclude multistationarity in networks of interacting species.

Bioinformatics 2013 Sep 9;29(18):2327-34. Epub 2013 Jul 9.

Department of Mathematical Sciences, University of Copenhagen, 2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btt400DOI Listing
September 2013

Cellular compartments cause multistability and allow cells to process more information.

Biophys J 2013 Apr;104(8):1824-31

Division of Molecular Biosciences, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1016/j.bpj.2013.02.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3628565PMC
April 2013

Signaling cascades: consequences of varying substrate and phosphatase levels.

Adv Exp Med Biol 2012 ;736:81-94

Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.

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http://link.springer.com/10.1007/978-1-4419-7210-1_4
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http://dx.doi.org/10.1007/978-1-4419-7210-1_4DOI Listing
January 2013

Variable elimination in post-translational modification reaction networks with mass-action kinetics.

J Math Biol 2013 Jan 5;66(1-2):281-310. Epub 2012 Feb 5.

Department of Mathematics, University of Copenhagen, Universitetsparken 5, Copenhagen, 2100, Denmark.

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http://dx.doi.org/10.1007/s00285-012-0510-4DOI Listing
January 2013

A bimodular mechanism of calcium control in eukaryotes.

Nature 2012 Nov 21;491(7424):468-72. Epub 2012 Oct 21.

Centre for Membrane Pumps in Cells and Disease - PUMPKIN, Aarhus University, Gustav Wieds Vej 10c, DK-8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1038/nature11539DOI Listing
November 2012

Enzyme-sharing as a cause of multi-stationarity in signalling systems.

J R Soc Interface 2012 Jun 2;9(71):1224-32. Epub 2011 Nov 2.

Bioinformatics Research Centre, Aarhus University, C. F. Møllers Allé 8, 8000 Aarhus, Denmark.

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http://dx.doi.org/10.1098/rsif.2011.0664DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3350728PMC
June 2012

Monitoring endangered freshwater biodiversity using environmental DNA.

Mol Ecol 2012 Jun 13;21(11):2565-73. Epub 2011 Dec 13.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1111/j.1365-294X.2011.05418.xDOI Listing
June 2012

Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models.

J Theor Biol 2012 May 13;300:7-18. Epub 2012 Jan 13.

Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.

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https://linkinghub.elsevier.com/retrieve/pii/S00225193120000
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http://dx.doi.org/10.1016/j.jtbi.2012.01.007DOI Listing
May 2012

An algebraic approach to signaling cascades with N layers.

Bull Math Biol 2012 Jan 27;74(1):45-72. Epub 2011 Apr 27.

Universitat de Barcelona, Barcelona, Spain.

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http://link.springer.com/10.1007/s11538-011-9658-0
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http://dx.doi.org/10.1007/s11538-011-9658-0DOI Listing
January 2012

Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck.

Radiother Oncol 2012 Jan 11;102(1):122-9. Epub 2011 Oct 11.

Department of Experimental Clinical Oncology, Aarhus University Hospital, Arahus C, Denmark.

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http://dx.doi.org/10.1016/j.radonc.2011.09.010DOI Listing
January 2012

Common variants at VRK2 and TCF4 conferring risk of schizophrenia.

Hum Mol Genet 2011 Oct 26;20(20):4076-81. Epub 2011 Jul 26.

deCODE Genetics, IS-101 Reykjavik, Iceland.

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https://academic.oup.com/hmg/article-lookup/doi/10.1093/hmg/
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http://dx.doi.org/10.1093/hmg/ddr325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3298077PMC
October 2011

An Algebro-topological description of protein domain structure.

PLoS One 2011 24;6(5):e19670. Epub 2011 May 24.

Center for the Topology and Quantization of Moduli Spaces, Department of Mathematical Sciences, Aarhus University, Aarhus, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019670PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3101207PMC
September 2011

Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer.

Cancer Res 2011 Sep 16;71(17):5923-31. Epub 2011 Aug 16.

Department of Experimental Clinical Oncology, Aarhus University Hospital and Bioinformatics Research Centre, Aarhus University, Aarhus C, Denmark.

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http://cancerres.aacrjournals.org/content/early/2011/08/12/0
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http://cancerres.aacrjournals.org/cgi/doi/10.1158/0008-5472.
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http://dx.doi.org/10.1158/0008-5472.CAN-11-1182DOI Listing
September 2011

A beta-mixture model for dimensionality reduction, sample classification and analysis.

BMC Bioinformatics 2011 May 27;12:215. Epub 2011 May 27.

Bioinformatics Research Centre, Aarhus University, C.F. Møllers Allé 8, DK-8000 Århus C, Denmark.

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http://dx.doi.org/10.1186/1471-2105-12-215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3126746PMC
May 2011

A review of software for microarray genotyping.

Hum Genomics 2011 May;5(4):304-9

Bioinformatics Research Centre, Aarhus C, Denmark.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525235PMC
May 2011

Rseg--an R package to optimize segmentation of SNP array data.

Bioinformatics 2011 Feb 5;27(3):419-20. Epub 2010 Dec 5.

Department of Molecular Medicine, Aarhus University Hospital Skejby, Aarhus N, Denmark.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btq668DOI Listing
February 2011

High-resolution melting analysis for mutation screening of RGSL1, RGS16, and RGS8 in breast cancer.

Cancer Epidemiol Biomarkers Prev 2011 Feb 6;20(2):397-407. Epub 2010 Dec 6.

Institute of Human Genetics, University of Aarhus, Aarhus C, Denmark.

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http://dx.doi.org/10.1158/1055-9965.EPI-10-0514DOI Listing
February 2011

Tumor heterogeneity in neoplasms of breast, colon, and skin.

BMC Res Notes 2010 Nov 25;3:321. Epub 2010 Nov 25.

BiRC - Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus, Denmark.

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http://dx.doi.org/10.1186/1756-0500-3-321DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3002363PMC
November 2010

Incomplete and noisy network data as a percolation process.

J R Soc Interface 2010 Oct 8;7(51):1411-9. Epub 2010 Apr 8.

Centre for Bioinformatics, Division of Molecular Biosciences, Imperial College London, London SW72AZ, UK.

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http://dx.doi.org/10.1098/rsif.2010.0044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935600PMC
October 2010

Short tandem repeats and genetic variation.

Methods Mol Biol 2010 ;628:297-306

AgroTech, Institute for Agri Technology and Food Innovation, Aarhus N, Denmark.

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http://dx.doi.org/10.1007/978-1-60327-367-1_16DOI Listing
May 2010

The CATH database.

Hum Genomics 2010 Feb;4(3):207-12

Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525972PMC
February 2010

Temporal development and collapse of an Arctic plant-pollinator network.

BMC Ecol 2009 Dec 4;9:24. Epub 2009 Dec 4.

Bioinformatics Research Centre, Aarhus University, C, F, Mollers Alle 8, Building 1110, DK-8000 Aarhus C, Denmark.

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http://bmcecol.biomedcentral.com/articles/10.1186/1472-6785-
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http://dx.doi.org/10.1186/1472-6785-9-24DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800837PMC
December 2009

The genealogy, site frequency spectrum and ages of two nested mutant alleles.

Theor Popul Biol 2009 Jun 26;75(4):260-5. Epub 2009 Feb 26.

Bioinformatics Research Center, Aarhus University, Aarhus, Denmark.

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http://linkinghub.elsevier.com/retrieve/pii/S004058090900019
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http://dx.doi.org/10.1016/j.tpb.2009.02.001DOI Listing
June 2009

Model criticism based on likelihood-free inference, with an application to protein network evolution.

Proc Natl Acad Sci U S A 2009 Jun 12;106(26):10576-81. Epub 2009 Jun 12.

Department of Public Health and Epidemiology, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1073/pnas.0807882106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2695753PMC
June 2009

Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer.

BMC Cancer 2009 May 16;9:149. Epub 2009 May 16.

Department of Molecular Medicine, Aarhus University Hospital Skejby, Aarhus N, Denmark.

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http://dx.doi.org/10.1186/1471-2407-9-149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2696467PMC
May 2009

Estimation of tumor heterogeneity using CGH array data.

BMC Bioinformatics 2009 Jan 9;10:12. Epub 2009 Jan 9.

Institute of Human Genetics, University of Aarhus, Aarhus, Denmark.

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http://dx.doi.org/10.1186/1471-2105-10-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2640360PMC
January 2009

Importance sampling for the infinite sites model.

Stat Appl Genet Mol Biol 2008 30;7(1):Article32. Epub 2008 Oct 30.

Aarhus University.

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http://dx.doi.org/10.2202/1544-6115.1400DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832804PMC
December 2008

Short tandem repeats in human exons: a target for disease mutations.

BMC Genomics 2008 Sep 12;9:410. Epub 2008 Sep 12.

Bioinformatics Research Center, University of Aarhus, DK-8000 Aarhus C, Denmark.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-9-410DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2543027PMC
September 2008

Diagnostic and prognostic microRNAs in stage II colon cancer.

Cancer Res 2008 Aug;68(15):6416-24

Department of Clinical Biochemistry, Molecular Diagnostic Laboratory, Aarhus University Hospital, Aarhus N, Denmark.

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http://dx.doi.org/10.1158/0008-5472.CAN-07-6110DOI Listing
August 2008

Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells.

BMC Med Genomics 2008 Jul 22;1:31. Epub 2008 Jul 22.

Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital, Skejby, Brendstrupgaardsvej 100, DK-8200 Aarhus N, Denmark.

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http://dx.doi.org/10.1186/1755-8794-1-31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2492871PMC
July 2008

Estimating the size of the human interactome.

Proc Natl Acad Sci U S A 2008 May 12;105(19):6959-64. Epub 2008 May 12.

Division of Molecular Biosciences, Imperial College London, Wolfson Building, London SW7 2AZ, United Kingdom.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0708078105
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http://dx.doi.org/10.1073/pnas.0708078105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2383957PMC
May 2008

Ab initio identification of human microRNAs based on structure motifs.

BMC Bioinformatics 2007 Dec 18;8:478. Epub 2007 Dec 18.

Bioinformatics Research Center (BiRC), University of Aarhus, 8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1186/1471-2105-8-478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238772PMC
December 2007

Conflicting results in SNP genotype assessment.

Biotechniques 2007 Dec;43(6):756, 758, 760 passim

Danish Centre for Molecular Gerontology, Institute of Human Genetics, University of Aarhus, Denmark.

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http://dx.doi.org/10.2144/000112675DOI Listing
December 2007

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.

BMC Bioinformatics 2007 Nov 9;8:434. Epub 2007 Nov 9.

Bioinformatics Research Center, University of Aarhus, Hoegh-Guldbergsgade 10, Bldg 1090, 8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1186/1471-2105-8-434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206057PMC
November 2007

Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum.

PLoS Comput Biol 2007 Nov 9;3(11):e230. Epub 2007 Oct 9.

Department of Public Health and Epidemiology, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.0030230DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2098858PMC
November 2007

A periodic pattern of SNPs in the human genome.

Genome Res 2007 Oct 2;17(10):1414-9. Epub 2007 Aug 2.

Bioinformatics Research Center, University of Aarhus, Hoegh-Guldbergs Gade 10, DK-8000 Aarhus C, Denmark.

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http://www.genome.org/cgi/doi/10.1101/gr.6223207
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http://dx.doi.org/10.1101/gr.6223207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1987342PMC
October 2007

Evolution at the system level: the natural history of protein interaction networks.

Trends Ecol Evol 2007 Jul 1;22(7):366-73. Epub 2007 May 1.

Division of Molecular Biosciences, Imperial College London, London, UK.

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http://linkinghub.elsevier.com/retrieve/pii/S016953470700131
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http://dx.doi.org/10.1016/j.tree.2007.04.004DOI Listing
July 2007

SNPTools: a software tool for visualization and analysis of microarray data.

Bioinformatics 2007 Jun 24;23(12):1550-2. Epub 2007 Mar 24.

Bioinformatics Research Center, University of Aarhus, Høegh Guldbergs Gade 10, Aarhus C, Denmark.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btm122DOI Listing
June 2007

Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps.

J Biomed Inform 2007 Apr 20;40(2):160-73. Epub 2006 May 20.

Bioinformatics Research Center (BiRC), University of Arhus, Arhus C, Denmark.

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http://dx.doi.org/10.1016/j.jbi.2006.05.001DOI Listing
April 2007

Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis.

Nucleic Acids Res 2007 18;35(1):1-10. Epub 2006 Aug 18.

Center for Ancient Genetics, Niels Bohr Institute and Biological Institutes, The University of Copenhagen, Juliane Maries vej 30, DK-2100 Copenhagen Ø, Denmark.

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http://dx.doi.org/10.1093/nar/gkl483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1802572PMC
February 2007

Frequent occurrence of uniparental disomy in colorectal cancer.

Carcinogenesis 2007 Jan 13;28(1):38-48. Epub 2006 Jun 13.

Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital, Skejby DK-8200, Aarhus N, Denmark.

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http://dx.doi.org/10.1093/carcin/bgl086DOI Listing
January 2007

Evaluating Neanderthal genetics and phylogeny.

J Mol Evol 2007 Jan 1;64(1):50-60. Epub 2006 Dec 1.

Centré for Ancient Genetics, Niels Bohr Institute and Biological Institute, University of Copenhagen, Juliane Maries vej 30, Copenhagen DK-2100, Denmark.

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http://dx.doi.org/10.1007/s00239-006-0017-yDOI Listing
January 2007

Consistency of estimators of population scaled parameters using composite likelihood.

Authors:
Carsten Wiuf

J Math Biol 2006 Nov 8;53(5):821-41. Epub 2006 Sep 8.

Bioinformatics Research Center, University of Aarhus, Høegh-Guldbergsgade 10, Building 1090, 8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1007/s00285-006-0031-0DOI Listing
November 2006

The effects of incomplete protein interaction data on structural and evolutionary inferences.

BMC Biol 2006 Nov 3;4:39. Epub 2006 Nov 3.

Theoretical Genomics Group, Centre for Bioinformatics, Division of Molecular Biosciences, Imperial College London, London, UK.

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http://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-
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http://dx.doi.org/10.1186/1741-7007-4-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1665463PMC
November 2006

Genotyping and annotation of Affymetrix SNP arrays.

Nucleic Acids Res 2006 9;34(14):e100. Epub 2006 Aug 9.

Bioinformatics Research Center, University of Aarhus, Høegh-Guldbergsgade 10, Bldg 1090, 8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1093/nar/gkl475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557804PMC
September 2006

Convergence properties of the degree distribution of some growing network models.

Bull Math Biol 2006 Aug;68(6):1275-91

Bioinformatics Research Center, University of Aarhus, Høegh Guldbergsgade 10, Building 90, 8000 Aarhus C, Denmark.

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August 2006

A likelihood approach to analysis of network data.

Proc Natl Acad Sci U S A 2006 May 8;103(20):7566-70. Epub 2006 May 8.

Bioinformatics Research Center, University of Aarhus, Høegh-Guldbergsgade 10, Building 1090, 8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1073/pnas.0600061103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1472487PMC
May 2006

SOX4 expression in bladder carcinoma: clinical aspects and in vitro functional characterization.

Cancer Res 2006 Apr;66(7):3434-42

Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital/Skejby Sygehus, 8200 Aarhus N, Denmark.

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http://dx.doi.org/10.1158/0008-5472.CAN-05-3456DOI Listing
April 2006

Assessing the fidelity of ancient DNA sequences amplified from nuclear genes.

Genetics 2006 Feb 19;172(2):733-41. Epub 2005 Nov 19.

Ancient DNA and Evolution Group, Centre for Ancient Genetics, Niels Bohr Institute, University of Copenhagen, Denmark.

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http://dx.doi.org/10.1534/genetics.105.049718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456239PMC
February 2006

Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors.

Clin Cancer Res 2005 Nov;11(21):7709-19

Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University, Denmark.

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http://dx.doi.org/10.1158/1078-0432.CCR-05-1130DOI Listing
November 2005

Sampling properties of random graphs: the degree distribution.

Phys Rev E Stat Nonlin Soft Matter Phys 2005 Sep 19;72(3 Pt 2):036118. Epub 2005 Sep 19.

Centre for Bioinformatics, Division of Molecular Biosciences, Imperial College London, Wolfson Building, London SW7 2AZ, United Kingdom.

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https://link.aps.org/doi/10.1103/PhysRevE.72.036118
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http://dx.doi.org/10.1103/PhysRevE.72.036118DOI Listing
September 2005

Subnets of scale-free networks are not scale-free: sampling properties of networks.

Proc Natl Acad Sci U S A 2005 Mar 14;102(12):4221-4. Epub 2005 Mar 14.

Centre for Bioinformatics, Imperial College London, Wolfson Building, London SW7 2AZ, UK.

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http://dx.doi.org/10.1073/pnas.0501179102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC555505PMC
March 2005

High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors.

Cancer Res 2005 Jan;65(1):34-45

Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital, Aarhus, Denmark.

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January 2005

The probability and chromosomal extent of trans-specific polymorphism.

Genetics 2004 Dec 15;168(4):2363-72. Epub 2004 Sep 15.

Department of Statistics, University of Oxford, Oxford, OX1 3TG, United Kingdom.

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http://dx.doi.org/10.1534/genetics.104.029488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448748PMC
December 2004

Identification of endogenous retroviral reading frames in the human genome.

Retrovirology 2004 Oct 11;1:32. Epub 2004 Oct 11.

Bioinformatics Research Center, University of Aarhus, Høegh-Guldbergs Gade 10, Bldg. 090, DK-8000 Aarhus, Denmark.

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http://dx.doi.org/10.1186/1742-4690-1-32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524368PMC
October 2004

Inference on recombination and block structure using unphased data.

Authors:
Carsten Wiuf

Genetics 2004 Jan;166(1):537-45

Bioinformatics Research Center, University of Aarhus, 8000 Aarhus C, Denmark.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1470680PMC
January 2004

Some notes on the combinatorial properties of haplotype tagging.

Math Biosci 2003 Oct;185(2):205-16

Variagenics, 60 Hampshire Street, Cambridge, MA 02139, USA.

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October 2003

Diverse plant and animal genetic records from Holocene and Pleistocene sediments.

Science 2003 May 17;300(5620):791-5. Epub 2003 Apr 17.

Department of Evolutionary Biology, Zoological Institute, University of Copenhagen, Universitetsparken 15, Denmark DK-2100 Ø.

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http://dx.doi.org/10.1126/science.1084114DOI Listing
May 2003

A coalescent model of recombination hotspots.

Genetics 2003 May;164(1):407-17

Variagenics, Cambridge, Massachusetts 02139, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462539PMC
May 2003

Inferring population history from genealogical trees.

Authors:
Carsten Wiuf

J Math Biol 2003 Mar;46(3):241-64

Department of Statistics, University of Oxford, Oxford, OX1 3TG, UK.

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http://link.springer.com/10.1007/s00285-002-0180-8
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http://dx.doi.org/10.1007/s00285-002-0180-8DOI Listing
March 2003

Simulating haplotype blocks in the human genome.

Bioinformatics 2003 Jan;19(2):289-90

Variagenics Inc., 60 Hampshire St, Cambridge, MA 02139-1548, USA.

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http://dx.doi.org/10.1093/bioinformatics/19.2.289DOI Listing
January 2003

On the minimum number of topologies explaining a sample of DNA sequences.

Authors:
Carsten Wiuf

Theor Popul Biol 2002 Dec;62(4):357-63

Variagenics, 60 Hampshire Street, Cambridge, Massachusetts 02139-1548, USA.

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December 2002