Carrie D Nicora

Carrie D Nicora

UNVERIFIED PROFILE

Are you Carrie D Nicora?   Register this Author

Register author
Carrie D Nicora

Carrie D Nicora

Publications by authors named "Carrie D Nicora"

Are you Carrie D Nicora?   Register this Author

98Publications

2153Reads

22Profile Views

Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.

Environ Microbiol 2019 Dec 25. Epub 2019 Dec 25.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1462-2920.14907DOI Listing
December 2019

Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides.

Anal Chem 2019 Sep 28;91(18):11606-11613. Epub 2019 Aug 28.

Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.analchem.9b01814DOI Listing
September 2019

Insights into the histology of planarian flatworm Phagocata gracilis based on location specific, intact lipid information provided by GCIB-ToF-SIMS imaging.

Biochim Biophys Acta Mol Cell Biol Lipids 2019 05 4;1864(5):733-743. Epub 2019 Feb 4.

NESACBIO, University of Washington, Seattle, WA, United States of America; Department of Bioengineering, University of Washington, Seattle, WA, United States of America. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbalip.2019.01.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6506226PMC
May 2019

LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers.

Methods Mol Biol 2018 ;1788:145-156

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/7651_2017_93DOI Listing
February 2019

Optimization for Peptide Sample Preparation for Urine Peptidomics.

Methods Mol Biol 2018 ;1788:63-72

Department of Surgery, University of California San Francisco, San Francisco, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/7651_2017_90DOI Listing
February 2019

Rare Earth Elements Alter Redox Balance in 20Z.

Front Microbiol 2018 27;9:2735. Epub 2018 Nov 27.

Biology Department, Viral Information Institute, San Diego State University, San Diego, CA, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fmicb.2018.02735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6277846PMC
November 2018

Urinary Virome Perturbations in Kidney Transplantation.

Front Med (Lausanne) 2018 19;5:72. Epub 2018 Apr 19.

Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fmed.2018.00072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5916966PMC
April 2018

Structure Elucidation of Unknown Metabolites in Metabolomics by Combined NMR and MS/MS Prediction.

Metabolites 2018 Jan 17;8(1). Epub 2018 Jan 17.

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/metabo8010008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5875998PMC
January 2018

Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.

PLoS One 2017 2;12(3):e0173251. Epub 2017 Mar 2.

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0173251PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333879PMC
September 2017

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in .

mBio 2017 06 20;8(3). Epub 2017 Jun 20.

Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology, Göteborg, Sweden

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mBio.00857-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5478895PMC
June 2017

Unambiguous metabolite identification in high-throughput metabolomics by hybrid 1D H NMR/ESI MS approach.

Magn Reson Chem 2016 12 16;54(12):998-1003. Epub 2016 Sep 16.

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/mrc.4503DOI Listing
December 2016

An efficient method for native protein purification in the selected range from prostate cancer tissue digests.

Chin Clin Oncol 2016 Dec;5(6):78

Department of Urology, University of Washington, Seattle, WA 98195, USA; Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.21037/cco.2016.12.03DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627993PMC
December 2016

Proteome Remodeling in Response to Sulfur Limitation in " Pelagibacter ubique".

mSystems 2016 Jul-Aug;1(4). Epub 2016 Jul 12.

Department of Microbiology, Oregon State University, Corvallis, Oregon, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mSystems.00068-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069961PMC
July 2016

Mining the human urine proteome for monitoring renal transplant injury.

Kidney Int 2016 06 4;89(6):1244-52. Epub 2016 Mar 4.

The Department of Surgery, University of California San Francisco, San Francisco, California, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.kint.2015.12.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5221536PMC
June 2016

Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica.

BMC Genomics 2016 Feb 25;17:138. Epub 2016 Feb 25.

Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-016-2471-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4766638PMC
February 2016

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.

Nucleic Acids Res 2015 Apr 26;43(8):4163-78. Epub 2015 Mar 26.

Department of Biology and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA Howard Hughes Medical Institute, Indiana University, Bloomington, IN 47405, USA

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417161PMC
April 2015

Perturbations in the urinary exosome in transplant rejection.

Front Med (Lausanne) 2014 5;1:57. Epub 2015 Jan 5.

Division of Transplant Surgery, Department of Surgery, University of California San Francisco , San Francisco, CA , USA.

View Article

Download full-text PDF

Source
http://journal.frontiersin.org/article/10.3389/fmed.2014.000
Publisher Site
http://dx.doi.org/10.3389/fmed.2014.00057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4292055PMC
January 2015

Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva.

Int J Parasitol 2014 Nov 7;44(13):1029-37. Epub 2014 Aug 7.

Paul G. Allen School for Global Animal Health, Washington State University, Pullman, WA, USA; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, USA. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S00207519140017
Publisher Site
http://dx.doi.org/10.1016/j.ijpara.2014.07.003DOI Listing
November 2014

Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits.

Cell Rep 2014 Oct 2;9(1):378-390. Epub 2014 Oct 2.

Department of Biology and Department of Molecular and Cellular Biochemistry, Indiana University, 915 E. Third Street, Bloomington, IN 47405, USA; Howard Hughes Medical Institute, Indiana University, Bloomington, IN 47405, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2014.08.067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196699PMC
October 2014

The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation.

Environ Microbiol Rep 2014 Aug 27;6(4):389-95. Epub 2014 Apr 27.

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1758-2229.12163DOI Listing
August 2014

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

ISME J 2014 Jul 13;8(7):1452-63. Epub 2014 Mar 13.

1] Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA, USA [2] Pacific Northwest National Laboratory, Department of Energy, Biological Sciences Department, Richland, WA, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/ismej2013249
Publisher Site
http://dx.doi.org/10.1038/ismej.2013.249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4069391PMC
July 2014

Optimization for peptide sample preparation for urine peptidomics.

Clin Proteomics 2014 Feb 25;11(1). Epub 2014 Feb 25.

California Pacific Medical Center Research Institute, 475 Brannan St,, Ste 220, San Francisco, CA 9410, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1559-0275-11-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944950PMC
February 2014

Characterizing microbial community and geochemical dynamics at hydrothermal vents using osmotically driven continuous fluid samplers.

Environ Sci Technol 2013 May 5;47(9):4399-407. Epub 2013 Apr 5.

Harvard University, Department of Organismic and Evolutionary Biology, 16 Divinity Avenue, Cambridge, Massachusetts 02138, USA.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/es3037302
Publisher Site
http://dx.doi.org/10.1021/es3037302DOI Listing
May 2013

In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.

Mol Cell 2012 Dec 8;48(5):811-8. Epub 2012 Nov 8.

Department of Biology and Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.molcel.2012.09.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532817PMC
December 2012

Suite of activity-based probes for cellulose-degrading enzymes.

J Am Chem Soc 2012 Dec 6;134(50):20521-32. Epub 2012 Dec 6.

Biological Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Blvd, Richland, Washington 99352, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja309790wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538167PMC
December 2012

A systematic analysis of a deep mouse epididymal sperm proteome.

Biol Reprod 2012 Jun 21;87(6):141. Epub 2012 Dec 21.

School of Molecular Biosciences, Washington State University, Spokane, Washington 99201, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1095/biolreprod.112.104208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435428PMC
June 2012

Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications.

Anal Chem 2012 Mar 2;84(6):2862-7. Epub 2012 Mar 2.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/ac203394r
Publisher Site
http://dx.doi.org/10.1021/ac203394rDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310275PMC
March 2012

Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light.

J Proteome Res 2012 Feb 1;11(2):609-19. Epub 2011 Dec 1.

Pacific Northwest National Laboratory , Richland, Washington 99352, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr200959xDOI Listing
February 2012

Trypsin-catalyzed oxygen-18 labeling for quantitative proteomics.

Methods Mol Biol 2011 ;753:43-54

Biological Sciences Division, Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-148-2_3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6752951PMC
September 2011

Proteome analysis of Borrelia burgdorferi response to environmental change.

PLoS One 2010 Nov 2;5(11):e13800. Epub 2010 Nov 2.

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0013800PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2970547PMC
November 2010

Proteomic detection of non-annotated protein-coding genes in Pseudomonas fluorescens Pf0-1.

PLoS One 2009 Dec 24;4(12):e8455. Epub 2009 Dec 24.

Center for Adaptation Genetics and Drug Resistance and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008455PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2794547PMC
December 2009

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

ISME J 2009 Jan 4;3(1):93-105. Epub 2008 Sep 4.

Molecular and Cellular Biology Program, Oregon State University, Corvallis, OR 97331, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ismej.2008.83DOI Listing
January 2009

Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique".

Appl Environ Microbiol 2008 Jul 9;74(13):4091-100. Epub 2008 May 9.

Department of Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.00599-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2446508PMC
July 2008

Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes.

J Microbiol Methods 2006 Dec 7;67(3):424-36. Epub 2006 Jul 7.

Biological Separations and Mass Spectrometry, Mail Stop, K8-98, Pacific Northwest National Laboratory, Richland, WA 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mimet.2006.04.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2794424PMC
December 2006

Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.

J Proteome Res 2006 May;5(5):1252-60

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/abs/10.1021/pr060028v
Publisher Site
http://dx.doi.org/10.1021/pr060028vDOI Listing
May 2006