Publications by authors named "Cankun Wang"

13Publications

Deep forest ensemble learning for classification of alignments of non-coding RNA sequences based on multi-view structure representations.

Authors:
Ying Li Qi Zhang Zhaoqian Liu Cankun Wang Siyu Han Qin Ma Wei Du

Brief Bioinform 2020 Dec 23. Epub 2020 Dec 23.

College of Computer Science and Technology, Jilin University, Changchun, China.

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December 2020

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease.

Authors:
Jing Jiang Cankun Wang Ren Qi Hongjun Fu Qin Ma

iScience 2020 Nov 5;23(11):101769. Epub 2020 Nov 5.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.

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November 2020

IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.

Authors:
Anjun Ma Cankun Wang Yuzhou Chang Faith H Brennan Adam McDermaid Bingqiang Liu Chi Zhang Phillip G Popovich Qin Ma

Nucleic Acids Res 2020 07;48(W1):W275-W286

Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.

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July 2020

CirRNAPL: A web server for the identification of circRNA based on extreme learning machine.

Authors:
Mengting Niu Jun Zhang Yanjuan Li Cankun Wang Zhaoqian Liu Hui Ding Quan Zou Qin Ma

Comput Struct Biotechnol J 2020 2;18:834-842. Epub 2020 Apr 2.

Department of Biomedical Informatics, Ohio State University, Columbus, OH, USA.

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April 2020

Water Deficit Transcriptomic Responses Differ in the Invasive and Established in the Southern and Northern United States.

Authors:
Padmapriya Swaminathan Michelle Ohrtman Abigail Carinder Anup Deuja Cankun Wang John Gaskin Anne Fennell Sharon Clay

Plants (Basel) 2020 Jan 9;9(1). Epub 2020 Jan 9.

Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD 57007, USA.

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January 2020

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.

Authors:
Juan Xie Anjun Ma Yu Zhang Bingqiang Liu Sha Cao Cankun Wang Jennifer Xu Chi Zhang Qin Ma

Bioinformatics 2020 02;36(4):1143-1149

Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.

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February 2020

Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework.

Authors:
Jinyu Yang Anjun Ma Adam D Hoppe Cankun Wang Yang Li Chi Zhang Yan Wang Bingqiang Liu Qin Ma

Nucleic Acids Res 2019 09;47(15):7809-7824

Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.

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September 2019

Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity.

Authors:
Ye Xia Seth DeBolt Qin Ma Adam McDermaid Cankun Wang Nicole Shapiro Tanja Woyke Nikos C Kyrpides

Microbiol Resour Announc 2019 Apr 11;8(15). Epub 2019 Apr 11.

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

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April 2019

Improved Draft Genome Sequence of sp. Strain YF23, Which Has Plant Growth-Promoting Activity.

Authors:
Ye Xia Seth DeBolt Qin Ma Adam McDermaid Cankun Wang Nicole Shapiro Tanja Woyke Nikos C Kyrpides

Microbiol Resour Announc 2019 Apr 11;8(15). Epub 2019 Apr 11.

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

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April 2019

Using Machine Learning to Measure Relatedness Between Genes: A Multi-Features Model.

Authors:
Yan Wang Sen Yang Jing Zhao Wei Du Yanchun Liang Cankun Wang Fengfeng Zhou Yuan Tian Qin Ma

Sci Rep 2019 03 12;9(1):4192. Epub 2019 Mar 12.

Bioinformatics and Mathematical Biosciences Lab, Department of Agronomy, Horticulture, and Plant Science, Department of Mathematics and Statistics, South Dakota State University, Brookings, SD, 57006, USA.

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March 2019

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.

Authors:
Brandon Monier Adam McDermaid Cankun Wang Jing Zhao Allison Miller Anne Fennell Qin Ma

PLoS Comput Biol 2019 02 14;15(2):e1006792. Epub 2019 Feb 14.

Department of Agronomy, Horticulture, and Plant Science, BioSNTR, South Dakota State University, Brookings, SD, United States of America.

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February 2019

A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation.

Authors:
Adam McDermaid Xin Chen Yiran Zhang Cankun Wang Shaopeng Gu Juan Xie Qin Ma

Front Genet 2018 14;9:313. Epub 2018 Aug 14.

Bioinformatics and Mathematical Biosciences Lab, Department of Agronomy, Horticulture, and Plant Science, South Dakota State University, Brookings, SD, United States.

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August 2018

LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property.

Authors:
Siyu Han Yanchun Liang Qin Ma Yangyi Xu Yu Zhang Wei Du Cankun Wang Ying Li

Brief Bioinform 2019 11;20(6):2009-2027

College of Computer Science and Technology, Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China.

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November 2019