Publications by authors named "Byron Wallace"

37Publications

Trialstreamer: A living, automatically updated database of clinical trial reports.

J Am Med Inform Assoc 2020 Sep 17. Epub 2020 Sep 17.

Khoury College of Computer Sciences, Northeastern University, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1093/jamia/ocaa163DOI Listing
September 2020

Semi-Automated evidence synthesis in health psychology: current methods and future prospects.

Health Psychol Rev 2020 03 29;14(1):145-158. Epub 2020 Jan 29.

Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA.

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http://dx.doi.org/10.1080/17437199.2020.1716198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7029797PMC
March 2020

Toward systematic review automation: a practical guide to using machine learning tools in research synthesis.

Syst Rev 2019 07 11;8(1):163. Epub 2019 Jul 11.

Khoury College of Computer Sciences, Northeastern University, 202 WVH, 360 Huntington Avenue, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13643-019-1074-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6621996PMC
July 2019

Learning to Identify Patients at Risk of Uncontrolled Hypertension Using Electronic Health Records Data.

AMIA Jt Summits Transl Sci Proc 2019 6;2019:533-542. Epub 2019 May 6.

Northeastern University, Boston, MA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6568059PMC
May 2019

Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study.

BMC Med Inform Decis Mak 2019 05 8;19(1):96. Epub 2019 May 8.

School of Population Health & Environmental Sciences, Faculty of Life Sciences and Medicine, King's College London, 3rd Floor, Addison House, Guy's Campus, London, SE1 1UL, UK.

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http://dx.doi.org/10.1186/s12911-019-0814-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505190PMC
May 2019

Perceptions of cervical cancer prevention on Twitter uncovered by different sampling strategies.

PLoS One 2019 11;14(2):e0211931. Epub 2019 Feb 11.

UCSF Center for Vulnerable Populations, Division of General Internal Medicine, Department of Medicine, UCSF, San Francisco, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0211931PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6370210PMC
November 2019

Rapid reviews may produce different results to systematic reviews: a meta-epidemiological study.

J Clin Epidemiol 2019 05 25;109:30-41. Epub 2018 Dec 25.

UCL Institute of Education, University College London, London, UK.

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http://dx.doi.org/10.1016/j.jclinepi.2018.12.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6524137PMC
May 2019

Syntactic Patterns Improve Information Extraction for Medical Search.

Proc Conf 2018 Jun;2018(Short Paper):371-377

College of Computer and Information Science, Northeastern University.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6174535PMC
June 2018

Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness.

Stud Health Technol Inform 2017 ;245:657-661

The University of Texas School of Biomedical Informatics at Houston, Houston, Texas, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464117PMC
June 2018

Aggregating and Predicting Sequence Labels from Crowd Annotations.

Proc Conf Assoc Comput Linguist Meet 2017 ;2017:299-309

University of Texas at Austin.

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http://dx.doi.org/10.18653/v1/P17-1028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662012PMC
January 2017

Automating Biomedical Evidence Synthesis: RobotReviewer.

Proc Conf Assoc Comput Linguist Meet 2017 Jul;2017:7-12

College of Computer and Information Science, Northeastern University.

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http://dx.doi.org/10.18653/v1/P17-4002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662138PMC
July 2017

Living systematic reviews: 2. Combining human and machine effort.

J Clin Epidemiol 2017 Nov 11;91:31-37. Epub 2017 Sep 11.

Cochrane Australia, School of Public Health and Preventive Medicine, Monash University, 99 Commercial Road, Melbourne VIC 3004, Australia; Department of Infectious Diseases, Monash University and Alfred Hospital, 55 Commercial Rd, Melbourne VIC 3004, Australia.

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http://dx.doi.org/10.1016/j.jclinepi.2017.08.011DOI Listing
November 2017

PheKnow-Cloud: A Tool for Evaluating High-Throughput Phenotype Candidates using Online Medical Literature.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:149-157. Epub 2017 Jul 26.

The University of Texas at Austin, Austin, TX.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543339PMC
July 2017

An exploration of crowdsourcing citation screening for systematic reviews.

Res Synth Methods 2017 Sep 4;8(3):366-386. Epub 2017 Jul 4.

College of Computer and Information Science, Northeastern University, Boston, MA, USA.

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http://dx.doi.org/10.1002/jrsm.1252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5589498PMC
September 2017

Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach.

J Am Med Inform Assoc 2017 Nov;24(6):1165-1168

EPPI-Centre, Department of Social Science, University College London, London, UK.

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http://dx.doi.org/10.1093/jamia/ocx053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975623PMC
November 2017

Erratum to: Methods for evaluating medical tests and biomarkers.

Authors:
Gowri Gopalakrishna Miranda Langendam Rob Scholten Patrick Bossuyt Mariska Leeflang Anna Noel-Storr James Thomas Iain Marshall Byron Wallace Penny Whiting Clare Davenport Mariska Leeflang Gowri GopalaKrishna Isabel de Salis Sue Mallett Robert Wolff Penny Whiting Richard Riley Marie Westwood Jos Kleinen Gary Collins Hans Reitsma Karel Moons Antonia Zapf Annika Hoyer Katharina Kramer Oliver Kuss J Ensor J J Deeks E C Martin R D Riley Gerta Rücker Susanne Steinhauser Martin Schumacher Richard Riley Joie Ensor Kym Snell Brian Willis Thomas Debray Karel Moons Jon Deeks Gary Collins Lavinia Ferrante di Ruffano Brian Willis Clare Davenport Sue Mallett Sian Taylor-Phillips Chris Hyde Jon Deeks Sue Mallett Stuart A Taylor Gauraang Batnagar Sian Taylor-Phillips Lavinia Ferrante Di Ruffano Farah Seedat Aileen Clarke Jon Deeks Sarah Byron Frances Nixon Rebecca Albrow Thomas Walker Carla Deakin Chris Hyde Zhivko Zhelev Harriet Hunt Lavinia Ferrante di Ruffano Yaling Yang Lucy Abel James Buchanan Thomas Fanshawe Bethany Shinkins Laure Wynants Jan Verbakel Sabine Van Huffel Dirk Timmerman Ben Van Calster Mariska Leeflang Aeliko Zwinderman Patrick Bossuyt Jason Oke Jack O'Sullivan Rafael Perera Brian Nicholson Hannah L Bromley Tracy E Roberts Adele Francis Denniis Petrie G Bruce Mann Kinga Malottki Holly Smith Jon Deeks Lucinda Billingham Alice Sitch Sue Mallett Jon Deeks Oke Gerke Mie Holm-Vilstrup Eivind Antonsen Segtnan Ulrich Halekoh Poul Flemming Høilund-Carlsen Bernard G Francq Jon Deeks Alice Sitch Jac Dinnes Julie Parkes Walter Gregory Jenny Hewison Doug Altman William Rosenberg Peter Selby Julien Asselineau Paul Perez Aïssatou Paye Emilie Bessede Cécile Proust-Lima Christiana Naaktgeboren Joris de Groot Anne Rutjes Patrick Bossuyt Johannes Reitsma Karel Moons Gary Collins Emmanuel Ogundimu Jonathan Cook Yannick Le Manach Doug Altman Laure Wynants Yvonne Vergouwe Sabine Van Huffel Dirk Timmerman Ben Van Calster Romin Pajouheshnia Rolf Groenwold Karen Moons Johannes Reitsma Linda Peelen Ben Van Calster Daan Nieboer Yvonne Vergouwe Bavo De Cock Micael J Pencina Ewout W Steyerberg Jennifer Cooper Sian Taylor-Phillips Nick Parsons Chris Stinton Steve Smith Andy Dickens Rachel Jordan Alexandra Enocson David Fitzmaurice Alice Sitch Peymane Adab Bernard G Francq Charles Boachie Gaj Vidmar Karoline Freeman Martin Connock Sian Taylor-Phillips Rachel Court Aileen Clarke Joris de Groot Christiana Naaktgeboren Hans Reitsma Carl Moons Jessica Harris Andrew Mumford Zoe Plummer Kurtis Lee Barnaby Reeves Chris Rogers Veerle Verheyden Gianni D Angelini Gavin J Murphy Jeremy Huddy Melody Ni Katherine Good Graham Cooke Patrick Bossuyt George Hanna Jie Ma Doug Altman Gary Collins K G M Carl Moons Joris A H de Groot Sue Mallett Doug G Altman Johannes B Reitsma Gary S Collins Karel G M Moons Douglas G Altman Johannes B Reitsma Gary S Collins Adina Najwa Kamarudin Ruwanthi Kolamunnage-Dona Trevor Cox Melody Ni Jeremy Huddy Simone Borsci George Hanna Teresa Pérez M Carmen Pardo Angel Candela-Toha Alfonso Muriel Javier Zamora Sabina Sanghera Syed Mohiuddin Richard Martin Jenny Donovan Joanna Coast Mikyung Kelly Seo John Cairns Elizabeth Mitchell Alison Smith Judy Wright Peter Hall Michael Messenger Nicola Calder Nyantara Wickramasekera Karen Vinall-Collier Andrew Lewington Romin Pajouheshnia Johanna Damen Rolf Groenwold Karel Moons Linda Peelen Michael Messenger David Cairns Alison Smith Michelle Hutchinson Judy Wright Peter Hall Nicola Calder Cathie Sturgeon Liz Mitchel Rebecca Kift Sofia Christakoudi Manohursingh Rungall Paula Mobillo Rosa Montero Tjir-Li Tsui Sui Phin Kon Beatriz Tucker Steven Sacks Chris Farmer Terry Strom Paramit Chowdhury Irene Rebollo-Mesa Maria Hernandez-Fuentes Johanna A A G Damen Thomas P A Debray Pauline Heus Lotty Hooft Karel G M Moons Romin Pajouheshnia Johannes B Reitsma Rob J P M Scholten Johanna A A G Damen Lotty Hooft Ewoud Schuit Thomas P A Debray Gary S Collins Ioanna Tzoulaki Camille M Lassale George C M Siontis Virginia Chiocchia Corran Roberts Michael Maia Schlüssel Stephen Gerry James A Black Pauline Heus Yvonne T van der Schouw Linda M Peelen Karel G M Moons Johanna A A G Damen Thomas P A Debray Pauline Heus Lotty Hooft Karel G M Moons Romin Pajouheshnia Johannes B Reitsma Rob J P M Scholten Jie Ma Doug Altman Gary Collins Graeme Spence David McCartney Ann van den Bruel Daniel Lasserson Gail Hayward Werner Vach Antoinette de Jong Coreline Burggraaff Otto Hoekstra Josée Zijlstra Henrica de Vet Harriet Hunt Chris Hyde Sara Graziadio Joy Allen Louise Johnston Rachel O'Leary Michael Power Joy Allen Sara Graziadio Louise Johnson Rachel O'Leary Michael Power Ray Waters John Simpson Louise Johnston Joy Allen Sara Graziadio Rachel O'Leary Ray Waters Michael Power Sue Mallett Thomas R Fanshawe Peter Phillips Andrew Plumb Emma Helbren Steve Halligan Stuart A Taylor Alastair Gale Sue Mallett Peggy Sekula Douglas G Altman Willi Sauerbrei Sue Mallett Thomas R Fanshawe Julia R Forman Susan J Dutton Yemisi Takwoingi Elizabeth M Hensor Thomas E Nichols Bethany Shinkins Yaling Yang Lucy Abel Lavinia Ferrante Di Ruffano Thomas Fanshawe Emmanuelle Kempf Raphael Porcher Jennifer de Beyer Karel Moons Douglas Altman Hans Reitsma Sally Hopewell Willi Sauerbrei Gary Collins John Dennis Beverley Shields Angus Jones William Henley Ewan Pearson Andrew Hattersley Pauline Heus Johanna A A G Damen Romin Pajouheshnia Rob J P M Scholten Johannes B Reitsma Gary S Collins Douglas G Altman Karel G M Moons Lotty Hooft Beverley Shields John Dennis Angus Jones William Henley Ewan Pearson Andrew Hattersley Fueloep Scheibler Anne Rummer Sibylle Sturtz Robert Großelfinger Katie Banister Craig Ramsay Augusto Azuara-Blanco Jonathan Cook Charles Boachie Jennifer Burr Manjula Kumarasamy Rupert Bourne Ijeoma Uchegbu Simone Borsci Jennifer Murphy George Hanna Ijeoma Uchegbu Alex Carter Jen Murphy Melody Ni Joachim Marti Julie Eatock Ijeoma Uchegbu Julie Robotham Maria Dudareva Mark Gilchrist Alison Holmes Ijeoma Uchegbu Simone Borsci Phillip Monaghan Sarah Lord Andrew StJohn Sverre Sandberg Christa Cobbaert Lieselotte Lennartz Wilma Verhagen-Kamerbeek Christoph Ebert Patrick Bossuyt Andrea Horvath Kevin Jenniskens Christiana Naaktgeboren Johannes Reitsma Karel Moons Joris de Groot Chris Hyde Jaime Peters Bogdan Grigore Jaime Peters Chris Hyde Chris Hyde Obi Ukoumunne Jaime Peters Zhivko Zhelev Brooke Levis Andrea Benedetti Alexander W Levis John P A Ioannidis Ian Shrier Pim Cuijpers Simon Gilbody Lorie A Kloda Dean McMillan Scott B Patten Russell J Steele Roy C Ziegelstein Charles H Bombardier Flavia de Lima Osório Jesse R Fann Dwenda Gjerdingen Femke Lamers Manote Lotrakul Sonia R Loureiro Bernd Löwe Juwita Shaaban Lesley Stafford Henk C P M van Weert Mary A Whooley Linda S Williams Karin A Wittkampf Albert S Yeung Brett D Thombs Jaime Peters Chris Cooper James Buchanan Tom Nieto Claire Smith Olga Tucker Janine Dretzke Andrew Beggs Nirmala Rai Clare Davenport Sue Bayliss Simon Stevens Kym Snell Sue Mallet Jon Deeks Sudha Sundar Emma Hall Nuria Porta David Lorente Estelles Johann de Bono

Diagn Progn Res 2017 30;1:11. Epub 2017 Mar 30.

278The Institute of Cancer Research, London, UK.

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http://dx.doi.org/10.1186/s41512-017-0011-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460744PMC
March 2017

Rationale-Augmented Convolutional Neural Networks for Text Classification.

Proc Conf Empir Methods Nat Lang Process 2016 Nov;2016:795-804

College of Computer and Information Science, Northeastern University.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5300751PMC
http://dx.doi.org/10.18653/v1/d16-1076DOI Listing
November 2016

Extracting PICO Sentences from Clinical Trial Reports using .

J Mach Learn Res 2016 ;17

Department of Primary Care & Public Health Sciences, Faculty of Life Sciences & Medicine, King's College London, London, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065023PMC
January 2016

Characterizing the (Perceived) Newsworthiness of Health Science Articles: A Data-Driven Approach.

JMIR Med Inform 2016 Sep 22;4(3):e27. Epub 2016 Sep 22.

Department of Computer Science, University of Texas at Austin, Austin, TX, United States.

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http://dx.doi.org/10.2196/medinform.5353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054236PMC
September 2016

Improving the utility of MeSH® terms using the TopicalMeSH representation.

J Biomed Inform 2016 06 19;61:77-86. Epub 2016 Mar 19.

School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2016.03.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4893983PMC
June 2016

RobotReviewer: evaluation of a system for automatically assessing bias in clinical trials.

J Am Med Inform Assoc 2016 Jan 22;23(1):193-201. Epub 2015 Jun 22.

School of Information, University of Texas at Austin, Austin, Texas, USA.

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http://dx.doi.org/10.1093/jamia/ocv044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713900PMC
January 2016

Automating risk of bias assessment for clinical trials.

IEEE J Biomed Health Inform 2015 Jul 8;19(4):1406-12. Epub 2015 May 8.

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http://dx.doi.org/10.1109/JBHI.2015.2431314DOI Listing
July 2015

A large-scale quantitative analysis of latent factors and sentiment in online doctor reviews.

J Am Med Inform Assoc 2014 Nov-Dec;21(6):1098-103. Epub 2014 Jun 10.

Johns Hopkins University, Human Language Technology Center of Excellence, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1136/amiajnl-2014-002711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4215053PMC
May 2015

Automatically annotating topics in transcripts of patient-provider interactions via machine learning.

Med Decis Making 2014 05 27;34(4):503-12. Epub 2013 Nov 27.

Department of Health Services, Policy and Practice, Brown University, School of Public Health, Providence, RI (BCW, MBL, IBW, TAT).

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http://dx.doi.org/10.1177/0272989X13514777DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3991772PMC
May 2014

Modernizing the systematic review process to inform comparative effectiveness: tools and methods.

J Comp Eff Res 2013 May;2(3):273-82

Center for Evidence-Based Medicine, Program in Public Health, Brown University, Providence, RI 02906, USA.

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http://dx.doi.org/10.2217/cer.13.17DOI Listing
May 2013

Single cell time-resolved quorum responses reveal dependence on cell density and configuration.

J Biol Chem 2011 Jun 28;286(24):21623-32. Epub 2011 Apr 28.

Department of Chemistry, Tufts University, Medford, Massachusetts 02155, USA.

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http://dx.doi.org/10.1074/jbc.M111.239897DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122220PMC
June 2011

Semi-automated screening of biomedical citations for systematic reviews.

BMC Bioinformatics 2010 Jan 26;11:55. Epub 2010 Jan 26.

Department of Computer Science, Tufts University, Medford, MA, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/1471-2105-11-55DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2824679PMC
January 2010

Meta-Analyst: software for meta-analysis of binary, continuous and diagnostic data.

BMC Med Res Methodol 2009 Dec 4;9:80. Epub 2009 Dec 4.

Center for Clinical Evidence Synthesis, Institute for Clinical Research and Health Policy Studies, Tufts Medical Center, Boston, MA 02111, USA.

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http://dx.doi.org/10.1186/1471-2288-9-80DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795760PMC
December 2009