Publications by authors named "Burak H Alver"

15Publications

GiniQC: a measure for quantifying noise in single-cell Hi-C data.

Bioinformatics 2020 05;36(9):2902-2904

Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1093/bioinformatics/btaa048DOI Listing
May 2020

Tibanna: software for scalable execution of portable pipelines on the cloud.

Bioinformatics 2019 11;35(21):4424-4426

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6931271PMC
November 2019

Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation.

Mol Cell 2017 Apr 30;66(1):77-88.e5. Epub 2017 Mar 30.

Department of Genetics, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.02.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394798PMC
April 2017

The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers.

Nat Commun 2017 03 6;8:14648. Epub 2017 Mar 6.

Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/ncomms14648DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343482PMC
March 2017

ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.

Nat Genet 2017 Feb 12;49(2):296-302. Epub 2016 Dec 12.

Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.3744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5285448PMC
February 2017

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.

Nat Commun 2016 05 6;7:11485. Epub 2016 May 6.

Department of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.

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http://dx.doi.org/10.1038/ncomms11485DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4859066PMC
May 2016

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014

Comparative analysis of the transcriptome across distant species.

Nature 2014 Aug;512(7515):445-8

1] Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA [2].

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http://dx.doi.org/10.1038/nature13424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155737PMC
August 2014

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming.

Nat Commun 2014 Aug 27;5:4719. Epub 2014 Aug 27.

1] Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA [2] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/ncomms5719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4217530PMC
August 2014