Bum-Kyu Lee

Bum-Kyu Lee

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Bum-Kyu Lee

Bum-Kyu Lee

Publications by authors named "Bum-Kyu Lee"

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36Publications

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Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells.

Nat Commun 2019 10 18;10(1):4749. Epub 2019 Oct 18.

Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA.

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http://dx.doi.org/10.1038/s41467-019-12720-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802173PMC
October 2019

Implications of CpG islands on chromosomal architectures and modes of global gene regulation.

Nucleic Acids Res 2018 05;46(9):4382-4391

Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USA.

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http://dx.doi.org/10.1093/nar/gky147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961348PMC
May 2018

Fosl1 overexpression directly activates trophoblast-specific gene expression programs in embryonic stem cells.

Stem Cell Res 2018 01 13;26:95-102. Epub 2017 Dec 13.

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX 78712, United States. Electronic address:

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http://dx.doi.org/10.1016/j.scr.2017.12.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5899959PMC
January 2018

Arid3a regulates mesoderm differentiation in mouse embryonic stem cells.

J Stem Cell Ther Transplant 2017 7;1(1):52-62. Epub 2017 Sep 7.

Department of Molecular Biosciences, USA.

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http://dx.doi.org/10.29328/journal.jsctt.1001005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6510499PMC
September 2017

Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells.

Nucleic Acids Res 2017 Sep;45(17):10103-10114

Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.

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http://dx.doi.org/10.1093/nar/gkx692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737334PMC
September 2017

Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiquitination.

Nucleic Acids Res 2017 Jul;45(12):7151-7166

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX 78712, USA.

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http://dx.doi.org/10.1093/nar/gkx310DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499583PMC
July 2017

Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis.

Mol Plant Microbe Interact 2016 09 26;29(9):674-687. Epub 2016 Sep 26.

1 Department of Biology, Texas State University, San Marcos, TX, U.S.A.

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http://dx.doi.org/10.1094/MPMI-01-16-0023-RDOI Listing
September 2016

Yap1 is dispensable for self-renewal but required for proper differentiation of mouse embryonic stem (ES) cells.

EMBO Rep 2016 04 25;17(4):519-29. Epub 2016 Feb 25.

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA

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http://dx.doi.org/10.15252/embr.201540933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4818770PMC
April 2016

Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1.

Proc Natl Acad Sci U S A 2016 Feb 19;113(5):E577-86. Epub 2016 Jan 19.

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712;

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http://dx.doi.org/10.1073/pnas.1524677113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747717PMC
February 2016

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.

PLoS One 2014 8;9(9):e107156. Epub 2014 Sep 8.

Department of Pathology, The Pediatric Brain Tumor Foundation Institute, and The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0107156PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157845PMC
January 2016

Tgif1 Counterbalances the Activity of Core Pluripotency Factors in Mouse Embryonic Stem Cells.

Cell Rep 2015 Oct 24;13(1):52-60. Epub 2015 Sep 24.

Department of Molecular Biosciences, the University of Texas at Austin, Austin, TX 78712, USA; Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, the University of Texas at Austin, Austin, TX 78712, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.08.067DOI Listing
October 2015

Multi-layered global gene regulation in mouse embryonic stem cells.

Cell Mol Life Sci 2015 Jan 17;72(2):199-216. Epub 2014 Sep 17.

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, 78712, USA.

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http://dx.doi.org/10.1007/s00018-014-1734-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284393PMC
January 2015

CpG island-mediated global gene regulatory modes in mouse embryonic stem cells.

Nat Commun 2014 Nov 18;5:5490. Epub 2014 Nov 18.

1] Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, USA [2] Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712, USA [3] Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas 78712, USA.

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http://dx.doi.org/10.1038/ncomms6490DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236720PMC
November 2014

Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

PLoS Genet 2014 Nov 20;10(11):e1004798. Epub 2014 Nov 20.

The European Molecular Biology Laboratory, The European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1004798DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4238955PMC
November 2014

Arid3a is essential to execution of the first cell fate decision via direct embryonic and extraembryonic transcriptional regulation.

Genes Dev 2014 Oct;28(20):2219-32

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas 78712, USA

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http://dx.doi.org/10.1101/gad.247163.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201284PMC
October 2014

Dendritic cell fate is determined by BCL11A.

Proc Natl Acad Sci U S A 2014 Mar 3;111(11):E998-1006. Epub 2014 Mar 3.

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712.

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http://dx.doi.org/10.1073/pnas.1319228111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964079PMC
March 2014

Bcl6a function is required during optic cup formation to prevent p53-dependent apoptosis and colobomata.

Hum Mol Genet 2013 Sep 12;22(17):3568-82. Epub 2013 May 12.

Section of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.

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http://dx.doi.org/10.1093/hmg/ddt211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3736873PMC
September 2013

Development of a chloroplast DNA marker for monitoring of transgene introgression in Brassica napus L.

Biotechnol Lett 2013 Sep 21;35(9):1533-9. Epub 2013 May 21.

Biosafety Division, National Academy of Agricultural Science, Rural Development Administration, Suwon, 441-707, South Korea.

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http://dx.doi.org/10.1007/s10529-013-1236-0DOI Listing
September 2013

The BCL11A transcription factor directly activates RAG gene expression and V(D)J recombination.

Mol Cell Biol 2013 May 25;33(9):1768-81. Epub 2013 Feb 25.

Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, USA.

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http://dx.doi.org/10.1128/MCB.00987-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624176PMC
May 2013

A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes.

Nucleic Acids Res 2013 Feb 8;41(4):2239-54. Epub 2013 Jan 8.

Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, and Section of Molecular Genetics and Microbiology, University of Texas at Austin, 1 University Station A4800, Austin, Texas 78712-0159, USA.

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http://dx.doi.org/10.1093/nar/gks1452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3575845PMC
February 2013

Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation.

J Biol Chem 2012 Sep 5;287(37):30906-13. Epub 2012 Sep 5.

Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Section of Molecular Genetics and Microbiology, University of Texas, Austin, Texas 78712, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.R111.324962
Publisher Site
http://dx.doi.org/10.1074/jbc.R111.324962DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3438923PMC
September 2012

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.

Genome Res 2012 Jan 16;22(1):9-24. Epub 2011 Nov 16.

Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Section of Molecular Genetics and Microbiology, University of Texas at Austin, Austin, Texas 78712, USA.

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http://dx.doi.org/10.1101/gr.127597.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246210PMC
January 2012

Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis.

Nucleic Acids Res 2011 May 18;39(9):3558-73. Epub 2011 Jan 18.

Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Section of Molecular Genetics and Microbiology, University of Texas at Austin, Austin, TX 78712, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkq1313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089461PMC
May 2011

Heritable individual-specific and allele-specific chromatin signatures in humans.

Science 2010 Apr 18;328(5975):235-9. Epub 2010 Mar 18.

Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Section of Molecular Genetics and Microbiology, University of Texas, Austin, TX 78712, USA.

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http://dx.doi.org/10.1126/science.1184655DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929018PMC
April 2010