Publications by authors named "Brooke Rhead"

25Publications

Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology.

Nat Commun 2019 07 31;10(1):3417. Epub 2019 Jul 31.

Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, 90095, USA.

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http://dx.doi.org/10.1038/s41467-019-11052-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6668473PMC
July 2019

Evidence for a causal relationship between low vitamin D, high BMI, and pediatric-onset MS.

Neurology 2017 Apr 29;88(17):1623-1629. Epub 2017 Mar 29.

From the Division of Epidemiology, School of Public Health (M.A.G., X.S., E.X., H.Q., D.Q., C.M., L.F.B.), and Computational Biology Graduate Group (B.R.), University of California, Berkeley; Department of Clinical Neuroscience and Center for Molecular Medicine (P.S.), Karolinska Institutet at Karolinska University Hospital, Stockholm, Sweden; Department of Neurology (J.S.G., E.W.) and Regional Pediatric MS Center, Neurology (J.H., S.C.), University of California, San Francisco; Partners Pediatric Multiple Sclerosis Center (T.C.), Massachusetts General Hospital for Children, Boston; Division of Neurology (A.W.), Children's Hospital of Philadelphia, PA; Blue Bird Circle Multiple Sclerosis Center (T.L.), Baylor College of Medicine, Houston, TX; Children's Hospital Colorado (T.S.), University of Colorado, Denver; Lourie Center for Pediatric Multiple Sclerosis (A.B., L.K.), Stony Brook Children's Hospital, NY; Department of Neurology (B.G.), University of Texas Southwestern, Dallas; Pediatric Multiple Sclerosis Center (B.W.-G.), Jacobs Neurological Institute, SUNY Buffalo, NY; Pediatric MS Center at Loma Linda University Children's Hospital (G.A.), CA; Mayo Clinic's Pediatric Multiple Sclerosis Center (J.M.T., M.R.), Rochester, MN; University of Alabama Center for Pediatric-onset Demyelinating Disease (J.N., Y.H.), Children's Hospital of Alabama, Birmingham; Department of Pediatric Neurology (J.R.), Northwestern Feinberg School of Medicine, Chicago, IL; Primary Children's Hospital (M.C.), University of Utah, Salt Lake City; Boston Children's Hospital (M.G., L.B.), MA; Pediatric-onset Demyelinating Diseases and Autoimmune Encephalitis Center (S.M.), St. Louis Children's Hospital, Washington University School of Medicine, MO; Children's National Medical Center (I.K.), Washington, DC; Departments of Neurology (J.R.) and Pediatrics (S.R., T.C.C.), University of Utah School of Medicine, Salt Lake City; Kaiser Permanente Division of Research (L.S., C.S., L.F.B.), Oakland, CA; Institute of Environmental Medicine (J.H., M.B., A.H., T.O., I.K., L.A.), Karolinska Institutet; Centre for Occupational and Environmental Medicine (L.A.), Stockholm County Council, Stockholm, Sweden; and Research Program on Genes, Environment and Health (C.S.), Kaiser Permanente, Oakland, CA.

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http://dx.doi.org/10.1212/WNL.0000000000003849DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405763PMC
April 2017

Mendelian randomization shows a causal effect of low vitamin D on multiple sclerosis risk.

Neurol Genet 2016 Oct 13;2(5):e97. Epub 2016 Sep 13.

Computational Biology Graduate Group (B.R.), Division of Epidemiology (M.G., A.M., X.S., H.Q., L.F.B.), School of Public Health, University of California, Berkeley; Institute of Environmental Medicine (M.B., A.K.H., L.A.), Karolinska Institutet, Stockholm, Sweden; Kaiser Permanente Division of Research (L.S., C.S., L.F.B.), Research Program on Genes, Environment, and Health (C.S.), Kaiser Permanente, Oakland, CA; Department of Clinical Neuroscience and Center for Molecular Medicine (J.L., A.G., T.O., J.H., I.K.), Karolinska Institutet at Karolinska University Hospital, Stockholm, Sweden; Department of Epidemiology and Biostatistics (M.M.G.), University of California, San Francisco; and Centre for Occupational and Environmental Medicine (L.A.), Stockholm County Council, Sweden.

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http://dx.doi.org/10.1212/NXG.0000000000000097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022843PMC
October 2016

The UCSC Genome Browser database: 2014 update.

Nucleic Acids Res 2014 Jan 21;42(Database issue):D764-70. Epub 2013 Nov 21.

Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), 1156 High Street, Santa Cruz, CA 95064, USA, Computational Biology Graduate Group, University of California Berkeley, Berkeley, CA 94720, USA, Department of Genetics, Stanford University School of Medicine, 3165 Porter Drive, Stanford, CA 94305, USA and Howard Hughes Medical Institute, Center for Biomolecular Science and Engineering, UCSC, 1156 High Street, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkt1168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964947PMC
January 2014

ENCODE whole-genome data in the UCSC genome browser (2011 update).

Nucleic Acids Res 2011 Jan 30;39(Database issue):D871-5. Epub 2010 Oct 30.

Center for Biomolecular Science and Engineering, School of Engineering and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkq1017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013645PMC
January 2011

ENCODE whole-genome data in the UCSC Genome Browser.

Nucleic Acids Res 2010 Jan 17;38(Database issue):D620-5. Epub 2009 Nov 17.

Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkp961DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808953PMC
January 2010

The ENCODE Project at UC Santa Cruz.

Nucleic Acids Res 2007 Jan 13;35(Database issue):D663-7. Epub 2006 Dec 13.

Department of Biomolecular Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkl1017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781110PMC
January 2007

Variation resources at UC Santa Cruz.

Nucleic Acids Res 2007 Jan 6;35(Database issue):D716-20. Epub 2006 Dec 6.

Department of Biomolecular Engineering, University of California at Santa Cruz, Santa Cruz, CA, USA.

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http://dx.doi.org/10.1093/nar/gkl953DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781230PMC
January 2007