Publications by authors named "Brian Pierce"

96Publications

An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants.

Structure 2021 Jan 29. Epub 2021 Jan 29.

University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD 20850, USA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA. Electronic address:

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January 2021

Impact of Pre-Existing Mitral Regurgitation Following Left Ventricular Assist Device Implant.

Semin Thorac Cardiovasc Surg 2021 Jan 12. Epub 2021 Jan 12.

Department of Cardiothoracic Surgery, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania. Electronic address:

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January 2021

High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.

Bioinformatics 2020 Dec 23. Epub 2020 Dec 23.

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.

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December 2020

Late Presentation of Uterine Rupture Following Vaginal Birth After Cesarean Delivery: A Case Report.

AJP Rep 2020 Jul 23;10(3):e300-e303. Epub 2020 Sep 23.

Department of Obstetrics and Gynecology, Division of Maternal-Fetal Medicine, Tripler Army Medical Center, Honolulu, Hawaii.

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July 2020

CoV3D: a database of high resolution coronavirus protein structures.

Nucleic Acids Res 2021 01;49(D1):D282-D287

University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD 20850, USA.

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January 2021

Pandemic Notes From a Maine Direct Primary Care Practice.

J Ambul Care Manage 2020 Oct/Dec;43(4):290-293

Megunticook Family Medicine, Rockport, Maine.

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September 2020

CoV3D: A database of high resolution coronavirus protein structures.

bioRxiv 2020 Jun 1. Epub 2020 Jun 1.

University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD, USA.

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June 2020

and Potency of Polyphosphazene Immunoadjuvants with Hepatitis C Virus Antigen and the Role of Their Supramolecular Assembly.

Mol Pharm 2021 02 23;18(2):726-734. Epub 2020 Jun 23.

Institute for Bioscience and Biotechnology Research, University of Maryland, Rockville, Maryland 20850, United States.

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February 2021

Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.

Nat Commun 2020 06 9;11(1):2908. Epub 2020 Jun 9.

W.M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD, 20850, USA.

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June 2020

Macromolecular modeling and design in Rosetta: recent methods and frameworks.

Authors:
Julia Koehler Leman Brian D Weitzner Steven M Lewis Jared Adolf-Bryfogle Nawsad Alam Rebecca F Alford Melanie Aprahamian David Baker Kyle A Barlow Patrick Barth Benjamin Basanta Brian J Bender Kristin Blacklock Jaume Bonet Scott E Boyken Phil Bradley Chris Bystroff Patrick Conway Seth Cooper Bruno E Correia Brian Coventry Rhiju Das René M De Jong Frank DiMaio Lorna Dsilva Roland Dunbrack Alexander S Ford Brandon Frenz Darwin Y Fu Caleb Geniesse Lukasz Goldschmidt Ragul Gowthaman Jeffrey J Gray Dominik Gront Sharon Guffy Scott Horowitz Po-Ssu Huang Thomas Huber Tim M Jacobs Jeliazko R Jeliazkov David K Johnson Kalli Kappel John Karanicolas Hamed Khakzad Karen R Khar Sagar D Khare Firas Khatib Alisa Khramushin Indigo C King Robert Kleffner Brian Koepnick Tanja Kortemme Georg Kuenze Brian Kuhlman Daisuke Kuroda Jason W Labonte Jason K Lai Gideon Lapidoth Andrew Leaver-Fay Steffen Lindert Thomas Linsky Nir London Joseph H Lubin Sergey Lyskov Jack Maguire Lars Malmström Enrique Marcos Orly Marcu Nicholas A Marze Jens Meiler Rocco Moretti Vikram Khipple Mulligan Santrupti Nerli Christoffer Norn Shane Ó'Conchúir Noah Ollikainen Sergey Ovchinnikov Michael S Pacella Xingjie Pan Hahnbeom Park Ryan E Pavlovicz Manasi Pethe Brian G Pierce Kala Bharath Pilla Barak Raveh P Douglas Renfrew Shourya S Roy Burman Aliza Rubenstein Marion F Sauer Andreas Scheck William Schief Ora Schueler-Furman Yuval Sedan Alexander M Sevy Nikolaos G Sgourakis Lei Shi Justin B Siegel Daniel-Adriano Silva Shannon Smith Yifan Song Amelie Stein Maria Szegedy Frank D Teets Summer B Thyme Ray Yu-Ruei Wang Andrew Watkins Lior Zimmerman Richard Bonneau

Nat Methods 2020 07 1;17(7):665-680. Epub 2020 Jun 1.

Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.

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July 2020

Decidual Granulomata of Unclear Significance.

Pediatr Dev Pathol 2020 Sep-Oct;23(5):352-355. Epub 2020 Apr 27.

Department of Pathology, Brooke Army Medical Center, San Antonio, Texas.

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April 2020

Modeling and Viewing T Cell Receptors Using TCRmodel and TCR3d.

Methods Mol Biol 2020 ;2120:197-212

Institute for Bioscience and Biotechnology Research, University of Maryland, Rockville, MD, USA.

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February 2021

External temperature and distance from nearest entrance influence microclimates of cave and culvert-roosting tri-colored bats ().

Ecol Evol 2019 Dec 11;9(24):14042-14052. Epub 2019 Dec 11.

Department of Wildlife and Fisheries Sciences Texas A&M University College Station Texas.

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December 2019

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.

Authors:
Marc F Lensink Guillaume Brysbaert Nurul Nadzirin Sameer Velankar Raphaël A G Chaleil Tereza Gerguri Paul A Bates Elodie Laine Alessandra Carbone Sergei Grudinin Ren Kong Ran-Ran Liu Xi-Ming Xu Hang Shi Shan Chang Miriam Eisenstein Agnieszka Karczynska Cezary Czaplewski Emilia Lubecka Agnieszka Lipska Paweł Krupa Magdalena Mozolewska Łukasz Golon Sergey Samsonov Adam Liwo Silvia Crivelli Guillaume Pagès Mikhail Karasikov Maria Kadukova Yumeng Yan Sheng-You Huang Mireia Rosell Luis A Rodríguez-Lumbreras Miguel Romero-Durana Lucía Díaz-Bueno Juan Fernandez-Recio Charles Christoffer Genki Terashi Woong-Hee Shin Tunde Aderinwale Sai Raghavendra Maddhuri Venkata Subraman Daisuke Kihara Dima Kozakov Sandor Vajda Kathryn Porter Dzmitry Padhorny Israel Desta Dmitri Beglov Mikhail Ignatov Sergey Kotelnikov Iain H Moal David W Ritchie Isaure Chauvot de Beauchêne Bernard Maigret Marie-Dominique Devignes Maria E Ruiz Echartea Didier Barradas-Bautista Zhen Cao Luigi Cavallo Romina Oliva Yue Cao Yang Shen Minkyung Baek Taeyong Park Hyeonuk Woo Chaok Seok Merav Braitbard Lirane Bitton Dina Scheidman-Duhovny Justas Dapkūnas Kliment Olechnovič Česlovas Venclovas Petras J Kundrotas Saveliy Belkin Devlina Chakravarty Varsha D Badal Ilya A Vakser Thom Vreven Sweta Vangaveti Tyler Borrman Zhiping Weng Johnathan D Guest Ragul Gowthaman Brian G Pierce Xianjin Xu Rui Duan Liming Qiu Jie Hou Benjamin Ryan Merideth Zhiwei Ma Jianlin Cheng Xiaoqin Zou Panagiotis I Koukos Jorge Roel-Touris Francesco Ambrosetti Cunliang Geng Jörg Schaarschmidt Mikael E Trellet Adrien S J Melquiond Li Xue Brian Jiménez-García Charlotte W van Noort Rodrigo V Honorato Alexandre M J J Bonvin Shoshana J Wodak

Proteins 2019 12 25;87(12):1200-1221. Epub 2019 Oct 25.

VIB Structural Biology Research Center, VUB, Brussels, Belgium.

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December 2019

Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen.

Proteins 2020 03 21;88(3):503-513. Epub 2019 Oct 21.

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana.

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March 2020