Brian P Dalrymple

Brian P Dalrymple

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Brian P Dalrymple

Brian P Dalrymple

Publications by authors named "Brian P Dalrymple"

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43Publications

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A comparison of transcriptomic patterns measured in the skin of Chinese fine and coarse wool sheep breeds.

Sci Rep 2017 10 30;7(1):14301. Epub 2017 Oct 30.

CSIRO Agriculture and Food, Queensland Bioscience Precinct, 306 Carmody Rd, 4067, Queensland, Australia.

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http://dx.doi.org/10.1038/s41598-017-14772-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662721PMC
October 2017

A gene expression estimator of intramuscular fat percentage for use in both cattle and sheep.

J Anim Sci Biotechnol 2014 16;5(1):35. Epub 2014 Jun 16.

CSIRO Animal, Food and Health Sciences, St. Lucia QLD 4067, Australia.

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http://dx.doi.org/10.1186/2049-1891-5-35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4099020PMC
July 2014

A divergent Artiodactyl MYADM-like repeat is associated with erythrocyte traits and weight of lamb weaned in domestic sheep.

PLoS One 2013 30;8(8):e74700. Epub 2013 Aug 30.

Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Pullman, Washington, United States of America ; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074700PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758307PMC
April 2014

Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data.

Gene Expr Patterns 2013 Mar-Apr;13(3-4):109-25. Epub 2013 Feb 16.

Computational and Systems Biology Group, CSIRO Food Futures and CSIRO Animal, Food and Health Sciences, 306 Carmody Road, St. Lucia, QLD 4072, Australia.

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http://dx.doi.org/10.1016/j.gep.2013.02.001DOI Listing
September 2013

Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

PLoS One 2012 26;7(9):e46159. Epub 2012 Sep 26.

Computational and Systems Biology, Commonwealth Scientific and Industrial Research Organisation (CSIRO) Animal, Food and Health Sciences, Queensland Bioscience Precinct, St. Lucia, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046159PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458843PMC
April 2013

Beyond differential expression: the quest for causal mutations and effector molecules.

BMC Genomics 2012 Jul 31;13:356. Epub 2012 Jul 31.

Computational and Systems BiologyCSIRO Livestock Industries, 306 Carmody Road St, Lucia, Brisbane, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-13-356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3444927PMC
July 2012

Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins.

PLoS One 2011 23;6(9):e25457. Epub 2011 Sep 23.

Computational and Systems Biology, CSIRO Livestock Industries, Queensland Bioscience Precinct, St. Lucia, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025457PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179510PMC
February 2012

Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

Physiol Genomics 2011 May 15;43(9):467-78. Epub 2011 Feb 15.

Australian Cooperative Research Centre for Beef Genetic Technologies, University of New England, Armidale, New South Wales.

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http://dx.doi.org/10.1152/physiolgenomics.00226.2010DOI Listing
May 2011

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle.

BMC Genomics 2011 Jan 12;12:23. Epub 2011 Jan 12.

Computational and Systems Biology, CSIRO Food Futures Flagship and CSIRO Livestock Industries, 306 Carmody Rd, St. Lucia, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-12-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3025955PMC
January 2011

Quality control of the sheep bacterial artificial chromosome library, CHORI-243.

BMC Res Notes 2010 Dec 13;3:334. Epub 2010 Dec 13.

CSIRO Livestock Industries, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1756-0500-3-334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020178PMC
December 2010

Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes.

BMC Genomics 2010 Aug 3;11:458. Epub 2010 Aug 3.

CSIRO Livestock Industries, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-11-458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091654PMC
August 2010

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

Bioinformatics 2010 Apr 9;26(7):896-904. Epub 2010 Feb 9.

Bioinformatics Group, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btq051DOI Listing
April 2010

Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks.

PLoS One 2009 Oct 1;4(10):e7249. Epub 2009 Oct 1.

Food Futures Flagship and Livestock Industries, Commonwealth Scientific and Industrial Research Organisation, Queensland Bioscience Precinct, St. Lucia, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007249PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2749936PMC
October 2009

A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.

PLoS Comput Biol 2009 May 1;5(5):e1000382. Epub 2009 May 1.

Food Futures Flagship and Livestock Industries, Commonwealth Scientific and Industrial Research Organisation, Queensland Bioscience Precinct, St Lucia Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1371/journal.pcbi.1000382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671163PMC
May 2009

Analysis of the complement and molecular evolution of tRNA genes in cow.

BMC Genomics 2009 Apr 24;10:188. Epub 2009 Apr 24.

CSIRO Livestock Industries, Queensland Biosciences Precinct, St Lucia, QLD, Australia.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-10-188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680898PMC
April 2009

A multiway analysis for identifying high integrity bovine BACs.

BMC Genomics 2009 Jan 23;10:46. Epub 2009 Jan 23.

CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660975PMC
January 2009

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle.

BMC Syst Biol 2008 Oct 22;2:88. Epub 2008 Oct 22.

CSIRO, Food Futures Flagship, Queensland Bioscience Precinct, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1752-0509-2-88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2596796PMC
October 2008

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes.

BioData Min 2008 Sep 19;1(1). Epub 2008 Sep 19.

Computational and Systems Biology, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St, Lucia, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1186/1756-0381-1-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556670PMC
September 2008

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach.

Genome Res 2008 Jun 9;18(6):957-64. Epub 2008 May 9.

CSIRO Livestock Industries, Queensland Bioscience Precinct, St. Lucia QLD 4067, Australia.

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http://dx.doi.org/10.1101/gr.074740.107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2413163PMC
June 2008

Origin, evolution, and biological role of miRNA cluster in DLK-DIO3 genomic region in placental mammals.

Mol Biol Evol 2008 May 14;25(5):939-48. Epub 2008 Feb 14.

Commonwealth Scientific and Industrial Research Organisation CSIRO Livestock Industries, Queensland Bioscience Precinct QBP, St Lucia, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1093/molbev/msn045DOI Listing
May 2008

Identification of putative DnaN-binding motifs in plasmid replication initiation proteins.

Plasmid 2007 Jan 12;57(1):82-8. Epub 2006 Sep 12.

CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, Qld. 4067, Australia.

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http://dx.doi.org/10.1016/j.plasmid.2006.07.005DOI Listing
January 2007

A gene coexpression network for bovine skeletal muscle inferred from microarray data.

Physiol Genomics 2006 Dec 19;28(1):76-83. Epub 2006 Sep 19.

Bioinformatics Group, Commonwealth Scientific and Industrial Research Organisation Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://physiolgenomics.physiology.org/content/physiolgenomic
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http://physiolgenomics.physiology.org/lookup/doi/10.1152/phy
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http://dx.doi.org/10.1152/physiolgenomics.00105.2006DOI Listing
December 2006

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.

Bioinformatics 2006 Oct 24;22(19):2396-404. Epub 2006 Jul 24.

CSIRO Livestock Industries, Queensland Bioscience Precinct 306 Carmody Road, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btl392DOI Listing
October 2006

Characterisation and application of a bovine U6 promoter for expression of short hairpin RNAs.

BMC Biotechnol 2005 May 11;5:13. Epub 2005 May 11.

CSIRO Livestock Industries, Australian Animal Health Laboratory, Geelong, VIC 3220, Australia.

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http://dx.doi.org/10.1186/1472-6750-5-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1142307PMC
May 2005

Validation of alternative methods of data normalization in gene co-expression studies.

Bioinformatics 2005 Apr 25;21(7):1112-20. Epub 2004 Nov 25.

Bioinformatics Group, CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/bti124DOI Listing
April 2005

An interactive bovine in silico SNP database (IBISS).

Mamm Genome 2004 Oct;15(10):819-27

Queensland Bioscience Precinct, CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, Australia.

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http://dx.doi.org/10.1007/s00335-004-2382-4DOI Listing
October 2004

Cellular localisation of the clamp protein during DNA replication.

FEMS Microbiol Lett 2002 Nov;216(2):255-62

CSIRO Division of Livestock Industries, 120 Meiers Road, 4068, Indooroopilly, Qld, Australia.

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http://dx.doi.org/10.1111/j.1574-6968.2002.tb11444.xDOI Listing
November 2002

16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep.

Microbiology 1999 Jul;145 ( Pt 7):1797-1807

CSIRO Division of Tropical Agriculture, Long Pocket Laboratories, Private bag #3, Indooroopilly 4068, Australia.

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http://mic.microbiologyresearch.org/content/journal/micro/10
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http://dx.doi.org/10.1099/13500872-145-7-1797DOI Listing
July 1999