Brian Dalrymple

Brian Dalrymple

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Brian Dalrymple

Publications by authors named "Brian Dalrymple"

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A comparison of transcriptomic patterns measured in the skin of Chinese fine and coarse wool sheep breeds.

Sci Rep 2017 10 30;7(1):14301. Epub 2017 Oct 30.

CSIRO Agriculture and Food, Queensland Bioscience Precinct, 306 Carmody Rd, 4067, Queensland, Australia.

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http://dx.doi.org/10.1038/s41598-017-14772-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662721PMC
October 2017

Development and optimization of hardware for delta relaxation enhanced MRI.

Magn Reson Med 2014 Oct 11;72(4):1182-90. Epub 2013 Nov 11.

Physics and Astronomy, Western University, London, Ontario, Canada.

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http://doi.wiley.com/10.1002/mrm.25014
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http://dx.doi.org/10.1002/mrm.25014DOI Listing
October 2014

A gene expression estimator of intramuscular fat percentage for use in both cattle and sheep.

J Anim Sci Biotechnol 2014 16;5(1):35. Epub 2014 Jun 16.

CSIRO Animal, Food and Health Sciences, St. Lucia QLD 4067, Australia.

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http://dx.doi.org/10.1186/2049-1891-5-35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4099020PMC
July 2014

New head gradient coil design and construction techniques.

J Magn Reson Imaging 2014 May 9;39(5):1088-95. Epub 2013 Oct 9.

University of Western Ontario, Physics and Astronomy Building, London, Ontario, Canada.

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http://dx.doi.org/10.1002/jmri.24254DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3981965PMC
May 2014

A divergent Artiodactyl MYADM-like repeat is associated with erythrocyte traits and weight of lamb weaned in domestic sheep.

PLoS One 2013 30;8(8):e74700. Epub 2013 Aug 30.

Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Pullman, Washington, United States of America ; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074700PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758307PMC
April 2014

Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data.

Gene Expr Patterns 2013 Mar-Apr;13(3-4):109-25. Epub 2013 Feb 16.

Computational and Systems Biology Group, CSIRO Food Futures and CSIRO Animal, Food and Health Sciences, 306 Carmody Road, St. Lucia, QLD 4072, Australia.

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http://dx.doi.org/10.1016/j.gep.2013.02.001DOI Listing
September 2013

Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

PLoS One 2012 26;7(9):e46159. Epub 2012 Sep 26.

Computational and Systems Biology, Commonwealth Scientific and Industrial Research Organisation (CSIRO) Animal, Food and Health Sciences, Queensland Bioscience Precinct, St. Lucia, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046159PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458843PMC
April 2013

Beyond differential expression: the quest for causal mutations and effector molecules.

BMC Genomics 2012 Jul 31;13:356. Epub 2012 Jul 31.

Computational and Systems BiologyCSIRO Livestock Industries, 306 Carmody Road St, Lucia, Brisbane, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-13-356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3444927PMC
July 2012

Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins.

PLoS One 2011 23;6(9):e25457. Epub 2011 Sep 23.

Computational and Systems Biology, CSIRO Livestock Industries, Queensland Bioscience Precinct, St. Lucia, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025457PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179510PMC
February 2012

Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

Physiol Genomics 2011 May 15;43(9):467-78. Epub 2011 Feb 15.

Australian Cooperative Research Centre for Beef Genetic Technologies, University of New England, Armidale, New South Wales.

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http://dx.doi.org/10.1152/physiolgenomics.00226.2010DOI Listing
May 2011

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle.

BMC Genomics 2011 Jan 12;12:23. Epub 2011 Jan 12.

Computational and Systems Biology, CSIRO Food Futures Flagship and CSIRO Livestock Industries, 306 Carmody Rd, St. Lucia, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-12-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3025955PMC
January 2011

Quality control of the sheep bacterial artificial chromosome library, CHORI-243.

BMC Res Notes 2010 Dec 13;3:334. Epub 2010 Dec 13.

CSIRO Livestock Industries, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1756-0500-3-334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020178PMC
December 2010

Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes.

BMC Genomics 2010 Aug 3;11:458. Epub 2010 Aug 3.

CSIRO Livestock Industries, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-11-458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091654PMC
August 2010

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

Bioinformatics 2010 Apr 9;26(7):896-904. Epub 2010 Feb 9.

Bioinformatics Group, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btq051DOI Listing
April 2010

Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks.

PLoS One 2009 Oct 1;4(10):e7249. Epub 2009 Oct 1.

Food Futures Flagship and Livestock Industries, Commonwealth Scientific and Industrial Research Organisation, Queensland Bioscience Precinct, St. Lucia, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007249PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2749936PMC
October 2009

A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.

PLoS Comput Biol 2009 May 1;5(5):e1000382. Epub 2009 May 1.

Food Futures Flagship and Livestock Industries, Commonwealth Scientific and Industrial Research Organisation, Queensland Bioscience Precinct, St Lucia Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1371/journal.pcbi.1000382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671163PMC
May 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Analysis of the complement and molecular evolution of tRNA genes in cow.

BMC Genomics 2009 Apr 24;10:188. Epub 2009 Apr 24.

CSIRO Livestock Industries, Queensland Biosciences Precinct, St Lucia, QLD, Australia.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-10-188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680898PMC
April 2009

A multiway analysis for identifying high integrity bovine BACs.

BMC Genomics 2009 Jan 23;10:46. Epub 2009 Jan 23.

CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660975PMC
January 2009

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle.

BMC Syst Biol 2008 Oct 22;2:88. Epub 2008 Oct 22.

CSIRO, Food Futures Flagship, Queensland Bioscience Precinct, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1752-0509-2-88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2596796PMC
October 2008

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes.

BioData Min 2008 Sep 19;1(1). Epub 2008 Sep 19.

Computational and Systems Biology, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St, Lucia, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1186/1756-0381-1-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556670PMC
September 2008

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach.

Genome Res 2008 Jun 9;18(6):957-64. Epub 2008 May 9.

CSIRO Livestock Industries, Queensland Bioscience Precinct, St. Lucia QLD 4067, Australia.

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http://dx.doi.org/10.1101/gr.074740.107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2413163PMC
June 2008

Origin, evolution, and biological role of miRNA cluster in DLK-DIO3 genomic region in placental mammals.

Mol Biol Evol 2008 May 14;25(5):939-48. Epub 2008 Feb 14.

Commonwealth Scientific and Industrial Research Organisation CSIRO Livestock Industries, Queensland Bioscience Precinct QBP, St Lucia, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1093/molbev/msn045DOI Listing
May 2008

Identification of putative DnaN-binding motifs in plasmid replication initiation proteins.

Plasmid 2007 Jan 12;57(1):82-8. Epub 2006 Sep 12.

CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, Qld. 4067, Australia.

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http://dx.doi.org/10.1016/j.plasmid.2006.07.005DOI Listing
January 2007

A gene coexpression network for bovine skeletal muscle inferred from microarray data.

Physiol Genomics 2006 Dec 19;28(1):76-83. Epub 2006 Sep 19.

Bioinformatics Group, Commonwealth Scientific and Industrial Research Organisation Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://physiolgenomics.physiology.org/content/physiolgenomic
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http://physiolgenomics.physiology.org/lookup/doi/10.1152/phy
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http://dx.doi.org/10.1152/physiolgenomics.00105.2006DOI Listing
December 2006

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.

Bioinformatics 2006 Oct 24;22(19):2396-404. Epub 2006 Jul 24.

CSIRO Livestock Industries, Queensland Bioscience Precinct 306 Carmody Road, Brisbane, Queensland 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btl392DOI Listing
October 2006

Conservation of eubacterial replicases.

IUBMB Life 2005 Jun;57(6):413-9

CSIRO Livestock Industries, Queensland Bioscience Precinct, St. Lucia, Queensland, Australia.

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http://dx.doi.org/10.1080/15216540500138246DOI Listing
June 2005

Characterisation and application of a bovine U6 promoter for expression of short hairpin RNAs.

BMC Biotechnol 2005 May 11;5:13. Epub 2005 May 11.

CSIRO Livestock Industries, Australian Animal Health Laboratory, Geelong, VIC 3220, Australia.

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http://dx.doi.org/10.1186/1472-6750-5-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1142307PMC
May 2005

Validation of alternative methods of data normalization in gene co-expression studies.

Bioinformatics 2005 Apr 25;21(7):1112-20. Epub 2004 Nov 25.

Bioinformatics Group, CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/bti124DOI Listing
April 2005

An interactive bovine in silico SNP database (IBISS).

Mamm Genome 2004 Oct;15(10):819-27

Queensland Bioscience Precinct, CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, Australia.

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http://dx.doi.org/10.1007/s00335-004-2382-4DOI Listing
October 2004

Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein.

J Bacteriol 2004 Jun;186(11):3508-15

CSIRO Livestock Industries, Queensland Bioscience Precinct, St. Lucia Queensland Dominion 4067, Australia.

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http://dx.doi.org/10.1128/JB.186.11.3508-3515.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC415757PMC
June 2004

Cellular localisation of the clamp protein during DNA replication.

FEMS Microbiol Lett 2002 Nov;216(2):255-62

CSIRO Division of Livestock Industries, 120 Meiers Road, 4068, Indooroopilly, Qld, Australia.

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http://dx.doi.org/10.1111/j.1574-6968.2002.tb11444.xDOI Listing
November 2002