Brian D Bennett

Brian D Bennett

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Brian D Bennett

Brian D Bennett

Publications by authors named "Brian D Bennett"

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NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.

Nat Commun 2019 07 11;10(1):3072. Epub 2019 Jul 11.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, Durham, NC, 27709, USA.

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http://dx.doi.org/10.1038/s41467-019-10905-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624317PMC
July 2019

Epigenome-wide meta-analysis of DNA methylation and childhood asthma.

J Allergy Clin Immunol 2019 Jun 21;143(6):2062-2074. Epub 2018 Dec 21.

Division of Intramural Research, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00916749183278
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http://dx.doi.org/10.1016/j.jaci.2018.11.043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6556405PMC
June 2019

Dioxin and AHR impairs mesoderm gene expression and cardiac differentiation in human embryonic stem cells.

Sci Total Environ 2019 Feb 20;651(Pt 1):1038-1046. Epub 2018 Sep 20.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA. Electronic address:

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http://dx.doi.org/10.1016/j.scitotenv.2018.09.247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6547817PMC
February 2019

Revealing a human p53 universe.

Nucleic Acids Res 2018 09;46(16):8153-8167

Genome Integrity & Structural Biology Laboratory, National Institute of Environmental Health Sciences/National Institutes of Health, Research Triangle Park, NC 27709, USA.

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http://dx.doi.org/10.1093/nar/gky720DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144829PMC
September 2018

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver.

Sci Rep 2018 07 4;8(1):10138. Epub 2018 Jul 4.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA.

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http://www.nature.com/articles/s41598-018-28356-3
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http://dx.doi.org/10.1038/s41598-018-28356-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031675PMC
July 2018

Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type-Specific Enhancer Activation and Gene Expression.

Environ Health Perspect 2018 04 27;126(4):047015. Epub 2018 Apr 27.

Environmental Epigenomics and Disease Group, Immunity, Inflammation, and Disease Laboratory, National Institute of Environmental Health Sciences (NIEHS), National Institutes of Health (NIH), Department of Health and Human Services (DHHS), Research Triangle Park, North Carolina, USA.

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http://dx.doi.org/10.1289/EHP2395DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071796PMC
April 2018

GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network.

Nat Commun 2018 03 13;9(1):1059. Epub 2018 Mar 13.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, Durham, NC, 27709, USA.

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http://www.nature.com/articles/s41467-018-03478-4
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http://dx.doi.org/10.1038/s41467-018-03478-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5849768PMC
March 2018

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.

Nucleic Acids Res 2017 Dec;45(22):12723-12738

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, RTP, NC 27709, USA.

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http://dx.doi.org/10.1093/nar/gkx884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727408PMC
December 2017

Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes.

PLoS One 2016 9;11(12):e0166486. Epub 2016 Dec 9.

Environmental Genomics Group, Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, 27709, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0166486PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5147832PMC
July 2017

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.

Nucleic Acids Res 2017 Jun;45(10):5678-5690

Office of Scientific Computing, Division of Intramural Research, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA.

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https://academic.oup.com/nar/article/45/10/5678/3603320
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http://dx.doi.org/10.1093/nar/gkx270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449597PMC
June 2017

goSTAG: gene ontology subtrees to tag and annotate genes within a set.

Source Code Biol Med 2017 13;12. Epub 2017 Apr 13.

Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Research Triangle Park, 27709 NC USA.

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http://dx.doi.org/10.1186/s13029-017-0066-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390446PMC
April 2017

CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State.

Stem Cell Reports 2016 11 13;7(5):897-910. Epub 2016 Oct 13.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2016.09.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5106518PMC
November 2016

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.

PLoS Genet 2016 08 3;12(8):e1006224. Epub 2016 Aug 3.

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4972320PMC
August 2016

INO80 governs superenhancer-mediated oncogenic transcription and tumor growth in melanoma.

Genes Dev 2016 06;30(12):1440-53

Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709, USA;

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http://dx.doi.org/10.1101/gad.277178.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926866PMC
June 2016

A Serial shRNA Screen for Roadblocks to Reprogramming Identifies the Protein Modifier SUMO2.

Stem Cell Reports 2016 05 3;6(5):704-716. Epub 2016 Mar 3.

Department of Molecular Biology, Center for Regenerative Medicine and Cancer Center, Massachusetts General Hospital, Boston, MA 02114, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Harvard Stem Cell Institute, Cambridge, MA 02138, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2016.02.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4939549PMC
May 2016

LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells.

Mol Cell Biol 2015 Sep 6;35(18):3225-43. Epub 2015 Jul 6.

Chromatin and Gene Expression Section, Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina, USA

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http://dx.doi.org/10.1128/MCB.00426-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539381PMC
September 2015

Expression of ORAII, a plasma membrane resident subunit of the CRAC channel, in rodent and non-rodent species.

J Histochem Cytochem 2014 Dec 23;62(12):864-78. Epub 2014 Sep 23.

Departments of Pathology (RG, EGV, JP, EP, MQ), Amgen, Inc. Thousand Oaks, CaliforniaTherapeutic Discovery (FFL, VB), Amgen, Inc. Thousand Oaks, CaliforniaDiscovery Toxicology (HJM), Amgen, Inc. Thousand Oaks, CaliforniaInflammation Research (BDB, DHF), Amgen, Inc. Thousand Oaks, California

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http://journals.sagepub.com/doi/10.1369/0022155414554926
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http://dx.doi.org/10.1369/0022155414554926DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4244304PMC
December 2014

Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells.

Cell Rep 2013 Nov 14;5(4):933-40. Epub 2013 Nov 14.

Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC 27710, USA; Program in Molecular Cancer Biology, Duke University, Durham, NC 27710, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893104PMC
November 2013

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

PLoS One 2012 13;7(9):e44635. Epub 2012 Sep 13.

Department of Statistical Science, Institute for Genome Sciences and Policy, Duke University, Durham, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0044635PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3441565PMC
March 2013