Brandon Zerbe

Brandon Zerbe

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Brandon Zerbe

Brandon Zerbe

Publications by authors named "Brandon Zerbe"

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10Publications

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Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.

Proc Natl Acad Sci U S A 2016 07 13;113(30):E4286-93. Epub 2016 Jul 13.

Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794; Institute for Advanced Computational Sciences, Stony Brook University, Stony Brook, NY 11794

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http://dx.doi.org/10.1073/pnas.1603929113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968711PMC
July 2016

Estimating genotype error rates from high-coverage next-generation sequence data.

Genome Res 2014 Nov 10;24(11):1734-9. Epub 2014 Oct 10.

Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California 94143, USA; Institute for Human Genetics, University of California San Francisco, San Francisco, California 94143, USA; Kaiser Permanente Northern California Division of Research, Oakland, California 94612, USA.

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http://dx.doi.org/10.1101/gr.168393.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4216915PMC
November 2014

The pattern of indoor smoking restriction law transitions, 1970-2009: laws are sticky.

Am J Public Health 2013 Aug 13;103(8):e44-51. Epub 2013 Jun 13.

Center for Tobacco Control Research & Education, UCSF, 530 Parnassus Ave. Box 1390, San Francisco, CA 94143-1390, USA.

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http://dx.doi.org/10.2105/AJPH.2013.301449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3727646PMC
August 2013

Relationship between hot spot residues and ligand binding hot spots in protein-protein interfaces.

J Chem Inf Model 2012 Aug 24;52(8):2236-44. Epub 2012 Jul 24.

Department of Biomedical Engineering, Boston University, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1021/ci300175uDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3623692PMC
August 2012

FTSite: high accuracy detection of ligand binding sites on unbound protein structures.

Bioinformatics 2012 Jan 22;28(2):286-7. Epub 2011 Nov 22.

Department of Biomedical Engineering, Boston University, Boston, MA 02115, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr651DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3259439PMC
January 2012

Hot spot analysis for driving the development of hits into leads in fragment-based drug discovery.

J Chem Inf Model 2012 Jan 15;52(1):199-209. Epub 2011 Dec 15.

Department of Biomedical Engineering, Boston University, 44 Cummington Street, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1021/ci200468pDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3264775PMC
January 2012

Analysis of binding site hot spots on the surface of Ras GTPase.

J Mol Biol 2011 Nov 16;413(4):773-89. Epub 2011 Sep 16.

Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1016/j.jmb.2011.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3247908PMC
November 2011

Domain motion and interdomain hot spots in a multidomain enzyme.

Protein Sci 2010 Sep;19(9):1662-72

Department of Biomedical Engineering, Boston University, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1002/pro.446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2975130PMC
September 2010