Brandi L Cantarel

Brandi L Cantarel

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Brandi L Cantarel

Brandi L Cantarel

Publications by authors named "Brandi L Cantarel"

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28Publications

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Using Mothur to Determine Bacterial Community Composition and Structure in 16S Ribosomal RNA Datasets.

Curr Protoc Bioinformatics 2019 Sep;67(1):e83

Bioinformatics Core Facility, Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas.

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http://dx.doi.org/10.1002/cpbi.83DOI Listing
September 2019

GEAMP, a novel gastroesophageal junction carcinoma cell line derived from a malignant pleural effusion.

Lab Invest 2019 Jul 10. Epub 2019 Jul 10.

Esophageal Diseases Center and Division of Hematology-Oncology, Department of Internal Medicine and the Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.

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http://dx.doi.org/10.1038/s41374-019-0278-xDOI Listing
July 2019

IL-1 is a critical regulator of group 2 innate lymphoid cell function and plasticity.

Nat Immunol 2016 06 25;17(6):646-55. Epub 2016 Apr 25.

Baylor Research Institute, Baylor Scott and White Health, Dallas, Texas, USA.

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http://dx.doi.org/10.1038/ni.3447DOI Listing
June 2016

Analysis of archived residual newborn screening blood spots after whole genome amplification.

BMC Genomics 2015 Aug 13;16:602. Epub 2015 Aug 13.

Department of Nutritional Sciences, Dell Pediatric Research Institute, The University of Texas at Austin, 1400 Barbara Jordan Blvd, Austin, TX, 78723, USA.

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http://dx.doi.org/10.1186/s12864-015-1747-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535253PMC
August 2015

Gut microbiota in multiple sclerosis: possible influence of immunomodulators.

J Investig Med 2015 Jun;63(5):729-34

From the *Baylor Institute for Immunology Research, Baylor Health, Dallas, TX; †Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD; ‡Department of Neurology, UCSF School of Medicine, San Francisco; and §Second Genome Inc, South San Francisco, CA; and ∥Department of Neurology, Johns Hopkins University School of Medicine; and ¶Department of Medicine, University of Maryland School of Medicine, Baltimore, MD.

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http://dx.doi.org/10.1097/JIM.0000000000000192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439263PMC
June 2015

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.

ISME J 2014 Aug 13;8(8):1566-76. Epub 2014 Feb 13.

Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Ames, IA, USA.

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http://dx.doi.org/10.1038/ismej.2014.12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817603PMC
August 2014

Complex carbohydrate utilization by the healthy human microbiome.

PLoS One 2012 13;7(6):e28742. Epub 2012 Jun 13.

Institute for Genome Sciences, University of Maryland, School of Medicine, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0028742PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3374616PMC
December 2012

Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data.

Bioinformatics 2011 Dec 7;27(23):3242-9. Epub 2011 Oct 7.

Department of Epidemiology and Public Health, University of Maryland Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://bioinformatics.oxfordjournals.org/content/27/23/3242.
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btr547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3223360PMC
December 2011

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.

Nucleic Acids Res 2009 Jan 5;37(Database issue):D233-8. Epub 2008 Oct 5.

Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Universités Aix-Marseille I & II, 163 Avenue de Luminy, 13288 Marseille, France.

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http://dx.doi.org/10.1093/nar/gkn663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686590PMC
January 2009

The convergence of carbohydrate active gene repertoires in human gut microbes.

Proc Natl Acad Sci U S A 2008 Sep 19;105(39):15076-81. Epub 2008 Sep 19.

Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0807339105
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http://dx.doi.org/10.1073/pnas.0807339105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2546442PMC
September 2008

Exploring the relationship between sequence similarity and accurate phylogenetic trees.

Mol Biol Evol 2006 Nov 4;23(11):2090-100. Epub 2006 Aug 4.

Department of Biochemistry and Molecular Genetics, University of Virginia, VA, USA.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msl080DOI Listing
November 2006

Frequent somatic mutations of the transcription factor ATBF1 in human prostate cancer.

Nat Genet 2005 Apr 6;37(4):407-12. Epub 2005 Mar 6.

Winship Cancer Institute, Department of Hematology and Oncology, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1038/ng1528DOI Listing
April 2005