Brad A Chapman

Brad A Chapman

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Brad A Chapman

Brad A Chapman

Publications by authors named "Brad A Chapman"

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Bioconda: sustainable and comprehensive software distribution for the life sciences.

Nat Methods 2018 07;15(7):475-476

Algorithms for Reproducible Bioinformatics, Genome Informatics, Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen, Essen, Germany.

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http://dx.doi.org/10.1038/s41592-018-0046-7DOI Listing
July 2018

The Bioinformatics Open Source Conference (BOSC) 2013.

Bioinformatics 2015 Jan 14;31(2):299-300. Epub 2014 Jul 14.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, MS 972R525, Berkeley, CA 94720, USA, Information and Computational Sciences, The James Hutton Institute, Dundee DD2 5DA, UK, Bioinformatics Core, Harvard School of Public Health, Boston, MA 02115, USA, The Computational Biology Institute, George Washington University, Washington, DC 20052, USA, Bioinformatics Department, Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland and National Evolutionary Synthesis Center (NESCent), Durham, NC 27705, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287938PMC
January 2015

GEMINI: integrative exploration of genetic variation and genome annotations.

PLoS Comput Biol 2013 18;9(7):e1003153. Epub 2013 Jul 18.

Department of Public Health Sciences and Center for Public Health Genomics, University of Virginia, Charlottesville, Virginia, USA.

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http://dx.doi.org/10.1371/journal.pcbi.1003153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715403PMC
February 2014

Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython.

BMC Bioinformatics 2012 Aug 21;13:209. Epub 2012 Aug 21.

Institute of Bioinformatics, University of Georgia, 120 Green Street, Athens, GA 30602, USA.

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http://dx.doi.org/10.1186/1471-2105-13-209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3468381PMC
August 2012

The genomic binding sites of a noncoding RNA.

Proc Natl Acad Sci U S A 2011 Dec 5;108(51):20497-502. Epub 2011 Dec 5.

Department of Molecular Biology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.

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http://dx.doi.org/10.1073/pnas.1113536108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251105PMC
December 2011

Pairwise selection assembly for sequence-independent construction of long-length DNA.

Nucleic Acids Res 2010 May 1;38(8):2594-602. Epub 2010 Mar 1.

Codon Devices, Inc., One Kendall Square, Building 300, Cambridge, MA 02139, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860126PMC
May 2010

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon.

Trends Genet 2006 Nov 18;22(11):597-602. Epub 2006 Sep 18.

Plant Genome Mapping Laboratory and Department of Genetics, University of Georgia, Athens, GA 30602, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S016895250600296
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http://dx.doi.org/10.1016/j.tig.2006.09.003DOI Listing
November 2006

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.

Proc Natl Acad Sci U S A 2006 Feb 8;103(8):2730-5. Epub 2006 Feb 8.

Plant Genome Mapping Laboratory and Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0507782103
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http://dx.doi.org/10.1073/pnas.0507782103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1413778PMC
February 2006

A comparative phylogenetic approach for dating whole genome duplication events.

Bioinformatics 2004 Jan;20(2):180-5

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth022DOI Listing
January 2004

Structure and evolution of cereal genomes.

Curr Opin Genet Dev 2003 Dec;13(6):644-50

Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1016/j.gde.2003.10.002DOI Listing
December 2003

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.

Nature 2003 Mar;422(6930):433-8

Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1038/nature01521DOI Listing
March 2003