Publications by authors named "Boris Reva"

36Publications

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics.

Cell Syst 2020 Aug 24;11(2):186-195.e9. Epub 2020 Jul 24.

Joint Research Centre for Computational Biomedicine (JRC-COMBINE), RWTH Aachen University, Faculty of Medicine, 52074 Aachen, Germany; European Molecular Biology Laboratory-The European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK; Institute for Computational Biomedicine, Heidelberg University Hospital and Heidelberg University, Faculty of Medicine, Bioquant Heidelberg, Hedelberg 69120, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2020.06.013DOI Listing
August 2020

ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies.

Proteomics 2020 Jun 8:e1900359. Epub 2020 Jun 8.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.

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http://dx.doi.org/10.1002/pmic.201900359DOI Listing
June 2020

Proteogenomic Characterization of Endometrial Carcinoma.

Cell 2020 02 13;180(4):729-748.e26. Epub 2020 Feb 13.

Institute for Systems Genetics, NYU School of Medicine, New York, NY 10016, USA; Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, New York, NY 10016, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2020.01.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7233456PMC
February 2020

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.

Cell 2019 10;179(4):964-983.e31

Department of Pathology, Johns Hopkins University, Baltimore, MD 21231, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7331093PMC
October 2019

Identification and Functional Characterization of V769M, a Novel Germline Variant Associated With Multiple Lung Adenocarcinomas.

JCO Precis Oncol 2017 31;1. Epub 2017 May 31.

, , , , , , , , , , , , , and , Memorial Sloan Kettering Cancer Center; , , , , , , and , Weill Cornell Medical College; and , Icahn Institute for Genomics and Multiscale Biology, New York, NY.

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http://dx.doi.org/10.1200/PO.16.00019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7446373PMC
May 2017

A new molecular signature method for prediction of driver cancer pathways from transcriptional data.

Nucleic Acids Res 2016 06 20;44(11):e110. Epub 2016 Apr 20.

Icahn Institute for Genomics and Multiscale Biology, New York, 10029, USA

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http://dx.doi.org/10.1093/nar/gkw269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914110PMC
June 2016

Mutation Screening of Candidate Genes in Patients with Nonsyndromic Sagittal Craniosynostosis.

Plast Reconstr Surg 2016 Mar;137(3):952-61

New York and Albany, N.Y.; University Park, Pa.; Iowa City, Iowa; Wuhan, People's Republic of China; and Paris and Pessac, France From the Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai; the Congenital Malformations Registry, New York State Department of Health; the Department of Anthropology, Pennsylvania State University; the Department of Epidemiology, University of Iowa; the State Key Laboratory Breeding Base of Basic Science of Stomatology and Key Laboratory of Oral Biomedicine Ministry of Education, School and Hospital of Stomatology, Wuhan University; the Department of Pediatric Hematology, Robert Debré Hospital; and Université de Bordeaux, UMR5199 PACEA, Bordeaux Archaeological Sciences Cluster of Excellence.

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http://dx.doi.org/10.1097/01.prs.0000479978.75545.eeDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770826PMC
March 2016

Strand-specific in vivo screen of cancer-associated miRNAs unveils a role for miR-21(∗) in SCC progression.

Nat Cell Biol 2016 Jan 30;18(1):111-21. Epub 2015 Nov 30.

Howard Hughes Medical Institute and Laboratory of Mammalian Cell Biology and Development, Rockefeller University, New York, New York 10065, USA.

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http://dx.doi.org/10.1038/ncb3275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333577PMC
January 2016

Clinical and in vivo evidence that EGFR S768I mutant lung adenocarcinomas are sensitive to erlotinib.

J Thorac Oncol 2014 Oct;9(10):e73-4

*Thoracic Oncology Service, Department of Medicine; †Computational Biology Center; ‡Thoracic Service, Department of Surgery; §Department of Pathology, Memorial Sloan-Kettering Cancer Center; and ‖Weill Cornell Medical College, New York, NY.

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https://linkinghub.elsevier.com/retrieve/pii/S15560864153071
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http://dx.doi.org/10.1097/JTO.0000000000000221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4655969PMC
October 2014

MAP2K1 (MEK1) Mutations Define a Distinct Subset of Lung Adenocarcinoma Associated with Smoking.

Clin Cancer Res 2015 Apr 28;21(8):1935-43. Epub 2014 Oct 28.

Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York. Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.

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http://dx.doi.org/10.1158/1078-0432.CCR-14-2124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4401580PMC
April 2015

Direct in vivo RNAi screen unveils myosin IIa as a tumor suppressor of squamous cell carcinomas.

Science 2014 Jan;343(6168):309-13

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, NY 10065, USA.

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http://dx.doi.org/10.1126/science.1248627DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4159249PMC
January 2014

Unsuspected collision of synchronous lung adenocarcinomas: a potential cause of aberrant driver mutation profiles.

J Thorac Oncol 2014 Jan;9(1):e1-3

*Department of Pathology, †Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York; ‡Computational Biology Program, Sloan-Kettering Institute, New York, New York; and §Department of Medicine Thoracic Oncology Service, Memorial Sloan-Kettering Cancer Center, New York, New York.

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http://dx.doi.org/10.1097/JTO.0b013e3182a471c3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868006PMC
January 2014

The molecular diversity of Luminal A breast tumors.

Breast Cancer Res Treat 2013 Oct 6;141(3):409-20. Epub 2013 Oct 6.

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA,

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http://dx.doi.org/10.1007/s10549-013-2699-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824397PMC
October 2013

Predicting the functional impact of protein mutations: application to cancer genomics.

Nucleic Acids Res 2011 Sep 3;39(17):e118. Epub 2011 Jul 3.

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, NY 10065, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkr407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3177186PMC
September 2011

p53 regulates hematopoietic stem cell quiescence.

Cell Stem Cell 2009 Jan;4(1):37-48

Molecular Phamacology and Chemistry Program, Sloan-Kettering Institute, Memorial Sloan-Kettering Cancer Center, New York, NY 10021, USA.

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http://dx.doi.org/10.1016/j.stem.2008.11.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2839936PMC
January 2009

A specificity map for the PDZ domain family.

PLoS Biol 2008 Sep;6(9):e239

Terrence Donnelly Center for Cellular and Biomolecular Research, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1371/journal.pbio.0060239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553845PMC
September 2008

Determinants of protein function revealed by combinatorial entropy optimization.

Genome Biol 2007 ;8(11):R232

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2007-8-11-r232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2258190PMC
August 2008

Threading with chemostructural restrictions method for predicting fold and functionally significant residues: application to dipeptidylpeptidase IV (DPP-IV).

Proteins 2002 May;47(2):180-93

Novartis Institute for Biomedical Research, Summit, New Jersey, USA.

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http://dx.doi.org/10.1002/prot.10076DOI Listing
May 2002