Bjorn Usadel

Bjorn Usadel

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Bjorn Usadel

Publications by authors named "Bjorn Usadel"

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High light induces species specific changes in the membrane lipid composition of Chlorella.

Biochem J 2020 Jul;477(13):2543-2559

Institute of Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, 52425 Jülich, Germany.

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http://dx.doi.org/10.1042/BCJ20200160DOI Listing
July 2020

Phosphate starvation causes different stress responses in the lipid metabolism of tomato leaves and roots.

Biochim Biophys Acta Mol Cell Biol Lipids 2020 Jul 6:158763. Epub 2020 Jul 6.

Institute of Bio- and Geosciences (IBG-2: Plant Science), Forschungszentrum Jülich, Wilhelm-Johnen-Straße, D-52428 Jülich, Germany.

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http://dx.doi.org/10.1016/j.bbalip.2020.158763DOI Listing
July 2020

Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species.

J Exp Bot 2020 Jun 27. Epub 2020 Jun 27.

UMR 1332 Biologie du Fruit et Pathologie, INRAE, Univ. Bordeaux, INRAE Nouvelle Aquitaine - Bordeaux, av Edouard Bourlaux, Villenave d'Ornon, France.

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http://dx.doi.org/10.1093/jxb/eraa302DOI Listing
June 2020

Genetic and molecular characterization of multicomponent resistance of against allicin.

Life Sci Alliance 2020 May 31;3(5). Epub 2020 Mar 31.

Department of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen (RWTH Aachen University), Aachen, Germany

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http://dx.doi.org/10.26508/lsa.202000670DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7119367PMC
May 2020

Parallel Metabolomic and Transcriptomic Analysis Reveals Key Factors for Quality Improvement of Tea Plants.

J Agric Food Chem 2020 May 29;68(19):5483-5495. Epub 2020 Apr 29.

Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.

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http://dx.doi.org/10.1021/acs.jafc.0c00434DOI Listing
May 2020

Oxford Nanopore Sequencing: New opportunities for plant genomics?

J Exp Bot 2020 May 27. Epub 2020 May 27.

Institute for Biology I, BioSC, RWTH Aachen University.

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http://dx.doi.org/10.1093/jxb/eraa263DOI Listing
May 2020

Phenotyping: New Windows into the Plant for Breeders.

Annu Rev Plant Biol 2020 Apr 25;71:689-712. Epub 2020 Feb 25.

IBG-2: Plant Sciences, Institute of Bio- and Geosciences, Forschungszentrum Jülich, 52425 Jülich, Germany; email:

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http://dx.doi.org/10.1146/annurev-arplant-042916-041124DOI Listing
April 2020

Transcriptome Analysis of Durum Wheat Flag Leaves Provides New Insights Into the Regulatory Response to Elevated CO and High Temperature.

Front Plant Sci 2019 6;10:1605. Epub 2019 Dec 6.

Institute of Natural Resources and Agrobiology of Salamanca (IRNASA), Consejo Superior de Investigaciones Científicas (CSIC), Salamanca, Spain.

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http://dx.doi.org/10.3389/fpls.2019.01605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6915051PMC
December 2019

Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance.

Plant Physiol 2019 10 23;181(2):817-833. Epub 2019 Jul 23.

Department of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany

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http://dx.doi.org/10.1104/pp.19.00673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776868PMC
October 2019

Modeling Protein Destiny in Developing Fruit.

Plant Physiol 2019 07 23;180(3):1709-1724. Epub 2019 Apr 23.

Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, Institut National de la Recherche Agronomique, Université Bordeaux, F33883 Villenave d'Ornon, France

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http://www.plantphysiol.org/lookup/doi/10.1104/pp.19.00086
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http://dx.doi.org/10.1104/pp.19.00086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6752906PMC
July 2019

Cell type specific transcriptional reprogramming of maize leaves during Ustilago maydis induced tumor formation.

Sci Rep 2019 07 15;9(1):10227. Epub 2019 Jul 15.

Botanical Institute and Cluster of Excellence on Plant Sciences (CEPLAS), BioCenter, University of Cologne, Zülpicher Str. 47a, Cologne, 50674, Germany.

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http://dx.doi.org/10.1038/s41598-019-46734-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6629649PMC
July 2019

MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis.

Mol Plant 2019 06 9;12(6):879-892. Epub 2019 Jan 9.

Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, Germany; Institute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg, RWTH Aachen University, 52074 Aachen, Germany.

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https://linkinghub.elsevier.com/retrieve/pii/S16742052193000
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http://dx.doi.org/10.1016/j.molp.2019.01.003DOI Listing
June 2019

Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus Thecaphora thlaspeos reveal functionally conserved and novel effectors.

New Phytol 2019 05 17;222(3):1474-1492. Epub 2019 Feb 17.

Institute for Microbiology, Cluster of Excellence on Plant Sciences, Heinrich-Heine University, Building 26.12.01, Universitätsstr. 1, Düsseldorf, 40225, Germany.

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http://doi.wiley.com/10.1111/nph.15692
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http://dx.doi.org/10.1111/nph.15692DOI Listing
May 2019

Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer.

Plant Physiol 2019 04 24;179(4):1893-1907. Epub 2019 Jan 24.

Department of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada

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http://dx.doi.org/10.1104/pp.18.01216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6446796PMC
April 2019

TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3.

New Phytol 2019 01 13;221(2):881-895. Epub 2018 Sep 13.

Institute for Botany and Molecular Genetics (IBMG), BioEconomy Science Center, RWTH Aachen University, 52056, Aachen, Germany.

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http://doi.wiley.com/10.1111/nph.15442
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http://dx.doi.org/10.1111/nph.15442DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6585848PMC
January 2019

Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage.

Plant Physiol 2018 11 18;178(3):1045-1064. Epub 2018 Sep 18.

Institute for Bio- and Geosciences (Plant Sciences), Forschungszentrum Jülich, 52425 Juelich, Germany.

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http://dx.doi.org/10.1104/pp.18.00584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6236597PMC
November 2018

The Multifaceted Role of Pectin Methylesterase Inhibitors (PMEIs).

Int J Mol Sci 2018 Sep 21;19(10). Epub 2018 Sep 21.

Institute of Biology 1, Botany and Molecular Genetics, RWTH Aachen University, 52074 Aachen, Germany.

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http://dx.doi.org/10.3390/ijms19102878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213510PMC
September 2018

Monitoring of Plant Protein Post-translational Modifications Using Targeted Proteomics.

Front Plant Sci 2018 17;9:1168. Epub 2018 Aug 17.

Institut für Bio- und Geowissenschaften, IBG-2-Plant Sciences, Forschungszentrum Jülich, Jülich, Germany.

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http://dx.doi.org/10.3389/fpls.2018.01168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107839PMC
August 2018

One-Step Lignocellulose Fractionation by using 2,5-Furandicarboxylic Acid as a Biogenic and Recyclable Catalyst.

ChemSusChem 2018 Jul 19;11(13):2051-2056. Epub 2018 Jun 19.

Institut für Bio- und Geowissenschaften, Pflanzenwissenschaften (IBG-2), Forschungszentrum Jülich, Wilhelm Johnen Straße, 52425, Jülich, Germany.

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http://dx.doi.org/10.1002/cssc.201800653DOI Listing
July 2018

Plant genome and transcriptome annotations: from misconceptions to simple solutions.

Brief Bioinform 2018 05;19(3):437-449

Forschungszentrum Jülich, Wilhelm Johnen Str, 52428, Jülich, Germany.

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http://dx.doi.org/10.1093/bib/bbw135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952960PMC
May 2018

The role of COBRA-LIKE 2 function, as part of the complex network of interacting pathways regulating Arabidopsis seed mucilage polysaccharide matrix organization.

Plant J 2018 05 23;94(3):497-512. Epub 2018 Mar 23.

The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University, Rehovot, 7610001, Israel.

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http://dx.doi.org/10.1111/tpj.13871DOI Listing
May 2018

Monitoring Polysaccharide Dynamics in the Plant Cell Wall.

Plant Physiol 2018 04 27;176(4):2590-2600. Epub 2018 Feb 27.

Institute for Biology I, BioSC, RWTH Aachen University, 52074 Aachen, Germany

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http://dx.doi.org/10.1104/pp.17.01776DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884611PMC
April 2018

How to make a tumour: cell type specific dissection of Ustilago maydis-induced tumour development in maize leaves.

New Phytol 2018 03 4;217(4):1681-1695. Epub 2018 Jan 4.

Botanical Institute and Cluster of Excellence on Plant Sciences (CEPLAS), BioCenter, University of Cologne, Zuelpicher Str. 47a, Cologne, 50674, Germany.

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http://dx.doi.org/10.1111/nph.14960DOI Listing
March 2018

RNAseq analysis of α-proteobacterium Gluconobacter oxydans 621H.

BMC Genomics 2018 01 6;19(1):24. Epub 2018 Jan 6.

IBG-1: Biotechnology, Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, 52425, Jülich, Germany.

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http://dx.doi.org/10.1186/s12864-017-4415-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5756330PMC
January 2018

From plant genomes to phenotypes.

J Biotechnol 2017 Nov 9;261:46-52. Epub 2017 Jun 9.

Forschungszentrum Jülich (FZJ), Institute of Bio- and Geosciences (IBG-2) Plant Sciences, Wilhelm-Johnen-Straße, 52425 Jülich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2017.06.003DOI Listing
November 2017

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives.

J Biotechnol 2017 Nov 8;261:37-45. Epub 2017 Jul 8.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstraße 3, 06466 Seeland, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2017.07.006DOI Listing
November 2017

OrganoCat pretreatment of perennial plants: Synergies between a biogenic fractionation and valuable feedstocks.

Bioresour Technol 2017 Nov 9;244(Pt 1):889-896. Epub 2017 Aug 9.

RWTH Aachen University, Institute of Botany and Molecular Genetics IBMG, Worringer Weg 3, 52074 Aachen, Germany; Bioeconomy Science Center (BioSC), c/o Forschungszentrum Jülich, 52425 Jülich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.biortech.2017.08.027DOI Listing
November 2017

High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.

J Biotechnol 2017 Sep 19;258:197-205. Epub 2017 Apr 19.

Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany; The Bioeconomy Science Center (BioSC), c/o Forschungszentrum Jülich GmbH, 52425 Jülich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2017.04.016DOI Listing
September 2017

Insights into cell wall structure of Sida hermaphrodita and its influence on recalcitrance.

Carbohydr Polym 2017 Jul 20;168:94-102. Epub 2017 Mar 20.

Institute for Botany and Molecular Genetics, RWTH Aachen University, Worringer Weg 3, 52074 Aachen, Germany; Bioeconomy Science Center (BioSC), c/o Forschungszentrum Jülich, 52425 Jülich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.carbpol.2017.03.062DOI Listing
July 2017

Tomato facultative parthenocarpy results from SlAGAMOUS-LIKE 6 loss of function.

Plant Biotechnol J 2017 05 27;15(5):634-647. Epub 2016 Dec 27.

The Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel.

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http://doi.wiley.com/10.1111/pbi.12662
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http://dx.doi.org/10.1111/pbi.12662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399002PMC
May 2017

Early metabolic and transcriptional variations in fruit of natural white-fruited Fragaria vesca genotypes.

Sci Rep 2017 03 22;7:45113. Epub 2017 Mar 22.

Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354 Freising, Germany.

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http://dx.doi.org/10.1038/srep45113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5361166PMC
March 2017

Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios.

Plant Physiol 2016 10 19;172(2):749-764. Epub 2016 Jul 19.

INRA, Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux, 34060 Montpellier, France (E.J.M., C.W., A.C.-L., F.T.);Biometris - Applied Statistics, Department of Plant Science, Wageningen University, 6700AA Wageningen, Netherlands (W.K., F.V.E.);INRA, UMR 0320 / UMR 8120 Génétique Quantitative et Evolution, 91190 Gif-sur-Yvette, France (S.N, S.D.N., C.B., A.C.); INRA, SMH Maïs, Centre de recherche de Bordeaux Aquitaine, 40390 Saint-Martin-De-Hinx, France (J.L.); Centre de Recherche de Chappes, Biogemma, 63720 Chappes, France (S.P.); Syngenta France SAS, 12, Chemin de l'Hobit, BP 27, 31790, Saint-Sauveur, France (N.R.); KWS Saat SE, 37555 Einbeck, Germany (T.P.); Department of Agricultural Sciences, University of Bologna, 40127 Bologna, Italy (R.T.);MTA ATK/ AI CAR HAS, Martonvasar 2462, Hungary (Z.B.);UCL ELIA, 1348 Louvain-la-Neuve, Belgium (X.D.); andInstitute for Botany and Molecular Genetics, BioSC, RWTH Aachen University, 52074 Aachen, Germany (B.U.)

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047082PMC
http://dx.doi.org/10.1104/pp.16.00621DOI Listing
October 2016

The Metabolic Signature of Biomass Formation in Barley.

Plant Cell Physiol 2016 Sep 7;57(9):1943-60. Epub 2016 Jul 7.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D-06466 Gatersleben, Germany

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http://dx.doi.org/10.1093/pcp/pcw117DOI Listing
September 2016

Identification of RNA-binding Proteins in Macrophages by Interactome Capture.

Mol Cell Proteomics 2016 08 8;15(8):2699-714. Epub 2016 Jun 8.

From the ‡Department of Intensive Care and Intermediate Care, University Hospital RWTH Aachen, Pauwelsstr. 30, 52074 Aachen, Germany;

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http://dx.doi.org/10.1074/mcp.M115.056564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974345PMC
August 2016

Extensive Natural Variation in Arabidopsis Seed Mucilage Structure.

Front Plant Sci 2016 7;7:803. Epub 2016 Jun 7.

Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum JülichJülich, Germany; Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen UniversityAachen, Germany.

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http://dx.doi.org/10.3389/fpls.2016.00803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4894908PMC
July 2016

Plant Pathway Databases.

Methods Mol Biol 2016 ;1374:71-87

IBMG: Institute for Biology I, RWTH Aachen University, Worringer Weg 2, 52074, Aachen, Germany.

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http://dx.doi.org/10.1007/978-1-4939-3167-5_4DOI Listing
May 2016

Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings.

Plant Cell Environ 2016 Apr 1;39(4):768-86. Epub 2015 Dec 1.

Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany.

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http://dx.doi.org/10.1111/pce.12642DOI Listing
April 2016

Highly Branched Xylan Made by IRREGULAR XYLEM14 and MUCILAGE-RELATED21 Links Mucilage to Arabidopsis Seeds.

Plant Physiol 2015 Dec 19;169(4):2481-95. Epub 2015 Oct 19.

Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, 52425 Jülich, Germany (C.V., M.G., M.H.-W.S., B.U.); andInstitute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52074 Aachen, Germany (C.V., M.H.-W.S, B.U.).

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http://dx.doi.org/10.1104/pp.15.01441DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4677919PMC
December 2015

Genotype-phenotype modeling considering intermediate level of biological variation: a case study involving sensory traits, metabolites and QTLs in ripe tomatoes.

Mol Biosyst 2015 Nov 7;11(11):3101-10. Epub 2015 Sep 7.

Biometris, Wageningen University and Research Centre, PO Box 16, 6700AA Wageningen, The Netherlands.

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http://dx.doi.org/10.1039/c5mb00477bDOI Listing
November 2015

Towards recommendations for metadata and data handling in plant phenotyping.

J Exp Bot 2015 Sep 4;66(18):5417-27. Epub 2015 Jun 4.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany.

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http://dx.doi.org/10.1093/jxb/erv271DOI Listing
September 2015

MUCILAGE-RELATED10 Produces Galactoglucomannan That Maintains Pectin and Cellulose Architecture in Arabidopsis Seed Mucilage.

Plant Physiol 2015 Sep 28;169(1):403-20. Epub 2015 Jul 28.

Institute for Biosciences and Geosciences (Plant Sciences), Forschungszentrum Jülich, 52425 Juelich, Germany (C.V., M.H.-W.S., B.U., M.G.);Institute for Botany and Molecular Genetics, BioEconomy Science Center, RWTH Aachen University, 52056 Aachen, Germany (C.V., M.H.-W.S., B.Y., B.U.);Institut National de la Recherche Agronomique and AgroParisTech, Institut Jean-Pierre Bourgin, Unité Mixte de Recherche 1318, ERL Centre National de la Recherche Scientifique 3559, Saclay Plant Sciences, F-78026 Versailles, France (A.B., H.M.N.);Joint BioEnergy Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94702 (B.E., H.V.S.); andDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720 (H.V.S.).

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http://www.plantphysiol.org/content/169/1/403.full.pdf
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http://www.plantphysiol.org/lookup/doi/10.1104/pp.15.00851
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http://dx.doi.org/10.1104/pp.15.00851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4577422PMC
September 2015

Quantitative RT-PCR Platform to Measure Transcript Levels of C and N Metabolism-Related Genes in Durum Wheat: Transcript Profiles in Elevated [CO2] and High Temperature at Different Levels of N Supply.

Plant Cell Physiol 2015 Aug 10;56(8):1556-73. Epub 2015 Jun 10.

Institute of Natural Resources and Agrobiology of Salamanca, CSIC, Cordel de Merinas 40-52, Salamanca, 37008 Spain

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http://dx.doi.org/10.1093/pcp/pcv079DOI Listing
August 2015

Starting to gel: how Arabidopsis seed coat epidermal cells produce specialized secondary cell walls.

Int J Mol Sci 2015 Feb 4;16(2):3452-73. Epub 2015 Feb 4.

Institute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, 52425 Jülich, Germany.

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http://dx.doi.org/10.3390/ijms16023452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4346907PMC
February 2015

De novo sequencing and analysis of the lily pollen transcriptome: an open access data source for an orphan plant species.

Plant Mol Biol 2015 Jan 24;87(1-2):69-80. Epub 2014 Oct 24.

Molecular Plant Biophysics and Biochemistry, Depatment of Molecular Biology, University of Salzburg, Billrothstr.11, 5020, Salzburg, Austria.

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http://dx.doi.org/10.1007/s11103-014-0261-2DOI Listing
January 2015

On the current status of Phakopsora pachyrhizi genome sequencing.

Front Plant Sci 2014 27;5:377. Epub 2014 Aug 27.

Department of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University Aachen, Germany.

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http://dx.doi.org/10.3389/fpls.2014.00377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147182PMC
September 2014

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Plant Cell Environ 2014 May 17;37(5):1250-8. Epub 2013 Dec 17.

Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam, Germany.

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http://dx.doi.org/10.1111/pce.12231DOI Listing
May 2014

Plant genome sequencing - applications for crop improvement.

Curr Opin Biotechnol 2014 Apr 21;26:31-7. Epub 2013 Sep 21.

MIPS, Institute for Bioinformatics and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany.

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http://dx.doi.org/10.1016/j.copbio.2013.08.019DOI Listing
April 2014

Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry.

Anal Biochem 2014 Mar 1;448:14-22. Epub 2013 Dec 1.

Joint BioEnergy Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2013.11.026DOI Listing
March 2014

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D1167-75. Epub 2013 Nov 4.

Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia, Department of Knowledge Technologies, JoŽef Stefan Institute, 1000 Ljubljana, Slovenia, Department of Biology, Institute for Biology I, RWTH Aachen University, D-52056 Aachen, Germany and IBG-2: Plant Sciences, Institute for Bio- and Geosciences, Forschungszentrum Jülich, 52425 Jülich, Germany.

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http://dx.doi.org/10.1093/nar/gkt1056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965006PMC
January 2014

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.

Brief Bioinform 2013 Sep 21;14(5):548-55. Epub 2013 Jun 21.

School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR. Tel.: +852-39431302;

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http://dx.doi.org/10.1093/bib/bbt045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3771235PMC
September 2013

Ethanol inducible expression of a mesophilic cellulase avoids adverse effects on plant development.

Biotechnol Biofuels 2013 Apr 16;6(1):53. Epub 2013 Apr 16.

Institute for Molecular Biotechnology (Biology VII), RWTH Aachen University, Worringerweg 1, Aachen, 52074, Germany.

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http://biotechnologyforbiofuels.biomedcentral.com/articles/1
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http://dx.doi.org/10.1186/1754-6834-6-53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3643885PMC
April 2013

The plant transcriptome-from integrating observations to models.

Front Plant Sci 2013 11;4:48. Epub 2013 Mar 11.

Institute for Biology 1, RWTH Aachen University Aachen, Germany ; IBG-2, Pflanzenwissenschaften, Forschungszentrum Jülich Jülich, Germany.

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http://dx.doi.org/10.3389/fpls.2013.00048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593623PMC
March 2013

Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk.

Front Plant Sci 2012 31;3:294. Epub 2012 Dec 31.

Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben, Germany.

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http://dx.doi.org/10.3389/fpls.2012.00294DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3533172PMC
January 2013

LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: a model case for detection of novel mucilage and pectin metabolism genes.

Mol Biosyst 2012 Oct;8(10):2566-74

Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.

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http://dx.doi.org/10.1039/c2mb25096aDOI Listing
October 2012

GabiPD - The GABI Primary Database integrates plant proteomic data with gene-centric information.

Front Plant Sci 2012 9;3:154. Epub 2012 Jul 9.

Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany.

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http://dx.doi.org/10.3389/fpls.2012.00154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3391694PMC
August 2012

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.

Nucleic Acids Res 2012 Jul 8;40(Web Server issue):W622-7. Epub 2012 Jun 8.

Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.

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http://dx.doi.org/10.1093/nar/gks540DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394330PMC
July 2012

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis.

Nucleic Acids Res 2012 Jan 15;40(Database issue):D1313-7. Epub 2011 Nov 15.

School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR.

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http://dx.doi.org/10.1093/nar/gkr1058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245082PMC
January 2012

HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (Solanum tuberosum) tubers.

Plant Cell Physiol 2011 Nov 27;52(11):1957-72. Epub 2011 Sep 27.

Energy Metabolism Research Group, Max Planck Institute of Molecular Plant Physiology, D-14476 Potsdam-Golm, Germany.

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https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/
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http://dx.doi.org/10.1093/pcp/pcr128DOI Listing
November 2011

The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis.

Plant Cell 2011 Apr 8;23(4):1373-90. Epub 2011 Apr 8.

Joint BioEnergy Institute, Feedstocks Division, Lawrence Berkeley National Laboratory, Emeryville, California 94608, USA.

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http://dx.doi.org/10.1105/tpc.111.083931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3101560PMC
April 2011

De-regulation of abscisic acid contents causes abnormal endosperm development in the barley mutant seg8.

Plant J 2010 Nov 5;64(4):589-603. Epub 2010 Oct 5.

Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK), Corrensstraße 3, D-06466 Gatersleben, Germany.

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http://dx.doi.org/10.1111/j.1365-313X.2010.04350.xDOI Listing
November 2010

Quantitation in mass-spectrometry-based proteomics.

Annu Rev Plant Biol 2010 ;61:491-516

Max Planck Institute for Molecular Plant Physiology, Golm, Germany.

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http://www.annualreviews.org/doi/10.1146/annurev-arplant-042
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http://dx.doi.org/10.1146/annurev-arplant-042809-112132DOI Listing
May 2010

Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake.

Plant J 2010 Mar;61(6):1067-91

Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, Germany.

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http://doi.wiley.com/10.1111/j.1365-313X.2010.04142.x
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March 2010

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis.

Mol Syst Biol 2009 13;5:314. Epub 2009 Oct 13.

Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, Germany.

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http://dx.doi.org/10.1038/msb.2009.68DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779082PMC
January 2010

Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm.

Plant Physiol 2010 Jan 4;152(1):29-43. Epub 2009 Nov 4.

Max-Planck-Institute for Molecular Plant Physiology, 14476 Potsdam, Germany.

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http://dx.doi.org/10.1104/pp.109.145318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2799344PMC
January 2010