Publications by authors named "Bjarni V Halldorsson"

78Publications

Read_haps: using read haplotypes to detect same species contamination in DNA sequences.

Bioinformatics 2020 Nov 2. Epub 2020 Nov 2.

deCODE genetics, Reykjavík, 102, Iceland.

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November 2020

Genome-wide association study identifies 74 loci associated with educational attainment.

Authors:
Aysu Okbay Jonathan P Beauchamp Mark Alan Fontana James J Lee Tune H Pers Cornelius A Rietveld Patrick Turley Guo-Bo Chen Valur Emilsson S Fleur W Meddens Sven Oskarsson Joseph K Pickrell Kevin Thom Pascal Timshel Ronald de Vlaming Abdel Abdellaoui Tarunveer S Ahluwalia Jonas Bacelis Clemens Baumbach Gyda Bjornsdottir Johannes H Brandsma Maria Pina Concas Jaime Derringer Nicholas A Furlotte Tessel E Galesloot Giorgia Girotto Richa Gupta Leanne M Hall Sarah E Harris Edith Hofer Momoko Horikoshi Jennifer E Huffman Kadri Kaasik Ioanna P Kalafati Robert Karlsson Augustine Kong Jari Lahti Sven J van der Lee Christiaan deLeeuw Penelope A Lind Karl-Oskar Lindgren Tian Liu Massimo Mangino Jonathan Marten Evelin Mihailov Michael B Miller Peter J van der Most Christopher Oldmeadow Antony Payton Natalia Pervjakova Wouter J Peyrot Yong Qian Olli Raitakari Rico Rueedi Erika Salvi Börge Schmidt Katharina E Schraut Jianxin Shi Albert V Smith Raymond A Poot Beate St Pourcain Alexander Teumer Gudmar Thorleifsson Niek Verweij Dragana Vuckovic Juergen Wellmann Harm-Jan Westra Jingyun Yang Wei Zhao Zhihong Zhu Behrooz Z Alizadeh Najaf Amin Andrew Bakshi Sebastian E Baumeister Ginevra Biino Klaus Bønnelykke Patricia A Boyle Harry Campbell Francesco P Cappuccio Gail Davies Jan-Emmanuel De Neve Panos Deloukas Ilja Demuth Jun Ding Peter Eibich Lewin Eisele Niina Eklund David M Evans Jessica D Faul Mary F Feitosa Andreas J Forstner Ilaria Gandin Bjarni Gunnarsson Bjarni V Halldórsson Tamara B Harris Andrew C Heath Lynne J Hocking Elizabeth G Holliday Georg Homuth Michael A Horan Jouke-Jan Hottenga Philip L de Jager Peter K Joshi Astanand Jugessur Marika A Kaakinen Mika Kähönen Stavroula Kanoni Liisa Keltigangas-Järvinen Lambertus A L M Kiemeney Ivana Kolcic Seppo Koskinen Aldi T Kraja Martin Kroh Zoltan Kutalik Antti Latvala Lenore J Launer Maël P Lebreton Douglas F Levinson Paul Lichtenstein Peter Lichtner David C M Liewald Anu Loukola Pamela A Madden Reedik Mägi Tomi Mäki-Opas Riccardo E Marioni Pedro Marques-Vidal Gerardus A Meddens George McMahon Christa Meisinger Thomas Meitinger Yusplitri Milaneschi Lili Milani Grant W Montgomery Ronny Myhre Christopher P Nelson Dale R Nyholt William E R Ollier Aarno Palotie Lavinia Paternoster Nancy L Pedersen Katja E Petrovic David J Porteous Katri Räikkönen Susan M Ring Antonietta Robino Olga Rostapshova Igor Rudan Aldo Rustichini Veikko Salomaa Alan R Sanders Antti-Pekka Sarin Helena Schmidt Rodney J Scott Blair H Smith Jennifer A Smith Jan A Staessen Elisabeth Steinhagen-Thiessen Konstantin Strauch Antonio Terracciano Martin D Tobin Sheila Ulivi Simona Vaccargiu Lydia Quaye Frank J A van Rooij Cristina Venturini Anna A E Vinkhuyzen Uwe Völker Henry Völzke Judith M Vonk Diego Vozzi Johannes Waage Erin B Ware Gonneke Willemsen John R Attia David A Bennett Klaus Berger Lars Bertram Hans Bisgaard Dorret I Boomsma Ingrid B Borecki Ute Bültmann Christopher F Chabris Francesco Cucca Daniele Cusi Ian J Deary George V Dedoussis Cornelia M van Duijn Johan G Eriksson Barbara Franke Lude Franke Paolo Gasparini Pablo V Gejman Christian Gieger Hans-Jörgen Grabe Jacob Gratten Patrick J F Groenen Vilmundur Gudnason Pim van der Harst Caroline Hayward David A Hinds Wolfgang Hoffmann Elina Hyppönen William G Iacono Bo Jacobsson Marjo-Riitta Järvelin Karl-Heinz Jöckel Jaakko Kaprio Sharon L R Kardia Terho Lehtimäki Steven F Lehrer Patrik K E Magnusson Nicholas G Martin Matt McGue Andres Metspalu Neil Pendleton Brenda W J H Penninx Markus Perola Nicola Pirastu Mario Pirastu Ozren Polasek Danielle Posthuma Christine Power Michael A Province Nilesh J Samani David Schlessinger Reinhold Schmidt Thorkild I A Sørensen Tim D Spector Kari Stefansson Unnur Thorsteinsdottir A Roy Thurik Nicholas J Timpson Henning Tiemeier Joyce Y Tung André G Uitterlinden Veronique Vitart Peter Vollenweider David R Weir James F Wilson Alan F Wright Dalton C Conley Robert F Krueger George Davey Smith Albert Hofman David I Laibson Sarah E Medland Michelle N Meyer Jian Yang Magnus Johannesson Peter M Visscher Tõnu Esko Philipp D Koellinger David Cesarini Daniel J Benjamin

Nature 2016 05 11;533(7604):539-42. Epub 2016 May 11.

Center for Economic and Social Research, University of Southern California, Los Angeles, California 90089-3332, USA.

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May 2016

PopAlu: population-scale detection of Alu polymorphisms.

PeerJ 2015 22;3:e1269. Epub 2015 Sep 22.

deCODE genetics/Amgen , Reykjavík , Iceland ; Institute of Biomedical and Neural Engineering, School of Science and Engineering, Reykjavik University , Reykjavík , Iceland.

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September 2015

PopIns: population-scale detection of novel sequence insertions.

Bioinformatics 2016 04 28;32(7):961-7. Epub 2015 Apr 28.

deCODE genetics/Amgen, Reykjavík, Iceland, Institute of Biomedical and Neural Engineering, Reykjavík University, Reykjavík, Iceland.

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April 2016

A clinical decision support system for the diagnosis, fracture risks and treatment of osteoporosis.

Comput Math Methods Med 2015 1;2015:189769. Epub 2015 Mar 1.

Centre for Rheumatology Research, University Hospital, 101 Reykjavik, Iceland ; Faculty of Medicine, University of Iceland, 101 Reykjavik, Iceland.

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December 2015

KmerStream: streaming algorithms for k-mer abundance estimation.

Bioinformatics 2014 Dec 28;30(24):3541-7. Epub 2014 Oct 28.

Faculty of Industrial Engineering, Mechanical Engineering and Computer Science, University of Iceland, Reykjavík, Iceland, deCODE Genetics/Amgen, Reykjavík, Iceland and School of Science and Engineering, Reykjavík University, Reykjavík, Iceland Faculty of Industrial Engineering, Mechanical Engineering and Computer Science, University of Iceland, Reykjavík, Iceland, deCODE Genetics/Amgen, Reykjavík, Iceland and School of Science and Engineering, Reykjavík University, Reykjavík, Iceland.

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December 2014

An integer programming formulation of the parsimonious loss of heterozygosity problem.

IEEE/ACM Trans Comput Biol Bioinform 2013 Nov-Dec;10(6):1391-402

Reykjavik University, Reykjavik.

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September 2014

Network-based interpretation of genomic variation data.

J Mol Biol 2013 Nov 23;425(21):3964-9. Epub 2013 Jul 23.

School of Science and Engineering, Reykjavík University, 101 Reykjavík, Iceland. Electronic address:

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November 2013

Estimating population size via line graph reconstruction.

Algorithms Mol Biol 2013 Jul 5;8(1):17. Epub 2013 Jul 5.

School of Science and Engineering, Reykjavík University, Menntavegur 1, Reykjavik 101, Iceland.

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July 2013

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism.

Bioinformatics 2012 Jun;28(12):i154-62

Department of Computer Science, Center for Computational Molecular Biology, Brown University, Providence, RI, USA.

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June 2012

PAIR: polymorphic Alu insertion recognition.

BMC Bioinformatics 2012 Apr 19;13 Suppl 6:S7. Epub 2012 Apr 19.

School of Science and Engineering, Reykjavik University, Reykjavík, 101, Iceland.

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April 2012

An algorithm for detecting high frequency copy number polymorphisms using SNP arrays.

J Comput Biol 2011 Aug 5;18(8):955-66. Epub 2011 Jul 5.

School of Science and Engineering, Reykjavík University, Reykjavík, Iceland.

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August 2011

Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.

Authors:
Tuomas O Kilpeläinen M Carola Zillikens Alena Stančákova Francis M Finucane Janina S Ried Claudia Langenberg Weihua Zhang Jacques S Beckmann Jian'an Luan Liesbeth Vandenput Unnur Styrkarsdottir Yanhua Zhou Albert Vernon Smith Jing-Hua Zhao Najaf Amin Sailaja Vedantam So-Youn Shin Talin Haritunians Mao Fu Mary F Feitosa Meena Kumari Bjarni V Halldorsson Emmi Tikkanen Massimo Mangino Caroline Hayward Ci Song Alice M Arnold Yurii S Aulchenko Ben A Oostra Harry Campbell L Adrienne Cupples Kathryn E Davis Angela Döring Gudny Eiriksdottir Karol Estrada José Manuel Fernández-Real Melissa Garcia Christian Gieger Nicole L Glazer Candace Guiducci Albert Hofman Steve E Humphries Bo Isomaa Leonie C Jacobs Antti Jula David Karasik Magnus K Karlsson Kay-Tee Khaw Lauren J Kim Mika Kivimäki Norman Klopp Brigitte Kühnel Johanna Kuusisto Yongmei Liu Osten Ljunggren Mattias Lorentzon Robert N Luben Barbara McKnight Dan Mellström Braxton D Mitchell Vincent Mooser José Maria Moreno Satu Männistö Jeffery R O'Connell Laura Pascoe Leena Peltonen Belén Peral Markus Perola Bruce M Psaty Veikko Salomaa David B Savage Robert K Semple Tatjana Skaric-Juric Gunnar Sigurdsson Kijoung S Song Timothy D Spector Ann-Christine Syvänen Philippa J Talmud Gudmar Thorleifsson Unnur Thorsteinsdottir André G Uitterlinden Cornelia M van Duijn Antonio Vidal-Puig Sarah H Wild Alan F Wright Deborah J Clegg Eric Schadt James F Wilson Igor Rudan Samuli Ripatti Ingrid B Borecki Alan R Shuldiner Erik Ingelsson John-Olov Jansson Robert C Kaplan Vilmundur Gudnason Tamara B Harris Leif Groop Douglas P Kiel Fernando Rivadeneira Mark Walker Inês Barroso Peter Vollenweider Gérard Waeber John C Chambers Jaspal S Kooner Nicole Soranzo Joel N Hirschhorn Kari Stefansson H-Erich Wichmann Claes Ohlsson Stephen O'Rahilly Nicholas J Wareham Elizabeth K Speliotes Caroline S Fox Markku Laakso Ruth J F Loos

Nat Genet 2011 Jun 26;43(8):753-60. Epub 2011 Jun 26.

Medical Research Council (MRC) Epidemiology Unit, Institute of Metabolic Science, Cambridge, UK.

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June 2011

The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS.

J Comput Biol 2011 Mar;18(3):323-33

School of Science and Engineering, Reykjavik University, Reykjavik, Iceland.

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March 2011

Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants.

Pac Symp Biocomput 2011 :88-99

School of Science and Engineering, Reykjavik University, Reykjavik, Iceland.

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November 2013

Impact of genetics on low bone mass in adults.

J Bone Miner Res 2008 Oct;23(10):1584-90

Department of Endocrinology and Metabolism, Landspitali-University Hospital, University of Iceland, Reykjavik, Iceland.

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October 2008

Islands of tractability for parsimony haplotyping.

IEEE/ACM Trans Comput Biol Bioinform 2006 Jul-Sep;3(3):303-11

School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel.

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November 2006

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

J Comput Biol 2006 Mar;13(2):320-35

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

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March 2006

Robustness of inference of haplotype block structure.

J Comput Biol 2003 ;10(1):13-9

Celera Genomics Research, Rockville, MD 20850, USA.

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September 2003

Optimal sequencing by hybridization in rounds.

J Comput Biol 2002 ;9(2):355-69

Department of Mathematical Sciences, Carnegie Mellon University, Pittsburgh, PA, USA.

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October 2002