Publications by authors named "Binghang Liu"

19Publications

XY-Meta: A High-Efficiency Search Engine for Large-Scale Metabolome Annotation with Accurate FDR Estimation.

Anal Chem 2020 04 7;92(8):5701-5707. Epub 2020 Apr 7.

Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes and MOE Key Laboratory of Tumor Molecular Biology, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China.

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http://dx.doi.org/10.1021/acs.analchem.9b03355DOI Listing
April 2020

Water-in-Salt Electrolyte Promotes High-Capacity FeFe(CN) Cathode for Aqueous Al-Ion Battery.

ACS Appl Mater Interfaces 2019 Nov 23;11(44):41356-41362. Epub 2019 Oct 23.

Key Laboratory for Renewable Energy, Beijing Key Laboratory for New Energy Materials and Devices, Institute of Physics , Chinese Academy of Sciences , Beijing 100190 , China.

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http://dx.doi.org/10.1021/acsami.9b14149DOI Listing
November 2019

BASE: a practical de novo assembler for large genomes using long NGS reads.

BMC Genomics 2016 08 31;17 Suppl 5:499. Epub 2016 Aug 31.

Bioinformatics Algorithms Research Laboratory, Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong.

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http://dx.doi.org/10.1186/s12864-016-2829-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009518PMC
August 2016

De novo assembly of a haplotype-resolved human genome.

Nat Biotechnol 2015 Jun 25;33(6):617-22. Epub 2015 May 25.

1] BGI-Shenzhen, Shenzhen, China. [2] Department of Biology, University of Copenhagen, Copenhagen, Denmark. [3] Princess Al Jawhara Albrahim Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia. [4] Macau University of Science and Technology, Taipa, Macau, China. [5] Department of Medicine and State Key Laboratory of Pharmaceutical Biotechnology, University of Hong Kong, Hong Kong, China.

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http://dx.doi.org/10.1038/nbt.3200DOI Listing
June 2015

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly.

Bioinformatics 2012 Nov 8;28(22):2870-4. Epub 2012 Oct 8.

HKU-BGI BAL-Bioinformatics Algorithms and Core Technology Research Laboratory, The University of Hong Kong, Hong Kong.

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http://dx.doi.org/10.1093/bioinformatics/bts563DOI Listing
November 2012

pIRS: Profile-based Illumina pair-end reads simulator.

Bioinformatics 2012 Jun 15;28(11):1533-5. Epub 2012 Apr 15.

BGI-Shenzhen, Shenzhen Biodynamic Optical Imaging Center, Peking University, Beijing, China.

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http://dx.doi.org/10.1093/bioinformatics/bts187DOI Listing
June 2012

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph.

Brief Funct Genomics 2012 Jan 19;11(1):25-37. Epub 2011 Dec 19.

Science and Technology Department, Beijing Genomices Institute, Shenzhen, China.

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http://dx.doi.org/10.1093/bfgp/elr035DOI Listing
January 2012

The genome of the mesopolyploid crop species Brassica rapa.

Nat Genet 2011 Aug 28;43(10):1035-9. Epub 2011 Aug 28.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF, CAAS), Beijing, China.

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http://dx.doi.org/10.1038/ng.919DOI Listing
August 2011

The sequence and de novo assembly of the giant panda genome.

Nature 2010 Jan 13;463(7279):311-7. Epub 2009 Dec 13.

BGI-Shenzhen, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature08696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497PMC
January 2010