Bert Poolman

Bert Poolman

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Bert Poolman

Publications by authors named "Bert Poolman"

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A synthetic metabolic network for physicochemical homeostasis.

Nat Commun 2019 Sep 18;10(1):4239. Epub 2019 Sep 18.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1038/s41467-019-12287-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6751199PMC
September 2019

Coupling efficiency of secondary active transporters.

Curr Opin Biotechnol 2019 Aug 28;58:62-71. Epub 2018 Nov 28.

Department of Biochemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.copbio.2018.11.005DOI Listing
August 2019

Cell Fuelling and Metabolic Energy Conservation in Synthetic Cells.

Chembiochem 2019 Aug 5. Epub 2019 Aug 5.

Department of Biochemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1002/cbic.201900398DOI Listing
August 2019

Decreased Effective Macromolecular Crowding in Escherichia coli Adapted to Hyperosmotic Stress.

J Bacteriol 2019 May 24;201(10). Epub 2019 Apr 24.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands

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http://dx.doi.org/10.1128/JB.00708-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6482933PMC
May 2019

(Membrane) Protein Production in Context.

Trends Biochem Sci 2018 11 13;43(11):858-868. Epub 2018 Sep 13.

Department of Biochemistry, University of Groningen, Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2018.08.009DOI Listing
November 2018

How Important Is Protein Diffusion in Prokaryotes?

Front Mol Biosci 2018 13;5:93. Epub 2018 Nov 13.

Department of Biochemistry, University of Groningen, Groningen, Netherlands.

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http://dx.doi.org/10.3389/fmolb.2018.00093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6243074PMC
November 2018

Influence of Fluorescent Protein Maturation on FRET Measurements in Living Cells.

ACS Sens 2018 09 12;3(9):1735-1742. Epub 2018 Sep 12.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute , University of Groningen , Nijenborgh 4 , 9747 AG Groningen , The Netherlands.

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http://dx.doi.org/10.1021/acssensors.8b00473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167724PMC
September 2018

Method for immobilization of living and synthetic cells for high-resolution imaging and single-particle tracking.

Sci Rep 2018 09 13;8(1):13789. Epub 2018 Sep 13.

Department of Biochemistry University of Groningen Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://www.nature.com/articles/s41598-018-32166-y
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http://dx.doi.org/10.1038/s41598-018-32166-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137044PMC
September 2018

Protein Linkers Provide Limits on the Domain Interactions in the ABC Importer GlnPQ and Determine the Rate of Transport.

J Mol Biol 2018 04 25;430(8):1249-1262. Epub 2018 Feb 25.

Department of Biochemistry, University of Groningen, Nijenborgh 4, Groningen 9747, AG, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2018.02.014DOI Listing
April 2018

Energy Coupling Efficiency in the Type I ABC Transporter GlnPQ.

J Mol Biol 2018 03 9;430(6):853-866. Epub 2018 Feb 9.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, The Netherlands; Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2018.02.001DOI Listing
March 2018

Steric exclusion and protein conformation determine the localization of plasma membrane transporters.

Nat Commun 2018 02 5;9(1):501. Epub 2018 Feb 5.

Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9700AB, Groningen, The Netherlands.

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http://dx.doi.org/10.1038/s41467-018-02864-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799302PMC
February 2018

Responsive DNA G-quadruplex micelles.

Chem Commun (Camb) 2018 Jan;54(3):260-263

Stratingh Institute for Chemistry, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1039/c7cc07899dDOI Listing
January 2018

Real-Time Conformational Changes and Controlled Orientation of Native Proteins Inside a Protein Nanoreactor.

J Am Chem Soc 2017 12 13;139(51):18640-18646. Epub 2017 Dec 13.

Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen , Groningen 9747 AG, The Netherlands.

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http://dx.doi.org/10.1021/jacs.7b10106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6150693PMC
December 2017

Ribosome surface properties may impose limits on the nature of the cytoplasmic proteome.

Elife 2017 11 20;6. Epub 2017 Nov 20.

Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, Netherlands.

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http://dx.doi.org/10.7554/eLife.30084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5726854PMC
November 2017

Ionic Strength Sensing in Living Cells.

ACS Chem Biol 2017 10 6;12(10):2510-2514. Epub 2017 Sep 6.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1021/acschembio.7b00348DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653947PMC
October 2017

Proton-solute coupling mechanism of the maltose transporter from Saccharomyces cerevisiae.

Sci Rep 2017 10 30;7(1):14375. Epub 2017 Oct 30.

Department of Biochemistry Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials University of Groningen Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1038/s41598-017-14438-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662749PMC
October 2017

A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy.

Nat Commun 2017 09 28;8(1):722. Epub 2017 Sep 28.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1038/s41467-017-00718-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5620043PMC
September 2017

Microorganisms maintain crowding homeostasis.

Nat Rev Microbiol 2017 05 27;15(5):309-318. Epub 2017 Mar 27.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute and the Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1038/nrmicro.2017.17DOI Listing
May 2017

Design and Properties of Genetically Encoded Probes for Sensing Macromolecular Crowding.

Biophys J 2017 May;112(9):1929-1939

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Groningen, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2017.04.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425406PMC
May 2017

An updated structural classification of substrate-binding proteins.

FEBS Lett 2016 Dec 23;590(23):4393-4401. Epub 2016 Oct 23.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Zernike Institute for Advanced Materials, University of Groningen, The Netherlands.

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http://dx.doi.org/10.1002/1873-3468.12445DOI Listing
December 2016

On the Spatial Organization of mRNA, Plasmids, and Ribosomes in a Bacterial Host Overexpressing Membrane Proteins.

PLoS Genet 2016 Dec 15;12(12):e1006523. Epub 2016 Dec 15.

Department of Molecular Genetics, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1371/journal.pgen.1006523DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5201305PMC
December 2016

On the mobility, membrane location and functionality of mechanosensitive channels in Escherichia coli.

Sci Rep 2016 09 6;6:32709. Epub 2016 Sep 6.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology &Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1038/srep32709DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011748PMC
September 2016

Asymmetry in inward- and outward-affinity constant of transport explain unidirectional lysine flux in Saccharomyces cerevisiae.

Sci Rep 2016 08 23;6:31443. Epub 2016 Aug 23.

Department of Biochemistry, University of Groningen, Groningen Biomolecular Sciences and Biotechnology Institute, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1038/srep31443DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993999PMC
August 2016

A Plasma Membrane Association Module in Yeast Amino Acid Transporters.

J Biol Chem 2016 07 19;291(31):16024-37. Epub 2016 May 19.

From the Department of Biochemistry, University of Groningen, Groningen Biomolecular Sciences and Biotechnology Institute, and Zernike Institute for Advanced Materials, Nijenborgh 4, 9747 AG Groningen, The Netherlands

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http://dx.doi.org/10.1074/jbc.M115.706770DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965553PMC
July 2016

Relative Rates of Amino Acid Import via the ABC Transporter GlnPQ Determine the Growth Performance of Lactococcus lactis.

J Bacteriol 2016 02 9;198(3):477-85. Epub 2015 Nov 9.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands

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http://dx.doi.org/10.1128/JB.00685-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4719449PMC
February 2016

Engineering Escherichia coli for functional expression of membrane proteins.

Methods Enzymol 2015 20;556:3-21. Epub 2015 Mar 20.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/bs.mie.2015.01.003DOI Listing
January 2016

Active Nuclear Import of Membrane Proteins Revisited.

Cells 2015 Oct 13;4(4):653-73. Epub 2015 Oct 13.

European Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, Netherlands Proteomics Centre, Antonius Deusinglaan 1, Groningen 9713 AV, The Netherlands.

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http://dx.doi.org/10.3390/cells4040653DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4695851PMC
October 2015

Watching conformational dynamics of ABC transporters with single-molecule tools.

Biochem Soc Trans 2015 Oct;43(5):1041-7

Molecular Microscopy Research Group & Single-molecule Biophysics, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands

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http://dx.doi.org/10.1042/BST20150140DOI Listing
October 2015

Emergence of life: Physical chemistry changes the paradigm.

Biol Direct 2015 Jun 10;10:33. Epub 2015 Jun 10.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1186/s13062-015-0060-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460864PMC
June 2015

Size-dependent leak of soluble and membrane proteins through the yeast nuclear pore complex.

Mol Biol Cell 2015 Apr 28;26(7):1386-94. Epub 2015 Jan 28.

European Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, 9713 AV Groningen, Netherlands

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http://dx.doi.org/10.1091/mbc.E14-07-1175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4454183PMC
April 2015

Susceptibility to COPD: differential proteomic profiling after acute smoking.

PLoS One 2014 18;9(7):e102037. Epub 2014 Jul 18.

University of Groningen, University Medical Centre Groningen, Department of Pulmonary Diseases, Groningen Research Institute of Asthma and COPD (GRIAC), Groningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0102037PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103835PMC
March 2015

A sensor for quantification of macromolecular crowding in living cells.

Nat Methods 2015 Mar 2;12(3):227-9, 1 p following 229. Epub 2015 Feb 2.

1] Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, the Netherlands. [2] Zernike Institute for Advanced Materials, University of Groningen, Groningen, the Netherlands.

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http://dx.doi.org/10.1038/nmeth.3257DOI Listing
March 2015

In memoriam: Wilhelmus Nicolaas Konings (1937-2014).

Extremophiles 2015 Mar;19(2):233-4

Department of Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 7, 9747 AG, Groningen, The Netherlands,

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http://dx.doi.org/10.1007/s00792-015-0736-3DOI Listing
March 2015

Intrinsically disordered linker and plasma membrane-binding motif sort Ist2 and Ssy1 to junctions.

Traffic 2015 Feb 28;16(2):135-47. Epub 2014 Dec 28.

European Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, Netherlands Proteomics Centre, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.

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http://dx.doi.org/10.1111/tra.12243DOI Listing
February 2015

Single liposome analysis of peptide translocation by the ABC transporter TAPL.

Proc Natl Acad Sci U S A 2015 Feb 2;112(7):2046-51. Epub 2015 Feb 2.

Institute of Biochemistry and

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http://dx.doi.org/10.1073/pnas.1418100112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4343155PMC
February 2015

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ.

Nat Struct Mol Biol 2015 Jan 8;22(1):57-64. Epub 2014 Dec 8.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, the Netherlands.

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http://www.nature.com/articles/nsmb.2929
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http://dx.doi.org/10.1038/nsmb.2929DOI Listing
January 2015

Impact of osmotic stress on protein diffusion in Lactococcus lactis.

Mol Microbiol 2014 Nov 13;94(4):857-70. Epub 2014 Oct 13.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands Proteomics Centre & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands; Department of Chemistry, Katholieke Universiteit Leuven, Celestijnenlaan 200F, 3001, Heverlee, Belgium.

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http://dx.doi.org/10.1111/mmi.12800DOI Listing
November 2014

Disaccharides impact the lateral organization of lipid membranes.

J Am Chem Soc 2014 Nov 5;136(46):16167-75. Epub 2014 Nov 5.

Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 7, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1021/ja505476cDOI Listing
November 2014

Systematic identification of tRNAome and its dynamics in Lactococcus lactis.

Mol Microbiol 2014 Sep 6;93(5):944-56. Epub 2014 Aug 6.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1111/mmi.12710DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4150846PMC
September 2014

Bacillus subtilis spore protein SpoVAC functions as a mechanosensitive channel.

Mol Microbiol 2014 May 16;92(4):813-23. Epub 2014 Apr 16.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands; TI Food and Nutrition, Wageningen, The Netherlands.

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http://dx.doi.org/10.1111/mmi.12591DOI Listing
May 2014

Regulation of acetate kinase isozymes and its importance for mixed-acid fermentation in Lactococcus lactis.

J Bacteriol 2014 Apr 24;196(7):1386-93. Epub 2014 Jan 24.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1128/JB.01277-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993343PMC
April 2014

Evolved Escherichia coli strains for amplified, functional expression of membrane proteins.

J Mol Biol 2014 Jan 13;426(1):136-49. Epub 2013 Sep 13.

Department of Biochemistry, University of Groningen, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, Nijenborgh 4, 9747 AG Groningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2013.09.009DOI Listing
January 2014

Lactococcus lactis YfiA is necessary and sufficient for ribosome dimerization.

Mol Microbiol 2014 Jan 13;91(2):394-407. Epub 2013 Dec 13.

Department of Biochemisry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre & Zernike Institute for Advance Materials, University of Groningen, Nijenborgh 4, Nijenborgh 7, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1111/mmi.12468DOI Listing
January 2014

Dual action of BPC194: a membrane active peptide killing bacterial cells.

PLoS One 2013 19;8(4):e61541. Epub 2013 Apr 19.

Departments of Biochemistry and Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute (GBB) and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061541PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631201PMC
November 2013

Physicochemical factors controlling the activity and energy coupling of an ionic strength-gated ATP-binding cassette (ABC) transporter.

J Biol Chem 2013 Oct 26;288(41):29862-71. Epub 2013 Aug 26.

From the Departments of Biochemistry and Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre.

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http://dx.doi.org/10.1074/jbc.M113.499327DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795284PMC
October 2013

Functional diversity of tandem substrate-binding domains in ABC transporters from pathogenic bacteria.

Structure 2013 Oct 29;21(10):1879-88. Epub 2013 Aug 29.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands.

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http://dx.doi.org/10.1016/j.str.2013.07.020DOI Listing
October 2013

How crowded is the prokaryotic cytoplasm?

FEBS Lett 2013 Jul 2;587(14):2094-8. Epub 2013 Jun 2.

Mallard Creek Polymers, Inc., 14700 Mallard Creek Road, Charlotte, NC 28262, USA.

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http://dx.doi.org/10.1016/j.febslet.2013.05.051DOI Listing
July 2013

Quantitative analysis of membrane protein transport across the nuclear pore complex.

Traffic 2013 May 21;14(5):487-501. Epub 2013 Feb 21.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1111/tra.12048DOI Listing
May 2013

On the role of individual subunits in MscL gating: "all for one, one for all?".

FASEB J 2013 Mar 27;27(3):882-92. Epub 2012 Nov 27.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1096/fj.12-214361DOI Listing
March 2013

Functional reconstitution and osmoregulatory properties of the ProU ABC transporter from Escherichia coli.

Mol Membr Biol 2013 Mar 18;30(2):138-48. Epub 2012 Dec 18.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands.

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http://dx.doi.org/10.3109/09687688.2012.754060DOI Listing
March 2013

Structure and mode of peptide binding of pheromone receptor PrgZ.

J Biol Chem 2012 Oct 4;287(44):37165-70. Epub 2012 Sep 4.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, University of Groningen, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1074/jbc.M112.386334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3481316PMC
October 2012

Effect of iTRAQ labeling on the relative abundance of peptide fragment ions produced by MALDI-MS/MS.

J Proteome Res 2012 Aug 20;11(8):4044-51. Epub 2012 Jul 20.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1021/pr300083xDOI Listing
August 2012

Hydrophobic gating of mechanosensitive channel of large conductance evidenced by single-subunit resolution.

Proc Natl Acad Sci U S A 2012 Aug 23;109(32):12944-9. Epub 2012 Jul 23.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1073/pnas.1205270109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3420157PMC
August 2012

Structural divergence of paralogous S components from ECF-type ABC transporters.

Proc Natl Acad Sci U S A 2012 Aug 13;109(35):13990-5. Epub 2012 Aug 13.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://www.pnas.org/content/109/35/13990.full.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.1203219109
Publisher Site
http://dx.doi.org/10.1073/pnas.1203219109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435211PMC
August 2012

The transport of integral membrane proteins across the nuclear pore complex.

Nucleus 2012 Jul 22;3(4):322-9. Epub 2012 May 22.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.4161/nucl.20439DOI Listing
July 2012

Functional characterization of amphipathic α-helix in the osmoregulatory ABC transporter OpuA.

Biochemistry 2012 Jun 13;51(25):5142-52. Epub 2012 Jun 13.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1021/bi300451aDOI Listing
June 2012

Evaluation of pulsed-FRAP and conventional-FRAP for determination of protein mobility in prokaryotic cells.

PLoS One 2011 28;6(9):e25664. Epub 2011 Sep 28.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.plos.org/10.1371/journal.pone.0025664
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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025664PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3182251PMC
January 2012

Efficient overproduction of membrane proteins in Lactococcus lactis requires the cell envelope stress sensor/regulator couple CesSR.

PLoS One 2011 19;6(7):e21873. Epub 2011 Jul 19.

Groningen Biomolecular Sciences and Biotechnology Institute, Department of Molecular Genetics, University of Groningen, Groningen, The Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139573PMC
December 2011

Cystathionine β-synthase (CBS) domains 1 and 2 fulfill different roles in ionic strength sensing of the ATP-binding cassette (ABC) transporter OpuA.

J Biol Chem 2011 Oct 30;286(43):37280-91. Epub 2011 Aug 30.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1074/jbc.M111.284059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3199475PMC
October 2011

Structural basis for the enhanced activity of cyclic antimicrobial peptides: the case of BPC194.

Biochim Biophys Acta 2011 Sep 8;1808(9):2197-205. Epub 2011 May 8.

Department of Biochemistry and Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands.

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http://dx.doi.org/10.1016/j.bbamem.2011.05.001DOI Listing
September 2011

Importance of a hydrophobic pocket for peptide binding in lactococcal OppA.

J Bacteriol 2011 Aug 10;193(16):4254-6. Epub 2011 Jun 10.

Biochemistry Department, Groningen Biomolecular Sciences and Biotechnology Center, NPC & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1128/JB.00447-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3147668PMC
August 2011

Long unfolded linkers facilitate membrane protein import through the nuclear pore complex.

Science 2011 Jul 9;333(6038):90-3. Epub 2011 Jun 9.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, Netherlands.

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http://dx.doi.org/10.1126/science.1205741DOI Listing
July 2011

Design and synthesis of ATP-based nucleotide analogues and profiling of nucleotide-binding proteins.

Bioconjug Chem 2011 Jul 30;22(7):1345-53. Epub 2011 Jun 30.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1021/bc100592qDOI Listing
July 2011

The structural basis of modularity in ECF-type ABC transporters.

Nat Struct Mol Biol 2011 Jun 26;18(7):755-60. Epub 2011 Jun 26.

University of Groningen, Groningen Biomolecular Science and Biotechnology Institute, Groningen, The Netherlands.

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http://dx.doi.org/10.1038/nsmb.2073DOI Listing
June 2011

The molecular basis for antimicrobial activity of pore-forming cyclic peptides.

Biophys J 2011 May;100(10):2422-31

Department of Biochemistry and Biophysical Chemistry, Groningen Biomolecular Sciences, Netherlands.

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http://dx.doi.org/10.1016/j.bpj.2011.03.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3093570PMC
May 2011

Overcoming barriers to membrane protein structure determination.

Nat Biotechnol 2011 Apr;29(4):335-40

School of Life and Health Sciences, Aston University, Birmingham, UK.

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http://www.nature.com/articles/nbt.1833
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http://dx.doi.org/10.1038/nbt.1833DOI Listing
April 2011

Reversible optical control of monolayers on water through photoswitchable lipids.

J Phys Chem B 2011 Mar 18;115(10):2294-302. Epub 2011 Feb 18.

FOM Institute AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands.

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http://dx.doi.org/10.1021/jp1113619DOI Listing
March 2011

Quaternary structure of SecA in solution and bound to SecYEG probed at the single molecule level.

Structure 2011 Mar;19(3):430-9

Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, and Zernike Institute for Advanced Materials, University of Groningen, Kerklaan 30, 9751 NN Haren, The Netherlands.

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https://linkinghub.elsevier.com/retrieve/pii/S09692126110002
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http://dx.doi.org/10.1016/j.str.2010.12.016DOI Listing
March 2011

Macromolecule diffusion and confinement in prokaryotic cells.

Curr Opin Biotechnol 2011 Feb 16;22(1):117-26. Epub 2010 Oct 16.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands Proteomics Centre & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.copbio.2010.09.009DOI Listing
February 2011

Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes.

Proc Natl Acad Sci U S A 2011 Jan 4;108(4):1343-8. Epub 2011 Jan 4.

Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1073/pnas.1009362108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3029762PMC
January 2011

De novo design of supercharged, unfolded protein polymers, and their assembly into supramolecular aggregates.

Macromol Rapid Commun 2011 Jan 15;32(2):186-90. Epub 2010 Nov 15.

Department of Polymer Chemistry, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1002/marc.201000491DOI Listing
January 2011

Genome sequences of Lactococcus lactis MG1363 (revised) and NZ9000 and comparative physiological studies.

J Bacteriol 2010 Nov 16;192(21):5806-12. Epub 2010 Jul 16.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands.

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http://dx.doi.org/10.1128/JB.00533-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2953693PMC
November 2010

Apex peptide elution chain selection: a new strategy for selecting precursors in 2D-LC-MALDI-TOF/TOF experiments on complex biological samples.

J Proteome Res 2010 Nov 30;9(11):5922-8. Epub 2010 Sep 30.

Department of Biochemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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http://dx.doi.org/10.1021/pr1006944DOI Listing
November 2010

Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides.

Biophys J 2010 Sep;99(5):1447-54

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.bpj.2010.05.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2931740PMC
September 2010

Lateral diffusion of membrane proteins: consequences of hydrophobic mismatch and lipid composition.

Biophys J 2010 Sep;99(5):1482-9

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre and the Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh, Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.bpj.2010.06.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2931744PMC
September 2010

Evolved Lactococcus lactis strains for enhanced expression of recombinant membrane proteins.

J Mol Biol 2010 Aug 11;401(1):45-55. Epub 2010 Jun 11.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1016/j.jmb.2010.06.002DOI Listing
August 2010

Purification and functional reconstitution of the bacterial protein translocation pore, the SecYEG complex.

Methods Mol Biol 2010 ;619:131-43

Department of Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1007/978-1-60327-412-8_8DOI Listing
July 2010

Molecular sieving properties of the cytoplasm of Escherichia coli and consequences of osmotic stress.

Mol Microbiol 2010 Jul 12;77(1):200-7. Epub 2010 May 12.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, Netherlands.

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http://dx.doi.org/10.1111/j.1365-2958.2010.07201.xDOI Listing
July 2010

A structural classification of substrate-binding proteins.

FEBS Lett 2010 Jun 20;584(12):2606-17. Epub 2010 Apr 20.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands.

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http://doi.wiley.com/10.1016/j.febslet.2010.04.043
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http://dx.doi.org/10.1016/j.febslet.2010.04.043DOI Listing
June 2010

Production of membrane proteins in Escherichia coli and Lactococcus lactis.

Methods Mol Biol 2010 ;601:17-38

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, University of Groningen, The Netherlands.

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http://dx.doi.org/10.1007/978-1-60761-344-2_2DOI Listing
April 2010

A karyopherin acts in localized protein synthesis.

Cell Cycle 2010 Apr;9(7):1281-5

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre & Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.4161/cc.9.7.11110DOI Listing
April 2010

Amino acid accumulation limits the overexpression of proteins in Lactococcus lactis.

PLoS One 2010 Apr 26;5(4):e10317. Epub 2010 Apr 26.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010317PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859938PMC
April 2010

Ligand binding and crystal structures of the substrate-binding domain of the ABC transporter OpuA.

PLoS One 2010 Apr 29;5(4):e10361. Epub 2010 Apr 29.

Biochemistry Department, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, University of Groningen, Groningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010361PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861598PMC
April 2010

Proteomics of Saccharomyces cerevisiae Organelles.

Mol Cell Proteomics 2010 Mar 1;9(3):431-45. Epub 2009 Dec 1.

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1074/mcp.R900002-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849710PMC
March 2010

Lateral diffusion of membrane proteins.

J Am Chem Soc 2009 Sep;131(35):12650-6

Department of Biochemistry, Groningen Biomolecular science and Biotechnology Institute & Zernike Institute of Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1021/ja902853gDOI Listing
September 2009

Biophysical properties of membrane lipids of anammox bacteria: II. Impact of temperature and bacteriohopanoids.

Biochim Biophys Acta 2009 Jul 17;1788(7):1452-7. Epub 2009 Apr 17.

Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB, Den Burg, Texel, The Netherlands.

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http://dx.doi.org/10.1016/j.bbamem.2009.04.005DOI Listing
July 2009

Biophysical properties of membrane lipids of anammox bacteria: I. Ladderane phospholipids form highly organized fluid membranes.

Biochim Biophys Acta 2009 Jul 17;1788(7):1444-51. Epub 2009 Apr 17.

Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB, Den Burg, Texel, The Netherlands.

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http://dx.doi.org/10.1016/j.bbamem.2009.04.008DOI Listing
July 2009

The role of biomacromolecular crowding, ionic strength, and physicochemical gradients in the complexities of life's emergence.

Microbiol Mol Biol Rev 2009 Jun;73(2):371-88

Mallard Creek Polymers, Inc., 14700 Mallard Creek Road, Charlotte, NC 28262, USA.

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http://dx.doi.org/10.1128/MMBR.00010-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2698416PMC
June 2009

The structural basis for peptide selection by the transport receptor OppA.

EMBO J 2009 May 19;28(9):1332-40. Epub 2009 Mar 19.

Biochemistry Department, Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1038/emboj.2009.65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683046PMC
May 2009

Engineering of ion sensing by the cystathionine beta-synthase module of the ABC transporter OpuA.

J Biol Chem 2009 May 27;284(21):14368-76. Epub 2009 Mar 27.

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute, and Zernike Institute for Advanced Materials & Centre for Synthetic Biology, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1074/jbc.M901238200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682885PMC
May 2009

A method for site-specific labeling of multiple protein thiols.

Protein Sci 2009 May;18(5):1033-41

Department of Biochemistry, Groningen Biomolecular Science and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1002/pro.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771305PMC
May 2009

Selenomethionine incorporation in proteins expressed in Lactococcus lactis.

Protein Sci 2009 May;18(5):1121-7

Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

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http://dx.doi.org/10.1002/pro.97DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771314PMC
May 2009