Bernard Henrissat

Bernard Henrissat

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Bernard Henrissat

Publications by authors named "Bernard Henrissat"

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A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract.

Int Microbiol 2019 Dec 14;22(4):429-435. Epub 2019 Mar 14.

Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.

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http://dx.doi.org/10.1007/s10123-019-00068-2DOI Listing
December 2019

A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16).

J Biol Chem 2019 Nov 9;294(44):15973-15986. Epub 2019 Sep 9.

Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada

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http://dx.doi.org/10.1074/jbc.RA119.010619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6827312PMC
November 2019

Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613.

Appl Microbiol Biotechnol 2019 Oct 3;103(19):8145-8155. Epub 2019 Sep 3.

Department of Biotechnology, College of Life Sciences and Biotechnology and Graduate School, Korea University, Seoul, 02841, South Korea.

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http://dx.doi.org/10.1007/s00253-019-10089-6DOI Listing
October 2019

The functional and structural characterization of dehydrogenase belonging to the PQQ dependent family of Carbohydrate-Active Enzymes Family AA12.

Appl Environ Microbiol 2019 Oct 11. Epub 2019 Oct 11.

Architecture et Fonction des Macromolécules Biologique, UMR 7257 CNRS, Aix Marseille Université, USC 1408, Marseille, France

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http://aem.asm.org/lookup/doi/10.1128/AEM.00964-19
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http://dx.doi.org/10.1128/AEM.00964-19DOI Listing
October 2019

Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

J Biol Chem 2019 Sep 19;294(36):13233-13247. Epub 2019 Jul 19.

Michael Smith Laboratories, University of British Columbia, 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada

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http://dx.doi.org/10.1074/jbc.RA119.009861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6737227PMC
September 2019

Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans.

Cell 2019 Sep;179(1):59-73.e13

Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA; Center for Gut Microbiome and Nutrition Research, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.08.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760872PMC
September 2019

The Cellulosome Paradigm in An Extreme Alkaline Environment.

Microorganisms 2019 Sep 12;7(9). Epub 2019 Sep 12.

Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot 7610001, Israel.

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http://dx.doi.org/10.3390/microorganisms7090347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6780208PMC
September 2019

The continuing expansion of CAZymes and their families.

Curr Opin Chem Biol 2019 Sep 20;53:82-87. Epub 2019 Sep 20.

Architecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Université Aix-Marseille, 163 Avenue de Luminy, 13288, Marseille, France; INRA, USC 1408 AFMB, 13288, Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.cbpa.2019.08.004DOI Listing
September 2019

Broad-specificity GH131 β-glucanases are a hallmark of fungi and oomycetes that colonize plants.

Environ Microbiol 2019 Aug 21;21(8):2724-2739. Epub 2019 Apr 21.

INRA, Aix-Marseille Univ, UMR1163, Biodiversité et Biotechnologie Fongiques, BBF, Marseille, France.

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http://dx.doi.org/10.1111/1462-2920.14596DOI Listing
August 2019

Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data.

Plant J 2019 Aug 1;99(4):589-609. Epub 2019 Jul 1.

Umeå Plant Science Center, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umea, Sweden.

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https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14417
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http://dx.doi.org/10.1111/tpj.14417DOI Listing
August 2019

Intrinsic dynamic behavior of enzyme:substrate complexes govern the catalytic action of β-galactosidases across clan GH-A.

Sci Rep 2019 Jul 17;9(1):10346. Epub 2019 Jul 17.

Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, F-13288, Marseille, France.

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http://dx.doi.org/10.1038/s41598-019-46589-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637243PMC
July 2019

Evolution and comparative genomics of the most common Trichoderma species.

BMC Genomics 2019 Jun 12;20(1):485. Epub 2019 Jun 12.

Microbiology and Applied Genomics Group, Research Area Biochemical Technology, Institute of Chemical, Environmental & Bioscience Engineering (ICEBE), TU Wien, Vienna, Austria.

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http://dx.doi.org/10.1186/s12864-019-5680-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6560777PMC
June 2019

Bacteroidetes use thousands of enzyme combinations to break down glycans.

Nat Commun 2019 05 3;10(1):2043. Epub 2019 May 3.

Architecture et Fonction des Macromolécules Biologiques (AFMB), Centre National de la Recherche Scientifique (CNRS, UMR7257), Institut National Agronomique (INRA, USC 1408) and Aix-Marseille Université (AMU), 13288 Marseille cedex 9, Marseille, France.

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http://www.nature.com/articles/s41467-019-10068-5
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http://dx.doi.org/10.1038/s41467-019-10068-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499787PMC
May 2019

Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families.

J Biol Chem 2019 04 28;294(16):6483-6493. Epub 2019 Feb 28.

From the Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom,

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http://dx.doi.org/10.1074/jbc.RA119.007712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6484121PMC
April 2019

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus.

ISME J 2019 03 12;13(3):603-617. Epub 2018 Oct 12.

Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, 1432, Norway.

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http://dx.doi.org/10.1038/s41396-018-0290-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461833PMC
March 2019

Mycobacterium ulcerans mycolactones-fungi crosstalking.

Sci Rep 2019 Feb 28;9(1):3028. Epub 2019 Feb 28.

Aix-Marseille Univ, IRD, MEPHI, IHU Méditerranée Infection, Marseille, France.

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http://www.nature.com/articles/s41598-019-39927-3
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http://dx.doi.org/10.1038/s41598-019-39927-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395692PMC
February 2019

Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.

Mycologia 2018 Mar-Apr;110(2):316-324. Epub 2018 May 29.

a Department of Chemical Sciences , University of Naples Federico II, Complesso Universitario Monte S. Angelo , via Cintia, 4 80126 Naples , Italy.

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http://dx.doi.org/10.1080/00275514.2018.1456835DOI Listing
January 2019

The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development.

New Phytol 2018 12 6;220(4):1309-1321. Epub 2018 Apr 6.

UMR 1136 INRA-Université de Lorraine 'Interactions Arbres/Microorganismes', Laboratoire d'Excellence ARBRE, Centre INRA-Lorraine, 54280, Champenoux, France.

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http://dx.doi.org/10.1111/nph.15113DOI Listing
December 2018

Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability.

Can J Microbiol 2018 Dec 19;64(12):992-1003. Epub 2018 Oct 19.

b Department of Biosystems Engineering, University of Manitoba, Winnipeg, MB R3T 5V6, Canada.

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http://dx.doi.org/10.1139/cjm-2018-0336DOI Listing
December 2018

The human gut microbe encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29.

J Biol Chem 2018 11 27;293(46):17906-17916. Epub 2018 Sep 27.

From the Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom.

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http://dx.doi.org/10.1074/jbc.RA118.004510DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6240882PMC
November 2018

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling .

mSystems 2018 Nov-Dec;3(6). Epub 2018 Nov 20.

Wallenberg Wood Science Center, Department of Biology and Biotechnology, Chalmers University of Technology, Gothenburg, Sweden.

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http://dx.doi.org/10.1128/mSystems.00240-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247017PMC
November 2018

Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases.

Glycobiology 2018 05;28(5):284-294

Copenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine and School of Dentistry, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark.

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https://academic.oup.com/glycob/article/28/5/284/4951582
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http://dx.doi.org/10.1093/glycob/cwy015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6279177PMC
May 2018

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes.

Fungal Genet Biol 2018 03 10;112:40-46. Epub 2017 Aug 10.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; Department of Food and Environmental Sciences, University of Helsinki, Viikinkaari 9, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.fgb.2017.08.001DOI Listing
March 2018

Identification of β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149.

J Biol Chem 2018 02 9;293(8):2865-2876. Epub 2018 Jan 9.

From the Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom,

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http://dx.doi.org/10.1074/jbc.RA117.000936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827456PMC
February 2018

PULDB: the expanded database of Polysaccharide Utilization Loci.

Nucleic Acids Res 2018 01;46(D1):D677-D683

Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, F-13288 Marseille, France.

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http://dx.doi.org/10.1093/nar/gkx1022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753385PMC
January 2018

Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut.

Mol Microbiol 2018 01 1;107(2):249-264. Epub 2017 Dec 1.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.1111/mmi.13881DOI Listing
January 2018

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme.

Microorganisms 2017 Nov 18;5(4). Epub 2017 Nov 18.

Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot 7610001, Israel.

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http://dx.doi.org/10.3390/microorganisms5040074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748583PMC
November 2017

How a Glycoside Hydrolase Recognizes a Helical Polyglucan.

Structure 2017 09;25(9):1319-1321

Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, 13288 Marseille, France; INRA, USC 1408 AFMB, F-13288 Marseille, France. Electronic address:

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http://dx.doi.org/10.1016/j.str.2017.08.004DOI Listing
September 2017

Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone".

MBio 2017 09 12;8(5). Epub 2017 Sep 12.

Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, Florida, USA.

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http://dx.doi.org/10.1128/mBio.01017-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596340PMC
September 2017

Unique organization and unprecedented diversity of the cellulosome system.

Biotechnol Biofuels 2017 7;10:211. Epub 2017 Sep 7.

Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1186/s13068-017-0898-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590126PMC
September 2017

The yeast encodes functional lytic polysaccharide monooxygenases.

Biotechnol Biofuels 2017 12;10:215. Epub 2017 Sep 12.

INRA, Aix Marseille University BBF, Biodiversité et Biotechnologie Fongiques, 13288 Marseille, France.

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http://dx.doi.org/10.1186/s13068-017-0903-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596469PMC
September 2017

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil.

Microbiome 2017 09 18;5(1):122. Epub 2017 Sep 18.

Institute of Microbiology of the CAS, Vídeňská 1083, 14220, Praha 4, Czech Republic.

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http://dx.doi.org/10.1186/s40168-017-0340-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5604414PMC
September 2017

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9.

Carbohydr Res 2017 Aug 13;448:166-174. Epub 2017 Apr 13.

Architecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Université d'Aix-Marseille, France; Institut National de la Recherche Agronomique, USC 1408 AFMB, 13288 Marseille, France; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.carres.2017.04.012DOI Listing
August 2017

An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins.

J Biol Chem 2017 08 21;292(32):13271-13283. Epub 2017 Jun 21.

From the Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom,

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http://dx.doi.org/10.1074/jbc.M117.794578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5555188PMC
August 2017

How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans.

Proc Natl Acad Sci U S A 2017 07 19;114(27):7037-7042. Epub 2017 Jun 19.

Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1704367114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502631PMC
July 2017

Characterization of a mycobacterial cellulase and its impact on biofilm- and drug-induced cellulose production.

Glycobiology 2017 05;27(5):392-399

Université de Montpellier, CNRS, Centre d'étude d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), FRE3689, 34293 Montpellier, France.

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http://dx.doi.org/10.1093/glycob/cwx014DOI Listing
May 2017

Unusual active site location and catalytic apparatus in a glycoside hydrolase family.

Proc Natl Acad Sci U S A 2017 05 10;114(19):4936-4941. Epub 2017 Apr 10.

Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1701130114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441751PMC
May 2017

Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2.

J Struct Biol 2017 03 24;197(3):227-235. Epub 2016 Nov 24.

CNRS, Aix Marseille Univ, AFMB, Marseille, France; INRA, USC 1408, AFMB, Marseille, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10478477163024
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http://dx.doi.org/10.1016/j.jsb.2016.11.004DOI Listing
March 2017

Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.

Appl Microbiol Biotechnol 2017 Mar 12;101(6):2603-2618. Epub 2017 Jan 12.

Biomass Science and Conversion Technologies, Sandia National Laboratories, 7011 East Avenue, Livermore, CA, 94551, USA.

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http://dx.doi.org/10.1007/s00253-017-8091-1DOI Listing
March 2017

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Authors:
Ronald P de Vries Robert Riley Ad Wiebenga Guillermo Aguilar-Osorio Sotiris Amillis Cristiane Akemi Uchima Gregor Anderluh Mojtaba Asadollahi Marion Askin Kerrie Barry Evy Battaglia Özgür Bayram Tiziano Benocci Susanna A Braus-Stromeyer Camila Caldana David Cánovas Gustavo C Cerqueira Fusheng Chen Wanping Chen Cindy Choi Alicia Clum Renato Augusto Corrêa Dos Santos André Ricardo de Lima Damásio George Diallinas Tamás Emri Erzsébet Fekete Michel Flipphi Susanne Freyberg Antonia Gallo Christos Gournas Rob Habgood Matthieu Hainaut María Laura Harispe Bernard Henrissat Kristiina S Hildén Ryan Hope Abeer Hossain Eugenia Karabika Levente Karaffa Zsolt Karányi Nada Kraševec Alan Kuo Harald Kusch Kurt LaButti Ellen L Lagendijk Alla Lapidus Anthony Levasseur Erika Lindquist Anna Lipzen Antonio F Logrieco Andrew MacCabe Miia R Mäkelä Iran Malavazi Petter Melin Vera Meyer Natalia Mielnichuk Márton Miskei Ákos P Molnár Giuseppina Mulé Chew Yee Ngan Margarita Orejas Erzsébet Orosz Jean Paul Ouedraogo Karin M Overkamp Hee-Soo Park Giancarlo Perrone Francois Piumi Peter J Punt Arthur F J Ram Ana Ramón Stefan Rauscher Eric Record Diego Mauricio Riaño-Pachón Vincent Robert Julian Röhrig Roberto Ruller Asaf Salamov Nadhira S Salih Rob A Samson Erzsébet Sándor Manuel Sanguinetti Tabea Schütze Kristina Sepčić Ekaterina Shelest Gavin Sherlock Vicky Sophianopoulou Fabio M Squina Hui Sun Antonia Susca Richard B Todd Adrian Tsang Shiela E Unkles Nathalie van de Wiele Diana van Rossen-Uffink Juliana Velasco de Castro Oliveira Tammi C Vesth Jaap Visser Jae-Hyuk Yu Miaomiao Zhou Mikael R Andersen David B Archer Scott E Baker Isabelle Benoit Axel A Brakhage Gerhard H Braus Reinhard Fischer Jens C Frisvad Gustavo H Goldman Jos Houbraken Berl Oakley István Pócsi Claudio Scazzocchio Bernhard Seiboth Patricia A vanKuyk Jennifer Wortman Paul S Dyer Igor V Grigoriev

Genome Biol 2017 02 14;18(1):28. Epub 2017 Feb 14.

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.

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http://dx.doi.org/10.1186/s13059-017-1151-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5307856PMC
February 2017

Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses.

Sci Rep 2017 02 15;7:42623. Epub 2017 Feb 15.

Department of Chemical Sciences, University of Naples "Federico II", Complesso Universitario Monte S. Angelo, via Cintia, 4 80126 Naples, Italy.

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http://dx.doi.org/10.1038/srep42623DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5309792PMC
February 2017