Publications by authors named "Benno Schwikowski"

42Publications

Bystander IFN-γ activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment.

Nat Cancer 2020 Mar 9;1(3):302-314. Epub 2020 Mar 9.

Dynamics of Immune Responses Unit, Equipe Labellisée Ligue Contre le Cancer, Institut Pasteur, INSERM U1223, 75015 Paris, France.

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March 2020

Network module identification-A widespread theoretical bias and best practices.

Methods 2018 01 21;132:19-25. Epub 2017 Sep 21.

Systems Biology Lab, Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, Paris, France. Electronic address:

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January 2018

Common and phylogenetically widespread coding for peptides by bacterial small RNAs.

BMC Genomics 2017 07 21;18(1):553. Epub 2017 Jul 21.

Systems Biology Laboratory, Department of Genomes and Genetics, Institut Pasteur, Paris, France.

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July 2017

Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection.

Infect Immun 2015 Sep 29;83(9):3624-37. Epub 2015 Jun 29.

Research Unit Dynamics of Host-Pathogen Interactions, Institut Pasteur, Paris, France

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September 2015

Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis.

BMC Genet 2015 Feb 6;16:11. Epub 2015 Feb 6.

Department of Genomes and Genetics, Institut Pasteur, Functional Genetics of Infectious Diseases Unit, Paris, 75015, France.

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February 2015

The Cyni framework for network inference in Cytoscape.

Bioinformatics 2015 May 18;31(9):1499-501. Epub 2014 Dec 18.

Systems Biology Lab, Institut Pasteur, 75724 Paris Cedex 15, France and Department of Systems Biology, Columbia University, New York, NY 10032, USA.

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May 2015

Analysis of time-resolved gene expression measurements across individuals.

PLoS One 2013 9;8(12):e82340. Epub 2013 Dec 9.

Systems Biology Lab, Department of Genomes and Genetics, Institut Pasteur, Paris, France.

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October 2014

TLM-Quant: an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells.

PLoS One 2013 17;8(7):e68696. Epub 2013 Jul 17.

Department of Medical Microbiology, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.

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March 2014