Benjamin T Porebski

Benjamin T Porebski

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Benjamin T Porebski

Benjamin T Porebski

Publications by authors named "Benjamin T Porebski"

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23Publications

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Reactive centre loop dynamics and serpin specificity.

Sci Rep 2019 Mar 7;9(1):3870. Epub 2019 Mar 7.

Biomedicine Discovery Institute, Department of Biochemistry and Molecular Biology, Monash University, Victoria, 3800, Australia.

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http://dx.doi.org/10.1038/s41598-019-40432-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405850PMC
March 2019

Mapping the Pathway and Dynamics of Bestatin Inhibition of the Plasmodium falciparum M1 Aminopeptidase PfA-M1.

ChemMedChem 2018 12 9;13(23):2504-2513. Epub 2018 Nov 9.

Infection and Immunity Program, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, 3800, Australia.

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http://dx.doi.org/10.1002/cmdc.201800563DOI Listing
December 2018

Structural Capacitance in Protein Evolution and Human Diseases.

J Mol Biol 2018 09 3;430(18 Pt B):3200-3217. Epub 2018 Jul 3.

Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2018.06.051DOI Listing
September 2018

Generation of AMBER force field parameters for zinc centres of M1 and M17 family aminopeptidases.

J Biomol Struct Dyn 2018 Aug 28;36(10):2595-2604. Epub 2017 Aug 28.

a Infection and Immunity Program, Department of Microbiology, Biomedicine Discovery Institute , Monash University , Clayton , Victoria 3800 , Australia.

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http://dx.doi.org/10.1080/07391102.2017.1364669DOI Listing
August 2018

Key determinants of selective binding and activation by the monocyte chemoattractant proteins at the chemokine receptor CCR2.

Sci Signal 2017 May 23;10(480). Epub 2017 May 23.

Infection and Immunity Program, Monash Biomedicine Discovery Institute, and Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3800, Australia.

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http://stke.sciencemag.org/lookup/doi/10.1126/scisignal.aai8
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http://dx.doi.org/10.1126/scisignal.aai8529DOI Listing
May 2017

Structural reconstruction of protein ancestry.

Proc Natl Acad Sci U S A 2017 04 29;114(15):3897-3902. Epub 2017 Mar 29.

Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia;

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http://dx.doi.org/10.1073/pnas.1613477114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5393204PMC
April 2017

Circumventing the stability-function trade-off in an engineered FN3 domain.

Protein Eng Des Sel 2016 Nov;29(11):541-550

Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia.

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http://dx.doi.org/10.1093/protein/gzw046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5081044PMC
November 2016

Direct and indirect mechanisms of KLK4 inhibition revealed by structure and dynamics.

Sci Rep 2016 10 21;6:35385. Epub 2016 Oct 21.

Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia.

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http://dx.doi.org/10.1038/srep35385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073354PMC
October 2016

Consensus protein design.

Protein Eng Des Sel 2016 07 5;29(7):245-51. Epub 2016 Jun 5.

Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Clayton, Victoria 3800, Australia

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http://dx.doi.org/10.1093/protein/gzw015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4917058PMC
July 2016

Solution structure of a soluble fragment derived from a membrane protein by shotgun proteolysis.

Protein Eng Des Sel 2015 Oct 15;28(10):445-50. Epub 2015 Apr 15.

Department of Immunology, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst, Sydney, NSW 2010, Australia Faculty of Medicine, St Vincent's Clinical School, The University of New South Wales, Darlinghurst, Sydney, NSW 2010, Australia

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http://dx.doi.org/10.1093/protein/gzv021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661788PMC
October 2015

Structural and dynamic properties that govern the stability of an engineered fibronectin type III domain.

Protein Eng Des Sel 2015 Mar;28(3):67-78

Department of Biochemistry and Molecular Biology, Faculty of Medicine, School of Biomedical Sciences, Monash University, Clayton, VIC 3800, Australia

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http://dx.doi.org/10.1093/protein/gzv002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330816PMC
March 2015

A redundant role of human thyroid peroxidase propeptide for cellular, enzymatic, and immunological activity.

Thyroid 2014 Feb 26;24(2):371-82. Epub 2013 Sep 26.

1 Department of Biochemistry and Molecular Biology, Medical Center of Postgraduate Education , Warsaw, Poland .

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http://dx.doi.org/10.1089/thy.2013.0127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926150PMC
February 2014

Interactive visualization tools for the structural biologist.

J Appl Crystallogr 2013 Oct 3;46(Pt 5):1518-1520. Epub 2013 Aug 3.

Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3800, Australia.

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http://dx.doi.org/10.1107/S0021889813017858DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3778324PMC
October 2013

Epitope flexibility and dynamic footprint revealed by molecular dynamics of a pMHC-TCR complex.

PLoS Comput Biol 2012 8;8(3):e1002404. Epub 2012 Mar 8.

Department of Biochemistry and Molecular Biology, Monash University, Victoria, Australia.

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http://dx.doi.org/10.1371/journal.pcbi.1002404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3297556PMC
June 2012