Publications by authors named "Benjamin F Matthews"

43Publications

Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean.

BMC Genomics 2017 Sep 5;18(1):688. Epub 2017 Sep 5.

USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville Agriculture Research Center, Beltsville, MD, 20705, USA.

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http://dx.doi.org/10.1186/s12864-017-4075-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5584002PMC
September 2017

SoyProLow: A protein database enriched in low abundant soybean proteins.

Bioinformation 2014 30;10(9):599-601. Epub 2014 Sep 30.

USDA-ARS, Soybean Genomics and Improvement Laboratory, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.6026/97320630010599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4209371PMC
October 2014

SCNProDB: A database for the identification of soybean cyst nematode proteins.

Bioinformation 2014 30;10(6):387-9. Epub 2014 Jun 30.

USDA-ARS, Soybean Genomics and Improvement Laboratory, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.6026/97320630010387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110433PMC
August 2014

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks.

Plant Physiol 2014 Jul 14;165(3):1062-1075. Epub 2014 May 14.

Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20817 (C.A.H., C.K., A.G., Z.L.);Department of Computer and Information Sciences, Towson University, Towson, Maryland 21252 (O.D., N.A.); andSoybean Genomics and Improvement (B.F.M.), and Genetic Improvement of Fruits and Vegetables (J.S.), United States Department of Agriculture-Agricultural Research Service, Beltsville, Maryland 20705

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http://dx.doi.org/10.1104/pp.114.237529DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4081322PMC
July 2014

Arabidopsis genes, AtNPR1, AtTGA2 and AtPR-5, confer partial resistance to soybean cyst nematode (Heterodera glycines) when overexpressed in transgenic soybean roots.

BMC Plant Biol 2014 Apr 16;14:96. Epub 2014 Apr 16.

United States Department of Agriculture, Agricultural Research Service, Soybean Genomics and Improvement Laboratory, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1186/1471-2229-14-96DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4021311PMC
April 2014

Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing.

BMC Genomics 2013 Sep 11;14:614. Epub 2013 Sep 11.

Soybean Genomics & Improvement Laboratory, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1186/1471-2164-14-614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847679PMC
September 2013

Ectopic expression of AtPAD4 broadens resistance of soybean to soybean cyst and root-knot nematodes.

BMC Plant Biol 2013 Apr 25;13:67. Epub 2013 Apr 25.

USDA-ARS, Soybean Genomic and Improvement Laboratory, 10300 Baltimore Ave, Bldg 006, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1186/1471-2229-13-67DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648381PMC
April 2013

Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites.

Plant Methods 2013 Apr 11;9(1):12. Epub 2013 Apr 11.

Department of Bioinformatics and Computational Biology, George Mason University, Manassas, Virginia, USA.

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http://plantmethods.biomedcentral.com/articles/10.1186/1746-
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http://dx.doi.org/10.1186/1746-4811-9-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639912PMC
April 2013

Post-transcriptional gene silencing of the gene encoding aldolase from soybean cyst nematode by transformed soybean roots.

Exp Parasitol 2013 Jun 27;134(2):266-74. Epub 2013 Mar 27.

USDA-ARS, Soybean Genomic and Improvement Laboratory, 10300 Baltimore Ave., Beltsville, MD 20705, United States.

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http://dx.doi.org/10.1016/j.exppara.2013.03.009DOI Listing
June 2013

Engineered resistance and hypersusceptibility through functional metabolic studies of 100 genes in soybean to its major pathogen, the soybean cyst nematode.

Planta 2013 May 7;237(5):1337-57. Epub 2013 Feb 7.

Soybean Genomics and Improvement Laboratory, United States Department of Agriculture, Agricultural Research Service, 10300 Baltimore Ave, Bldg 006, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1007/s00425-013-1840-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634990PMC
May 2013

RKN Lethal DB: A database for the identification of Root Knot Nematode (Meloidogyne spp.) candidate lethal genes.

Bioinformation 2012 1;8(19):950-2. Epub 2012 Oct 1.

Department of Computer and Information Sciences, Towson University, 8000 York Road, Towson, MD 21252, USA.

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http://dx.doi.org/10.6026/97320630008950DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488838PMC
November 2012

The expression of a naturally occurring, truncated allele of an α-SNAP gene suppresses plant parasitic nematode infection.

Plant Mol Biol 2012 Sep 12;80(2):131-55. Epub 2012 Jun 12.

Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1007/s11103-012-9932-zDOI Listing
September 2012

Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines.

Proteomics 2011 Dec 23;11(24):4742-6. Epub 2011 Nov 23.

USDA-ARS, Soybean Genomics and Improvement Laboratory, PSI, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1002/pmic.201100220DOI Listing
December 2011

Mapping cell fate decisions that occur during soybean defense responses.

Plant Mol Biol 2011 Nov 11;77(4-5):513-28. Epub 2011 Oct 11.

Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1007/s11103-011-9828-3DOI Listing
November 2011

Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.).

J Biosci 2011 Mar;36(1):139-51

Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-857, Republic of Korea.

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http://dx.doi.org/10.1007/s12038-011-9002-8DOI Listing
March 2011

Post-transcriptional gene silencing of root-knot nematode in transformed soybean roots.

Exp Parasitol 2011 Jan 3;127(1):90-9. Epub 2010 Jul 3.

United States Department of Agriculture, Plant Sciences Institute, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1016/j.exppara.2010.06.037DOI Listing
January 2011

An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets.

BMC Res Notes 2010 Jul 2;3:183. Epub 2010 Jul 2.

Jess and Mildred Fisher College of Science and Mathematics, Department of Computer and Information Sciences, Towson University, 7800 York Road, Towson, Maryland, 21252, USA.

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http://dx.doi.org/10.1186/1756-0500-3-183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2908109PMC
July 2010

Syncytium gene expression in Glycine max([PI 88788]) roots undergoing a resistant reaction to the parasitic nematode Heterodera glycines.

Plant Physiol Biochem 2010 Feb-Mar;48(2-3):176-93. Epub 2010 Jan 4.

Department of Biological Sciences, Harned Hall, Mississippi State University, Mississippi State, MS, 39762, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S098194280900244
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http://dx.doi.org/10.1016/j.plaphy.2009.12.003DOI Listing
September 2010

A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode).

Plant Mol Biol 2009 Dec 29;71(6):525-67. Epub 2009 Sep 29.

Department of Biological Sciences, Mississippi State University, Harned Hall, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1007/s11103-009-9539-1DOI Listing
December 2009

Emerging approaches to broaden resistance of soybean to soybean cyst nematode as supported by gene expression studies.

Plant Physiol 2009 Nov 12;151(3):1017-22. Epub 2009 Aug 12.

Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi 39762, USA.

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.109.144006
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http://dx.doi.org/10.1104/pp.109.144006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773110PMC
November 2009

Protease inhibitor expression in soybean roots exhibiting susceptible and resistant interactions with soybean cyst nematode.

J Nematol 2008 Jun;40(2):138-46

USDA-ARS, Soybean Genomics and Improvement Laboratory, 10300 Baltimore Ave, Building 006, Beltsville, MD 20705. Desert Research Center, El Mataria, Cairo, Egypt.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2586541PMC
June 2008

The use of laser capture microdissection to study the infection of Glycine max (soybean) by Heterodera glycines (soybean cyst nematode).

Plant Signal Behav 2008 Feb;3(2):105-7

United States Department of Agriculture; Soybean Genomics and Improvement Laboratory; Beltsville, Maryland USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633993PMC
http://dx.doi.org/10.4161/psb.3.2.4962DOI Listing
February 2008

Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines).

Planta 2007 Nov 1;226(6):1389-409. Epub 2007 Aug 1.

United States Department of Agriculture, Soybean Genomics and Improvement Laboratory, Bldg. 006, Rm. 118, 10300 Baltimore Ave., Beltsville, MD 20705-2350, USA.

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http://dx.doi.org/10.1007/s00425-007-0578-zDOI Listing
November 2007

A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection.

Planta 2007 Nov 25;226(6):1423-47. Epub 2007 Jul 25.

United States Department of Agriculture, Soybean Genomics and Improvement Laboratory, 10300 Baltimore Ave. Bldg 006, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1007/s00425-007-0581-4DOI Listing
November 2007

BBGD: an online database for blueberry genomic data.

BMC Plant Biol 2007 Jan 30;7. Epub 2007 Jan 30.

Department of computer and information sciences, Towson University, 7800 York Road, Towson, Maryland, 21252, USA.

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http://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-
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http://dx.doi.org/10.1186/1471-2229-7-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1796881PMC
January 2007

Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max.

Gene Regul Syst Bio 2007 Jun 5;1:17-33. Epub 2007 Jun 5.

United States Department of Agriculture, Soybean Genomics and Improvement Laboratory, Bldg 006, Beltsville, MD 20705, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759149PMC
June 2007

Identification of Heterodera glycines (soybean cyst nematode [SCN]) cDNA sequences with high identity to those of Caenorhabditis elegans having lethal mutant or RNAi phenotypes.

Exp Parasitol 2007 Mar 18;115(3):247-58. Epub 2006 Oct 18.

United States Department of Agriculture, ARS, Soybean Genomics and Improvement Laboratory, Beltsville, MD 20705-2350, USA.

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http://dx.doi.org/10.1016/j.exppara.2006.09.009DOI Listing
March 2007

Major differences observed in transcript profiles of blueberry during cold acclimation under field and cold room conditions.

Planta 2007 Feb 5;225(3):735-51. Epub 2006 Sep 5.

Fruit Laboratory, USDA/ARS, Henry A. Wallace Beltsville Agricultural Research Center, Bldg. 010A BARC-West, 10300 Baltimore Ave., Beltsville, MD 20705, USA.

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http://link.springer.com/10.1007/s00425-006-0382-1
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http://dx.doi.org/10.1007/s00425-006-0382-1DOI Listing
February 2007

SGMD: the Soybean Genomics and Microarray Database.

Nucleic Acids Res 2004 Jan;32(Database issue):D398-400

Soybean Genomics and Improvement Laboratory, USDA-ARS, Building 006, Room 118, 10300 Baltimore Avenue, Beltsville, MD 20705-2350, USA.

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http://dx.doi.org/10.1093/nar/gkh126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308860PMC
January 2004

Ascaris suum: cDNA microarray analysis of 4th stage larvae (L4) during self-cure from the intestine.

Exp Parasitol 2003 Jul-Aug;104(3-4):113-21

United States Department of Agriculture, Agricultural Research Service, Nutrient Requirements and Functions Laboratory, Beltsville Human Nutrition Research Center, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1016/s0014-4894(03)00139-5DOI Listing
November 2003