Benedict Paten

Benedict Paten

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Benedict Paten

Benedict Paten

Publications by authors named "Benedict Paten"

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Genotyping structural variants in pangenome graphs using the vg toolkit.

Genome Biol 2020 Feb 12;21(1):35. Epub 2020 Feb 12.

UC Santa Cruz Genomics Institute, University of California, Santa Cruz, California, USA.

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http://dx.doi.org/10.1186/s13059-020-1941-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017486PMC
February 2020

Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples.

JCO Clin Cancer Inform 2020 Feb;4:160-170

Computational Genomics Laboratory, University of California, Santa Cruz, Santa Cruz, CA.

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http://dx.doi.org/10.1200/CCI.19.00095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053807PMC
February 2020

Haplotype-aware graph indexes.

Bioinformatics 2020 Jan;36(2):400-407

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, UK.

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http://dx.doi.org/10.1093/bioinformatics/btz575DOI Listing
January 2020

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing.

Genes (Basel) 2020 01 9;11(1). Epub 2020 Jan 9.

Biomedical Research and Environmental Sciences Division, NASA Johnson Space Center, Houston, TX 77058, USA.

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http://dx.doi.org/10.3390/genes11010076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016637PMC
January 2020

Sequence tube maps: making graph genomes intuitive to commuters.

Bioinformatics 2019 Dec;35(24):5318-5320

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btz597DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6954646PMC
December 2019

Haplotype-aware diplotyping from noisy long reads.

Genome Biol 2019 06 3;20(1):116. Epub 2019 Jun 3.

UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, 95064, CA, USA.

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http://dx.doi.org/10.1186/s13059-019-1709-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6547545PMC
June 2019

An average-case sublinear forward algorithm for the haploid Li and Stephens model.

Algorithms Mol Biol 2019 2;14:11. Epub 2019 Apr 2.

2NYU School of Medicine, 550 First Ave, New York, NY 10016 USA.

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https://almob.biomedcentral.com/articles/10.1186/s13015-019-
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http://dx.doi.org/10.1186/s13015-019-0144-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6446408PMC
April 2019

Whole-Genome Alignment and Comparative Annotation.

Annu Rev Anim Biosci 2019 02 31;7:41-64. Epub 2018 Oct 31.

UC Santa Cruz Genomics Institute, University of California, Santa Cruz, California 95064, USA; email:

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http://dx.doi.org/10.1146/annurev-animal-020518-115005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6450745PMC
February 2019

Superbubbles, Ultrabubbles, and Cacti.

J Comput Biol 2018 07 20;25(7):649-663. Epub 2018 Feb 20.

1 UC Santa Cruz Genomics Institute, University of California Santa Cruz , Santa Cruz, California.

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http://www.liebertpub.com/doi/10.1089/cmb.2017.0251
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http://dx.doi.org/10.1089/cmb.2017.0251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6067107PMC
July 2018

Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.

Genome Res 2018 07 8;28(7):1029-1038. Epub 2018 Jun 8.

Genomics Institute, University of California Santa Cruz and Howard Hughes Medical Institute, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1101/gr.233460.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028123PMC
July 2018

Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells.

Genome Res 2018 06 24;28(6):780-788. Epub 2018 May 24.

San Diego Zoo Institute for Conservation Research, Escondido, California 92027, USA.

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http://dx.doi.org/10.1101/gr.227603.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991516PMC
June 2018

Linear assembly of a human centromere on the Y chromosome.

Nat Biotechnol 2018 04 19;36(4):321-323. Epub 2018 Mar 19.

UC Santa Cruz Genomics Institute, University of California, Santa Cruz, California, USA.

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http://dx.doi.org/10.1038/nbt.4109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5886786PMC
April 2018

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

J Biomed Inform 2017 07 10;71:49-57. Epub 2017 May 10.

Department of Pharmacological Sciences, BD2K-LINCS Data Coordination and Integration Center, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1215, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2017.05.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5545976PMC
July 2017

A graph extension of the positional Burrows-Wheeler transform and its applications.

Algorithms Mol Biol 2017 11;12:18. Epub 2017 Jul 11.

Genomics Institute, University of California Santa Cruz, CBSE, 501C Engineering 2, MS: CBSE, 1156 High St., Santa Cruz, CA 95064 USA.

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http://dx.doi.org/10.1186/s13015-017-0109-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5505026PMC
July 2017

Modelling haplotypes with respect to reference cohort variation graphs.

Bioinformatics 2017 Jul;33(14):i118-i123

Baskin School of Engineering, UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.

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https://academic.oup.com/bioinformatics/article/33/14/i118/3
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http://dx.doi.org/10.1093/bioinformatics/btx236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870562PMC
July 2017

Genome graphs and the evolution of genome inference.

Genome Res 2017 05 30;27(5):665-676. Epub 2017 Mar 30.

Wellcome Trust Sanger Institute, Cambridge CB10 1SA, United Kingdom.

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http://dx.doi.org/10.1101/gr.214155.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411762PMC
May 2017

Mapping DNA methylation with high-throughput nanopore sequencing.

Nat Methods 2017 Apr 20;14(4):411-413. Epub 2017 Feb 20.

Department of Biomolecular Engineering and Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, USA.

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http://dx.doi.org/10.1038/nmeth.4189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704956PMC
April 2017

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.

Genome Biol 2016 12 13;17(1):256. Epub 2016 Dec 13.

UC Santa Cruz Genomics Institute and Department of Biomolecular Engineering, University of California, Santa Cruz, CA, 95064, USA.

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http://dx.doi.org/10.1186/s13059-016-1122-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154158PMC
December 2016

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.

Genome Biol 2016 11 25;17(1):239. Epub 2016 Nov 25.

UC Santa Cruz Genomics Institute and Department of Biomolecular Engineering, University of California, Santa Cruz, CA, 95064, USA.

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http://dx.doi.org/10.1186/s13059-016-1103-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124260PMC
November 2016

Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.

BMC Bioinformatics 2016 Sep 29;17(1):400. Epub 2016 Sep 29.

Center for Biomolecular Sciences and Engineering, CBSE/ITI, UC Santa Cruz, 1156 High St, Santa Cruz, 95064, CA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5043639PMC
http://dx.doi.org/10.1186/s12859-016-1258-4DOI Listing
September 2016

Long-read sequence assembly of the gorilla genome.

Science 2016 Apr;352(6281):aae0344

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1126/science.aae0344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920363PMC
April 2016

The Genome 10K Project: a way forward.

Annu Rev Anim Biosci 2015 ;3:57-111

Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russian Federation; email:

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http://dx.doi.org/10.1146/annurev-animal-090414-014900DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5837290PMC
January 2016

Canonical, stable, general mapping using context schemes.

Bioinformatics 2015 Nov 27;31(22):3569-76. Epub 2015 Jul 27.

UC Santa Cruz Genomics Institute, 1156 High Street, Santa Cruz, CA 95064 and.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv435DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4757953PMC
November 2015

Building a pan-genome reference for a population.

J Comput Biol 2015 May 7;22(5):387-401. Epub 2015 Jan 7.

1 Center for Biomolecular Science and Engineering, University of California , Santa Cruz, California.

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http://dx.doi.org/10.1089/cmb.2014.0146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424974PMC
May 2015

Improved data analysis for the MinION nanopore sequencer.

Nat Methods 2015 Apr 16;12(4):351-6. Epub 2015 Feb 16.

1] UC Santa Cruz Genomics Institute, Santa Cruz, California, USA. [2] Department of Biomolecular Engineering, University of California, Santa Cruz, California, USA.

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http://dx.doi.org/10.1038/nmeth.3290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907500PMC
April 2015

Comparative assembly hubs: web-accessible browsers for comparative genomics.

Bioinformatics 2014 Dec 18;30(23):3293-301. Epub 2014 Aug 18.

Center for Biomolecular Sciences and Engineering, CBSE/ITI, UC Santa Cruz, 1156 High St, Santa Cruz, CA 95064, USA and Howard Hughes Medical Institute, Center for Biomolecular Science and Engineering, UCSC, 1156 High Street, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296145PMC
December 2014

Alignathon: a competitive assessment of whole-genome alignment methods.

Genome Res 2014 Dec 1;24(12):2077-89. Epub 2014 Oct 1.

Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA;

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http://dx.doi.org/10.1101/gr.174920.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248324PMC
December 2014

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.

Nature 2014 Dec 28;516(7530):242-5. Epub 2014 Sep 28.

1] Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA [2] Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1038/nature13760DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4268317PMC
December 2014

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Science 2014 Dec 11;346(6215):1254449. Epub 2014 Dec 11.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA. Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA. Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA.

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http://jarvislab.net/wp-content/uploads/2012/02/Green-et-al-
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http://www.sciencemag.org/cgi/doi/10.1126/science.1254449
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http://dx.doi.org/10.1126/science.1254449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4386873PMC
December 2014

Ragout-a reference-assisted assembly tool for bacterial genomes.

Bioinformatics 2014 Jun;30(12):i302-9

St. Petersburg University of the Russian Academy of Sciences, Bioinformatics Institute, St. Petersburg, Russia, UCSC, 1156 High Street, Santa Cruz, CA and Department of Computer Science and Engineering, UCSD, 9500 Gilman Drive, La Jolla, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058940PMC
June 2014

A unifying model of genome evolution under parsimony.

BMC Bioinformatics 2014 Jun 19;15:206. Epub 2014 Jun 19.

University of California, Santa Cruz, 1156 High St, 95064 Santa Cruz, USA.

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http://dx.doi.org/10.1186/1471-2105-15-206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4082375PMC
June 2014

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

Bioinformatics 2014 Apr 13;30(7):1003-5. Epub 2013 Nov 13.

Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA and Department of Genetics, Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967101PMC
April 2014

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

HAL: a hierarchical format for storing and analyzing multiple genome alignments.

Bioinformatics 2013 May 16;29(10):1341-2. Epub 2013 Mar 16.

Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz CA 95064, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3654707PMC
May 2013

Accurate reconstruction of insertion-deletion histories by statistical phylogenetics.

PLoS One 2012 20;7(4):e34572. Epub 2012 Apr 20.

University of California Berkeley and University of California San Francisco Graduate Program in Bioengineering, University of California, Berkeley, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034572PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335033PMC
August 2012

Cactus: Algorithms for genome multiple sequence alignment.

Genome Res 2011 Sep 10;21(9):1512-28. Epub 2011 Jun 10.

Center for Biomolecular Science and Engineering, University of California-Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1101/gr.123356.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166836PMC
September 2011

Cactus graphs for genome comparisons.

J Comput Biol 2011 Mar;18(3):469-81

Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California, USA.

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http://dx.doi.org/10.1089/cmb.2010.0252DOI Listing
March 2011

Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation.

Nat Protoc 2010 Feb 4;5(2):323-34. Epub 2010 Feb 4.

Developmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1038/nprot.2009.158DOI Listing
February 2010

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.

Bioinformatics 2009 Feb 4;25(3):295-301. Epub 2008 Dec 4.

Department of Engineering, University of California, Santa Cruz CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn630DOI Listing
February 2009

Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs.

Genome Res 2008 Nov 10;18(11):1814-28. Epub 2008 Oct 10.

Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1101/gr.076554.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577869PMC
November 2008

Genome-wide nucleotide-level mammalian ancestor reconstruction.

Genome Res 2008 Nov 10;18(11):1829-43. Epub 2008 Oct 10.

Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1101/gr.076521.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577868PMC
November 2008

Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation.

Nat Methods 2007 Jul 24;4(7):563-5. Epub 2007 Jun 24.

Developmental Biology Unit, EMBL-Heidelberg, Heidelberg, Germany.

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http://dx.doi.org/10.1038/nmeth1061DOI Listing
July 2007

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Genome Res 2007 Jun;17(6):760-74

Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://mendel.stanford.edu/sidowlab/pdfs/2007EncodeGR.pdf
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http://www.genome.org/cgi/doi/10.1101/gr.6034307
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http://dx.doi.org/10.1101/gr.6034307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891336PMC
June 2007

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007