Ben J Woodcroft

Ben J Woodcroft

UNVERIFIED PROFILE

Are you Ben J Woodcroft?   Register this Author

Register author
Ben J Woodcroft

Ben J Woodcroft

Publications by authors named "Ben J Woodcroft"

Are you Ben J Woodcroft?   Register this Author

30Publications

958Reads

34Profile Views

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.

ISME J 2019 05 16;13(5):1269-1279. Epub 2019 Jan 16.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41396-018-0343-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474303PMC
May 2019

An evolving view of methane metabolism in the Archaea.

Nat Rev Microbiol 2019 04 21;17(4):219-232. Epub 2019 Jan 21.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41579-018-0136-7DOI Listing
April 2019

Methanotrophy across a natural permafrost thaw environment.

ISME J 2018 10 28;12(10):2544-2558. Epub 2018 Jun 28.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, QLD, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41396-018-0065-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155033PMC
October 2018

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes.

Nucleic Acids Res 2018 06;46(10):e59

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia 4072, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gky174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007438PMC
June 2018

Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Nat Microbiol 2018 Feb;3(2):253

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41564-017-0083-5DOI Listing
February 2018

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Nat Microbiol 2017 Nov 11;2(11):1533-1542. Epub 2017 Sep 11.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Queensland, 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41564-017-0012-7DOI Listing
November 2017

The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials.

PLoS One 2016 14;11(7):e0159128. Epub 2016 Jul 14.

School of Biological Sciences, The University of Queensland, Brisbane, Queensland, Australia.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0159128PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944945PMC
July 2017

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

PeerJ 2016 22;4:e2486. Epub 2016 Sep 22.

Australian Centre for Ecogenomics/School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, QLD, Australia; Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD, Australia.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036114PMC
http://dx.doi.org/10.7717/peerj.2486DOI Listing
October 2016

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota.

Nat Microbiol 2016 Oct 3;1:16170. Epub 2016 Oct 3.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Queensland 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmicrobiol.2016.170DOI Listing
October 2016

OrfM: a fast open reading frame predictor for metagenomic data.

Bioinformatics 2016 09 3;32(17):2702-3. Epub 2016 May 3.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, QLD 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btw241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013905PMC
September 2016

Discovery of a novel methanogen prevalent in thawing permafrost.

Nat Commun 2014 ;5:3212

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ncomms4212DOI Listing
October 2015

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus.

PeerJ 2015 21;3:e968. Epub 2015 May 21.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland , St Lucia, QLD , Australia ; Institute for Molecular Bioscience, The University of Queensland , St Lucia, QLD , Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4451040PMC
June 2015

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

PeerJ 2014 30;2:e603. Epub 2014 Sep 30.

Australian Center for Ecogenomics (ACE), School of Chemistry and Molecular Biosciences, The University of Queensland , St Lucia, QLD , Australia ; Advanced Water Management Center (AWMC), The University of Queensland , St Lucia, QLD , Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183954PMC
October 2014

Methane dynamics regulated by microbial community response to permafrost thaw.

Nature 2014 Oct;514(7523):478-81

Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13798DOI Listing
October 2014

Determination of protein subcellular localization in apicomplexan parasites.

Trends Parasitol 2012 Dec 17;28(12):546-54. Epub 2012 Sep 17.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, 3010, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pt.2012.08.008DOI Listing
December 2012

Marked changes in neuropeptide expression accompany broadcast spawnings in the gastropod Haliotis asinina.

Front Zool 2012 May 9;9(1). Epub 2012 May 9.

Centre for Marine Science, School of Biological Sciences, University of Queensland, Brisbane, Queensland, 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1742-9994-9-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3434067PMC
May 2012

Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes.

BMC Genomics 2010 Apr 3;11:222. Epub 2010 Apr 3.

Department of Biochemistry & Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Victoria, 3010, Australia.

View Article

Download full-text PDF

Source
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
Publisher Site
http://dx.doi.org/10.1186/1471-2164-11-222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867826PMC
April 2010

Automated organelle-based colocalization in whole-cell imaging.

Cytometry A 2009 Nov;75(11):941-50

Institute of Molecular Bioscience, The University of Queensland, Brisbane, Queensland 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cyto.a.20786DOI Listing
November 2009

REX1 and Pf62: are they one and the same?

Parasitol Res 2009 Apr;104(5):967-8

Malaria Biology Laboratory, Queensland Institute of Medical Research, Herston, Brisbane, Australia.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00436-009-1382-4
Publisher Site
http://dx.doi.org/10.1007/s00436-009-1382-4DOI Listing
April 2009

Widespread transcriptional changes pre-empt the critical pelagic-benthic transition in the vetigastropod Haliotis asinina.

Mol Ecol 2009 Mar 29;18(5):1006-25. Epub 2009 Jan 29.

School of Integrative Biology, The University of Queensland, Saint Lucia Campus, Brisbane, Qld 4072, Australia.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/j.1365-294X.2008.04078.x
Publisher Site
http://dx.doi.org/10.1111/j.1365-294X.2008.04078.xDOI Listing
March 2009

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.

Nature 2008 Oct 1;455(7217):1193-7. Epub 2008 Oct 1.

Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature07415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3837422PMC
October 2008

Does the high gene density in the sponge NK homeobox gene cluster reflect limited regulatory capacity?

Biol Bull 2008 Jun;214(3):205-17

School of Integrative Biology, University of Queensland, Brisbane QLD 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2307/25470664DOI Listing
June 2008