Belinda Giardine

Belinda Giardine

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Belinda Giardine

Belinda Giardine

Publications by authors named "Belinda Giardine"

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37Publications

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Interrogating Histone Acetylation and BRD4 as Mitotic Bookmarks of Transcription.

Cell Rep 2019 Apr;27(2):400-415.e5

Division of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.03.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664437PMC
April 2019

Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.

Mol Cell 2019 02 13;73(3):519-532.e4. Epub 2018 Dec 13.

Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6368450PMC
February 2019

The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries.

Mol Cell 2017 Apr;66(1):102-116.e7

Division of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.02.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5393350PMC
April 2017

A hyperactive transcriptional state marks genome reactivation at the mitosis-G1 transition.

Genes Dev 2016 06;30(12):1423-39

Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1101/gad.280859.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926865PMC
June 2016

Dynamics of GATA1 binding and expression response in a GATA1-induced erythroid differentiation system.

Genom Data 2015 Jun;4:1-7

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA ; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S22135960150001
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http://dx.doi.org/10.1016/j.gdata.2015.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338950PMC
June 2015

Functions of BET proteins in erythroid gene expression.

Blood 2015 Apr 18;125(18):2825-34. Epub 2015 Feb 18.

Division of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA; Perelman School of Medicine, University of Pennsylvania, Philadelphia PA; and.

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http://dx.doi.org/10.1182/blood-2014-10-607309DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424630PMC
April 2015

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.

Nucleic Acids Res 2014 Jan 16;42(Database issue):D1063-9. Epub 2013 Oct 16.

The Pennsylvania State University, Center for Comparative Genomics and Bioinformatics, University Park, PA, USA, Department of Applied Biomedical Science, Faculty of Health Sciences, University of Malta, Msida, Malta, MGC-Department of Cell Biology and Genetics, Erasmus MC, Faculty of Medicine and Health Sciences, Rotterdam, The Netherlands, Department of Computer Engineering and Informatics, University of Patras, Faculty of Engineering, Patras, Greece, Department of Pharmacy, University of Patras, School of Health Sciences, Patras, Greece, Department of Medical Genetics, Laboratory of Cytogenetics, Institute of Biology, Nantes, France, Hôpital Edouard Herriot, Unité de Pathologie Moléculaire du Globule Rouge, Lyon, France, Department of Computer and Informatics Engineering, Technological Educational Institute of Western Greece, Patras, Greece, INSERM U955, CHU Henri Mondor, Creteil, France and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.

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http://nar.oxfordjournals.org/content/early/2013/10/16/nar.g
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkt911
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http://dx.doi.org/10.1093/nar/gkt911DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964999PMC
January 2014

Galaxy tools to study genome diversity.

Gigascience 2013 Dec 30;2(1):17. Epub 2013 Dec 30.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/2047-217X-2-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877877PMC
December 2013

Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome.

Curr Protoc Bioinformatics 2012 Sep;Chapter 15:Unit15.2

Pennsylvania State University, University Park, PA, USA.

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http://dx.doi.org/10.1002/0471250953.bi1502s39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548453PMC
September 2012

The value of data.

Nat Genet 2011 Mar 29;43(4):281-3. Epub 2011 Mar 29.

Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.

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http://www.nature.com/doifinder/10.1038/ng0411-281
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http://dx.doi.org/10.1038/ng0411-281DOI Listing
March 2011

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update.

Hum Mutat 2007 Feb;28(2):206

The Pennsylvania State University, Center for Comparative Genomics and Bioinformatics, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1002/humu.9479DOI Listing
February 2007

Galaxy: a platform for interactive large-scale genome analysis.

Genome Res 2005 Oct 16;15(10):1451-5. Epub 2005 Sep 16.

Center for Comparative Genomics and Bioinformatics, Huck Institutes for Life Sciences, Penn State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1101/gr.4086505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1240089PMC
October 2005

Mulan: multiple-sequence local alignment and visualization for studying function and evolution.

Genome Res 2005 Jan 8;15(1):184-94. Epub 2004 Dec 8.

Energy, Environment, Biology and Institutional Computing, Lawrence Livermore National Laboratory, Livermore, California 94550, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.3007205
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http://dx.doi.org/10.1101/gr.3007205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540288PMC
January 2005

Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.

Nucleic Acids Res 2004 Jan;32(Database issue):D537-41

MGC-Department of Cell Biology and Genetics, Erasmus MC, Faculty of Medicine and Health Sciences, PO Box 1738, 3000 DR, Rotterdam, The Netherlands.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkh006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308741PMC
January 2004

GALA, a database for genomic sequence alignments and annotations.

Genome Res 2003 Apr;13(4):732-41

Department of Computer Science and Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1101/gr.603103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430176PMC
April 2003

HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server.

Hum Mutat 2002 Mar;19(3):225-33

Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.

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http://doi.wiley.com/10.1002/humu.10044
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http://dx.doi.org/10.1002/humu.10044DOI Listing
March 2002