Beisi Xu

Beisi Xu

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Beisi Xu

Publications by authors named "Beisi Xu"

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33Publications

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Muscle-derived Dpp regulates feeding initiation via endocrine modulation of brain dopamine biosynthesis.

Genes Dev 2020 Jan 12;34(1-2):37-52. Epub 2019 Dec 12.

Division of Developmental Biology, Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.

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http://dx.doi.org/10.1101/gad.329110.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938663PMC
January 2020

Matters of life and death: How estrogen and estrogen receptor binding to the immunoglobulin heavy chain locus may influence outcomes of infection, allergy, and autoimmune disease.

Cell Immunol 2019 Dec 25;346:103996. Epub 2019 Oct 25.

Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cellimm.2019.103996DOI Listing
December 2019

Nucleome Dynamics during Retinal Development.

Neuron 2019 Nov 4;104(3):512-528.e11. Epub 2019 Sep 4.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2019.08.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842117PMC
November 2019

Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping.

Nucleic Acids Res 2019 07;47(13):6699-6713

Department of Tumor Cell Biology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.

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http://dx.doi.org/10.1093/nar/gkz462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648894PMC
July 2019

Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1.

Nat Neurosci 2019 03 4;22(3):362-373. Epub 2019 Feb 4.

Department of Developmental Neurobiology and Division of Developmental Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

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http://dx.doi.org/10.1038/s41593-018-0328-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6511450PMC
March 2019

The Hippo Pathway Prevents YAP/TAZ-Driven Hypertranscription and Controls Neural Progenitor Number.

Dev Cell 2018 12 25;47(5):576-591.e8. Epub 2018 Oct 25.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2018.09.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296252PMC
December 2018

Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses.

Cancer Cell 2018 09 23;34(3):411-426.e19. Epub 2018 Aug 23.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, MS 323, Memphis, TN 38105-3678, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38105, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2018.07.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6158019PMC
September 2018

Mouse medulloblastoma driven by CRISPR activation of cellular Myc.

Sci Rep 2018 06 7;8(1):8733. Epub 2018 Jun 7.

Department of Tumor Cell Biology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA.

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http://dx.doi.org/10.1038/s41598-018-24956-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992137PMC
June 2018

Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures.

Cell Rep 2018 03;22(10):2601-2614

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.01.075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872828PMC
March 2018

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.

Neuron 2017 May;94(3):550-568.e10

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA; Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2017.04.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5508517PMC
May 2017

Binding of estrogen receptors to switch sites and regulatory elements in the immunoglobulin heavy chain locus of activated B cells suggests a direct influence of estrogen on antibody expression.

Mol Immunol 2016 09 3;77:97-102. Epub 2016 Aug 3.

Department of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA; Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molimm.2016.07.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010968PMC
September 2016

The glucose-sensing transcription factor MLX promotes myogenesis via myokine signaling.

Genes Dev 2015 Dec 19;29(23):2475-89. Epub 2015 Nov 19.

Department of Developmental Neurobiology, Division of Developmental Biology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA;

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http://dx.doi.org/10.1101/gad.267419.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691951PMC
December 2015

Brg1 coordinates multiple processes during retinogenesis and is a tumor suppressor in retinoblastoma.

Development 2015 Dec;142(23):4092-106

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA

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http://dev.biologists.org/content/develop/142/23/4092.full.p
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http://dev.biologists.org/cgi/doi/10.1242/dev.124800
Publisher Site
http://dx.doi.org/10.1242/dev.124800DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4712833PMC
December 2015

Quantification of Retinogenesis in 3D Cultures Reveals Epigenetic Memory and Higher Efficiency in iPSCs Derived from Rod Photoreceptors.

Cell Stem Cell 2015 Jul;17(1):101-15

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2015.05.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547539PMC
July 2015

Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells.

Genome Biol 2015 Jun 2;16:115. Epub 2015 Jun 2.

Department of Environmental Health Sciences, Laboratory of Human Environmental Epigenomes, Bloomberg School of Public Health, Johns Hopkins University, 615 N. Wolfe Street, Room E7816, Baltimore, MD, 21205, USA.

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http://dx.doi.org/10.1186/s13059-015-0685-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474455PMC
June 2015

Epigenetic dysregulation by nickel through repressive chromatin domain disruption.

Proc Natl Acad Sci U S A 2014 Oct 22;111(40):14631-6. Epub 2014 Sep 22.

Department of Environmental Medicine, New York University School of Medicine, Tuxedo, NY 10987;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1406923111
Publisher Site
http://dx.doi.org/10.1073/pnas.1406923111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4210008PMC
October 2014

A structural-based strategy for recognition of transcription factor binding sites.

PLoS One 2013 8;8(1):e52460. Epub 2013 Jan 8.

Laboratory of Molecular Modeling and Design, Dalian Institute of Chemical Physics, The Chinese Academy of Sciences, Dalian, Liaoning, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0052460PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540023PMC
August 2013

Fast and accurate computation schemes for evaluating vibrational entropy of proteins.

J Comput Chem 2011 Nov 27;32(15):3188-93. Epub 2011 Aug 27.

State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, The Chinese Academy of Sciences, Dalian, China.

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http://dx.doi.org/10.1002/jcc.21900DOI Listing
November 2011

Insight into mechanism of small molecule inhibitors of the MDM2-p53 interaction: molecular dynamics simulation and free energy analysis.

J Mol Graph Model 2011 Sep 13;30:46-53. Epub 2011 Jun 13.

Laboratory of Molecular Modeling and Design, State Kay Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Science, 116011 China.

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http://dx.doi.org/10.1016/j.jmgm.2011.06.003DOI Listing
September 2011

An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles.

Proteins 2009 Aug;76(3):718-30

Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei, Anhui, China.

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http://dx.doi.org/10.1002/prot.22384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2743280PMC
August 2009

Thermodynamic behaviors of polyampholytes at low temperatures.

J Chem Phys 2004 Oct;121(15):7494-500

Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.

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http://dx.doi.org/10.1063/1.1792191DOI Listing
October 2004