Publications by authors named "Beisi Xu"

41Publications

FBXO11-Mediated Proteolysis of BAHD1 Relieves PRC2-dependent Transcriptional Repression in Erythropoiesis.

Authors:
Peng Xu Daniel C Scott Beisi Xu Yu Yao Ruopeng Feng Li Cheng Kalin Mayberry Wenjian Bi Lance E Palmer Moeko T King Hong Wang Yuxin Li Yiping Fan Arno F Alpi Chunliang Li Junmin Peng James Papizan Shondra M Pruett-Miller Ria Spallek Florian Bassermann Yong Cheng Brenda A Schulman Mitchell J Weiss

Blood 2020 Nov 6. Epub 2020 Nov 6.

St. Jude Children's Research Hospital, Memphis, Tennessee, United States.

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November 2020

A predictive signature for oxaliplatin and 5-fluorouracil based chemotherapy in locally advanced gastric cancer.

Authors:
Qinchuan Wang Xiyong Liu Chen Chen Jida Chen Beisi Xu Lini Chen Jichun Zhou Yasheng Huang Wenjun Chen Rongyue Teng Wenhe Zhao Lidan Jin Jun Shen Jianguo Shen Yun Yen Linbo Wang

Transl Oncol 2021 Jan 20;14(1):100901. Epub 2020 Oct 20.

Department of Surgical Oncology, Affiliated Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China. Electronic address:

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January 2021

Functional interrogation of HOXA9 regulome in MLLr leukemia via reporter-based CRISPR/Cas9 screen.

Authors:
Hao Zhang Yang Zhang Xinyue Zhou Shaela Wright Judith Hyle Lianzhong Zhao Jie An Xujie Zhao Ying Shao Beisi Xu Hyeong-Min Lee Taosheng Chen Yang Zhou Xiang Chen Rui Lu Chunliang Li

Elife 2020 10 1;9. Epub 2020 Oct 1.

Department of Tumor Cell Biology, St. Jude Children's Research Hospital, Memphis, United States.

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October 2020

UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells.

Authors:
Beisi Xu Brett Mulvey Muneeb Salie Xiaoyang Yang Yurika Matsui Anjana Nityanandam Yiping Fan Jamy C Peng

Epigenetics Chromatin 2020 09 25;13(1):38. Epub 2020 Sep 25.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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September 2020

Ybx1 fine-tunes PRC2 activities to control embryonic brain development.

Authors:
Myron K Evans Yurika Matsui Beisi Xu Catherine Willis Jennifer Loome Luis Milburn Yiping Fan Vishwajeeth Pagala Jamy C Peng

Nat Commun 2020 08 13;11(1):4060. Epub 2020 Aug 13.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA.

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August 2020

From Influenza Virus Infections to Lupus: Synchronous Estrogen Receptor and RNA Polymerase II Binding Within the Immunoglobulin Heavy Chain Locus.

Authors:
Bart G Jones Robert E Sealy Rhiannon R Penkert Sherri L Surman Barbara K Birshtein Beisi Xu Geoffrey Neale Robert W Maul Patricia J Gearhart Julia L Hurwitz

Viral Immunol 2020 05 27;33(4):307-315. Epub 2020 Feb 27.

Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.

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May 2020

MYCN amplification and ATRX mutations are incompatible in neuroblastoma.

Authors:
Maged Zeineldin Sara Federico Xiang Chen Yiping Fan Beisi Xu Elizabeth Stewart Xin Zhou Jongrye Jeon Lyra Griffiths Rosa Nguyen Jackie Norrie John Easton Heather Mulder Donald Yergeau Yanling Liu Jianrong Wu Collin Van Ryn Arlene Naranjo Michael D Hogarty Marcin M Kamiński Marc Valentine Shondra M Pruett-Miller Alberto Pappo Jinghui Zhang Michael R Clay Armita Bahrami Peter Vogel Seungjae Lee Anang Shelat Jay F Sarthy Michael P Meers Rani E George Elaine R Mardis Richard K Wilson Steven Henikoff James R Downing Michael A Dyer

Nat Commun 2020 02 14;11(1):913. Epub 2020 Feb 14.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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February 2020

An ABC Transporter Drives Medulloblastoma Pathogenesis by Regulating Sonic Hedgehog Signaling.

Authors:
Juwina Wijaya BaoHan T Vo Jingjing Liu Beisi Xu Gang Wu Yao Wang Junmin Peng Jin Zhang Laura J Janke Brent A Orr Jiyang Yu Martine F Roussel John D Schuetz

Cancer Res 2020 04 16;80(7):1524-1537. Epub 2020 Jan 16.

Department of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee.

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April 2020

Muscle-derived Dpp regulates feeding initiation via endocrine modulation of brain dopamine biosynthesis.

Authors:
Maricela Robles-Murguia Deepti Rao David Finkelstein Beisi Xu Yiping Fan Fabio Demontis

Genes Dev 2020 01 12;34(1-2):37-52. Epub 2019 Dec 12.

Division of Developmental Biology, Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.

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January 2020

Targeting REGNASE-1 programs long-lived effector T cells for cancer therapy.

Authors:
Jun Wei Lingyun Long Wenting Zheng Yogesh Dhungana Seon Ah Lim Cliff Guy Yanyan Wang Yong-Dong Wang Chenxi Qian Beisi Xu Anil Kc Jordy Saravia Hongling Huang Jiyang Yu John G Doench Terrence L Geiger Hongbo Chi

Nature 2019 12 11;576(7787):471-476. Epub 2019 Dec 11.

Department of Immunology, St Jude Children's Research Hospital, Memphis, TN, USA.

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December 2019

Matters of life and death: How estrogen and estrogen receptor binding to the immunoglobulin heavy chain locus may influence outcomes of infection, allergy, and autoimmune disease.

Authors:
Bart G Jones Rhiannon R Penkert Sherri L Surman Robert E Sealy Stephane Pelletier Beisi Xu Geoff Neale Robert W Maul Patricia J Gearhart J L Hurwitz

Cell Immunol 2019 12 25;346:103996. Epub 2019 Oct 25.

Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA. Electronic address:

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December 2019

Nucleome Dynamics during Retinal Development.

Authors:
Jackie L Norrie Marybeth S Lupo Beisi Xu Issam Al Diri Marc Valentine Daniel Putnam Lyra Griffiths Jiakun Zhang Dianna Johnson John Easton Ying Shao Victoria Honnell Sharon Frase Shondra Miller Valerie Stewart Xin Zhou Xiang Chen Michael A Dyer

Neuron 2019 11 4;104(3):512-528.e11. Epub 2019 Sep 4.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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November 2019

Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia.

Authors:
Liqing Tian Ying Shao Stephanie Nance Jinjun Dang Beisi Xu Xiaotu Ma Yongjin Li Bensheng Ju Li Dong Scott Newman Xin Zhou Patrick Schreiner Elizabeth Tseng Ting Hon Meredith Ashby Chunliang Li John Easton Tanja A Gruber Jinghui Zhang

Nat Commun 2019 06 26;10(1):2789. Epub 2019 Jun 26.

Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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June 2019

Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping.

Authors:
Judith Hyle Yang Zhang Shaela Wright Beisi Xu Ying Shao John Easton Liqing Tian Ruopeng Feng Peng Xu Chunliang Li

Nucleic Acids Res 2019 07;47(13):6699-6713

Department of Tumor Cell Biology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.

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July 2019

Correction to: H3.3 K27M depletion increases differentiation and extends latency of diffuse intrinsic pontine glioma growth in vivo.

Authors:
André B Silveira Lawryn H Kasper Yiping Fan Hongjian Jin Gang Wu Timothy I Shaw Xiaoyan Zhu Jon D Larson John Easton Ying Shao Donald A Yergeau Celeste Rosencrance Kristy Boggs Michael C Rusch Liang Ding Junyuan Zhang David Finkelstein Rachel M Noyes Brent L Russell Beisi Xu Alberto Broniscer Cynthia Wetmore Stanley B Pounds David W Ellison Jinghui Zhang Suzanne J Baker

Acta Neuropathol 2019 Jun 11;137(6):1021. Epub 2019 Apr 11.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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June 2019

H3.3 K27M depletion increases differentiation and extends latency of diffuse intrinsic pontine glioma growth in vivo.

Authors:
André B Silveira Lawryn H Kasper Yiping Fan Hongjian Jin Gang Wu Timothy I Shaw Xiaoyan Zhu Jon D Larson John Easton Ying Shao Donald A Yergeau Celeste Rosencrance Kristy Boggs Michael C Rusch Liang Ding Junyuan Zhang David Finkelstein Rachel M Noyes Brent L Russell Beisi Xu Alberto Broniscer Cynthia Wetmore Stanley B Pounds David W Ellison Jinghui Zhang Suzanne J Baker

Acta Neuropathol 2019 04 15;137(4):637-655. Epub 2019 Feb 15.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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April 2019

Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1.

Authors:
Xiaoyang Yang Beisi Xu Brett Mulvey Myron Evans Samuel Jordan Yong-Dong Wang Vishwajeeth Pagala Junmin Peng Yiping Fan Arishna Patel Jamy C Peng

Nat Neurosci 2019 03 4;22(3):362-373. Epub 2019 Feb 4.

Department of Developmental Neurobiology and Division of Developmental Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

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March 2019

Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression.

Authors:
Jon D Larson Lawryn H Kasper Barbara S Paugh Hongjian Jin Gang Wu Chang-Hyuk Kwon Yiping Fan Timothy I Shaw André B Silveira Chunxu Qu Raymond Xu Xiaoyan Zhu Junyuan Zhang Helen R Russell Jennifer L Peters David Finkelstein Beisi Xu Tong Lin Christopher L Tinkle Zoltan Patay Arzu Onar-Thomas Stanley B Pounds Peter J McKinnon David W Ellison Jinghui Zhang Suzanne J Baker

Cancer Cell 2019 01 27;35(1):140-155.e7. Epub 2018 Dec 27.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA. Electronic address:

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January 2019

Metabolic heterogeneity underlies reciprocal fates of T17 cell stemness and plasticity.

Authors:
Peer W F Karmaus Xiang Chen Seon Ah Lim Andrés A Herrada Thanh-Long M Nguyen Beisi Xu Yogesh Dhungana Sherri Rankin Wenan Chen Celeste Rosencrance Kai Yang Yiping Fan Yong Cheng John Easton Geoffrey Neale Peter Vogel Hongbo Chi

Nature 2019 01 19;565(7737):101-105. Epub 2018 Dec 19.

Department of Immunology, St Jude Children's Research Hospital, Memphis, TN, USA.

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January 2019

The Hippo Pathway Prevents YAP/TAZ-Driven Hypertranscription and Controls Neural Progenitor Number.

Authors:
Alfonso Lavado Jun Young Park Joshua Paré David Finkelstein Haitao Pan Beisi Xu Yiping Fan Ram Parikshan Kumar Geoffrey Neale Young Don Kwak Peter J McKinnon Randy L Johnson Xinwei Cao

Dev Cell 2018 12 25;47(5):576-591.e8. Epub 2018 Oct 25.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA. Electronic address:

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December 2018

Complex sex-biased antibody responses: estrogen receptors bind estrogen response elements centered within immunoglobulin heavy chain gene enhancers.

Authors:
Bart G Jones Robert E Sealy Rhiannon R Penkert Sherri L Surman Robert W Maul Geoff Neale Beisi Xu Patricia J Gearhart Julia L Hurwitz

Int Immunol 2019 03;31(3):141-156

Department of Infectious Diseases, St. Jude Children's Research Hospital, Danny Thomas Place, Memphis, USA.

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March 2019

The genetic basis and cell of origin of mixed phenotype acute leukaemia.

Authors:
Thomas B Alexander Zhaohui Gu Ilaria Iacobucci Kirsten Dickerson John K Choi Beisi Xu Debbie Payne-Turner Hiroki Yoshihara Mignon L Loh John Horan Barbara Buldini Giuseppe Basso Sarah Elitzur Valerie de Haas C Michel Zwaan Allen Yeoh Dirk Reinhardt Daisuke Tomizawa Nobutaka Kiyokawa Tim Lammens Barbara De Moerloose Daniel Catchpoole Hiroki Hori Anthony Moorman Andrew S Moore Ondrej Hrusak Soheil Meshinchi Etan Orgel Meenakshi Devidas Michael Borowitz Brent Wood Nyla A Heerema Andrew Carrol Yung-Li Yang Malcolm A Smith Tanja M Davidsen Leandro C Hermida Patee Gesuwan Marco A Marra Yussanne Ma Andrew J Mungall Richard A Moore Steven J M Jones Marcus Valentine Laura J Janke Jeffrey E Rubnitz Ching-Hon Pui Liang Ding Yu Liu Jinghui Zhang Kim E Nichols James R Downing Xueyuan Cao Lei Shi Stanley Pounds Scott Newman Deqing Pei Jaime M Guidry Auvil Daniela S Gerhard Stephen P Hunger Hiroto Inaba Charles G Mullighan

Nature 2018 10 12;562(7727):373-379. Epub 2018 Sep 12.

Department of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.

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October 2018

Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses.

Authors:
Elizabeth Stewart Justina McEvoy Hong Wang Xiang Chen Victoria Honnell Monica Ocarz Brittney Gordon Jason Dapper Kaley Blankenship Yanling Yang Yuxin Li Timothy I Shaw Ji-Hoon Cho Xusheng Wang Beisi Xu Pankaj Gupta Yiping Fan Yu Liu Michael Rusch Lyra Griffiths Jongrye Jeon Burgess B Freeman Michael R Clay Alberto Pappo John Easton Sheila Shurtleff Anang Shelat Xin Zhou Kristy Boggs Heather Mulder Donald Yergeau Armita Bahrami Elaine R Mardis Richard K Wilson Jinghui Zhang Junmin Peng James R Downing Michael A Dyer

Cancer Cell 2018 09 23;34(3):411-426.e19. Epub 2018 Aug 23.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, MS 323, Memphis, TN 38105-3678, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38105, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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September 2018

Mouse medulloblastoma driven by CRISPR activation of cellular Myc.

Authors:
BaoHan T Vo Jin Ah Kwon Chunliang Li David Finkelstein Beisi Xu Brent A Orr Charles J Sherr Martine F Roussel

Sci Rep 2018 06 7;8(1):8733. Epub 2018 Jun 7.

Department of Tumor Cell Biology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA.

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June 2018

Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures.

Authors:
Lu Wang Daniel Hiler Beisi Xu Issam AlDiri Xiang Chen Xin Zhou Lyra Griffiths Marc Valentine Abbas Shirinifard András Sablauer Suresh Thiagarajan Marie-Elizabeth Barabas Jiakun Zhang Dianna Johnson Sharon Frase Michael A Dyer

Cell Rep 2018 03;22(10):2601-2614

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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March 2018

Drives a Subset of High-Risk Pediatric Neuroblastomas and Is Activated through Mechanisms Including Enhancer Hijacking and Focal Enhancer Amplification.

Authors:
Mark W Zimmerman Yu Liu Shuning He Adam D Durbin Brian J Abraham John Easton Ying Shao Beisi Xu Shizhen Zhu Xiaoling Zhang Zhaodong Li Nina Weichert-Leahey Richard A Young Jinghui Zhang A Thomas Look

Cancer Discov 2018 03 28;8(3):320-335. Epub 2017 Dec 28.

Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.

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March 2018

Orthotopic patient-derived xenografts of paediatric solid tumours.

Authors:
Elizabeth Stewart Sara M Federico Xiang Chen Anang A Shelat Cori Bradley Brittney Gordon Asa Karlstrom Nathaniel R Twarog Michael R Clay Armita Bahrami Burgess B Freeman Beisi Xu Xin Zhou Jianrong Wu Victoria Honnell Monica Ocarz Kaley Blankenship Jason Dapper Elaine R Mardis Richard K Wilson James Downing Jinghui Zhang John Easton Alberto Pappo Michael A Dyer

Nature 2017 09 30;549(7670):96-100. Epub 2017 Aug 30.

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.

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September 2017

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.

Authors:
Issam Aldiri Beisi Xu Lu Wang Xiang Chen Daniel Hiler Lyra Griffiths Marc Valentine Abbas Shirinifard Suresh Thiagarajan Andras Sablauer Marie-Elizabeth Barabas Jiakun Zhang Dianna Johnson Sharon Frase Xin Zhou John Easton Jinghui Zhang Elaine R Mardis Richard K Wilson James R Downing Michael A Dyer

Neuron 2017 May;94(3):550-568.e10

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA; Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA. Electronic address:

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May 2017

Deregulation of DUX4 and ERG in acute lymphoblastic leukemia.

Authors:
Jinghui Zhang Kelly McCastlain Hiroki Yoshihara Beisi Xu Yunchao Chang Michelle L Churchman Gang Wu Yongjin Li Lei Wei Ilaria Iacobucci Yu Liu Chunxu Qu Ji Wen Michael Edmonson Debbie Payne-Turner Kerstin B Kaufmann Shin-Ichiro Takayanagi Erno Wienholds Esmé Waanders Panagiotis Ntziachristos Sofia Bakogianni Jingjing Wang Iannis Aifantis Kathryn G Roberts Jing Ma Guangchun Song John Easton Heather L Mulder Xiang Chen Scott Newman Xiaotu Ma Michael Rusch Pankaj Gupta Kristy Boggs Bhavin Vadodaria James Dalton Yanling Liu Marcus L Valentine Li Ding Charles Lu Robert S Fulton Lucinda Fulton Yashodhan Tabib Kerri Ochoa Meenakshi Devidas Deqing Pei Cheng Cheng Jun Yang William E Evans Mary V Relling Ching-Hon Pui Sima Jeha Richard C Harvey I-Ming L Chen Cheryl L Willman Guido Marcucci Clara D Bloomfield Jessica Kohlschmidt Krzysztof Mrózek Elisabeth Paietta Martin S Tallman Wendy Stock Matthew C Foster Janis Racevskis Jacob M Rowe Selina Luger Steven M Kornblau Sheila A Shurtleff Susana C Raimondi Elaine R Mardis Richard K Wilson John E Dick Stephen P Hunger Mignon L Loh James R Downing Charles G Mullighan

Nat Genet 2016 12 24;48(12):1481-1489. Epub 2016 Oct 24.

Department of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.

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December 2016

Binding of estrogen receptors to switch sites and regulatory elements in the immunoglobulin heavy chain locus of activated B cells suggests a direct influence of estrogen on antibody expression.

Authors:
Bart G Jones Rhiannon R Penkert Beisi Xu Yiping Fan Geoff Neale Patricia J Gearhart Julia L Hurwitz

Mol Immunol 2016 09 3;77:97-102. Epub 2016 Aug 3.

Department of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA; Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA. Electronic address:

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September 2016

Hotspots for Vitamin-Steroid-Thyroid Hormone Response Elements Within Switch Regions of Immunoglobulin Heavy Chain Loci Predict a Direct Influence of Vitamins and Hormones on B Cell Class Switch Recombination.

Authors:
Julia L Hurwitz Rhiannon R Penkert Beisi Xu Yiping Fan Janet F Partridge Robert W Maul Patricia J Gearhart

Viral Immunol 2016 Mar 7;29(2):132-6. Epub 2016 Jan 7.

5 National Institute on Aging, National Institutes of Health , Baltimore, Maryland.

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March 2016

Brg1 coordinates multiple processes during retinogenesis and is a tumor suppressor in retinoblastoma.

Authors:
Issam Aldiri Itsuki Ajioka Beisi Xu Jiakun Zhang Xiang Chen Claudia Benavente David Finkelstein Dianna Johnson Jennifer Akiyama Len A Pennacchio Michael A Dyer

Development 2015 Dec;142(23):4092-106

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA

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December 2015

The glucose-sensing transcription factor MLX promotes myogenesis via myokine signaling.

Authors:
Liam C Hunt Beisi Xu David Finkelstein Yiping Fan Patrick A Carroll Pei-Feng Cheng Robert N Eisenman Fabio Demontis

Genes Dev 2015 Dec 19;29(23):2475-89. Epub 2015 Nov 19.

Department of Developmental Neurobiology, Division of Developmental Biology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA;

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December 2015

Quantification of Retinogenesis in 3D Cultures Reveals Epigenetic Memory and Higher Efficiency in iPSCs Derived from Rod Photoreceptors.

Authors:
Daniel Hiler Xiang Chen Jennifer Hazen Sergey Kupriyanov Patrick A Carroll Chunxu Qu Beisi Xu Dianna Johnson Lyra Griffiths Sharon Frase Alberto R Rodriguez Greg Martin Jiakun Zhang Jongrye Jeon Yiping Fan David Finkelstein Robert N Eisenman Kristin Baldwin Michael A Dyer

Cell Stem Cell 2015 Jul;17(1):101-15

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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July 2015

Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells.

Authors:
Zhiguang Li Hongzheng Dai Suzanne N Martos Beisi Xu Yang Gao Teng Li Guangjing Zhu Dustin E Schones Zhibin Wang

Genome Biol 2015 Jun 2;16:115. Epub 2015 Jun 2.

Department of Environmental Health Sciences, Laboratory of Human Environmental Epigenomes, Bloomberg School of Public Health, Johns Hopkins University, 615 N. Wolfe Street, Room E7816, Baltimore, MD, 21205, USA.

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June 2015

Epigenetic dysregulation by nickel through repressive chromatin domain disruption.

Authors:
Cynthia C Jose Beisi Xu Lakshmanan Jagannathan Candi Trac Ramya K Mallela Takamitsu Hattori Darson Lai Shohei Koide Dustin E Schones Suresh Cuddapah

Proc Natl Acad Sci U S A 2014 Oct 22;111(40):14631-6. Epub 2014 Sep 22.

Department of Environmental Medicine, New York University School of Medicine, Tuxedo, NY 10987;

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October 2014

A structural-based strategy for recognition of transcription factor binding sites.

Authors:
Beisi Xu Dustin E Schones Yongmei Wang Haojun Liang Guohui Li

PLoS One 2013 8;8(1):e52460. Epub 2013 Jan 8.

Laboratory of Molecular Modeling and Design, Dalian Institute of Chemical Physics, The Chinese Academy of Sciences, Dalian, Liaoning, China.

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August 2013

Fast and accurate computation schemes for evaluating vibrational entropy of proteins.

Authors:
Beisi Xu Hujun Shen Xiao Zhu Guohui Li

J Comput Chem 2011 Nov 27;32(15):3188-93. Epub 2011 Aug 27.

State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, The Chinese Academy of Sciences, Dalian, China.

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November 2011

Insight into mechanism of small molecule inhibitors of the MDM2-p53 interaction: molecular dynamics simulation and free energy analysis.

Authors:
Jianzhong Chen Jinan Wang Beisi Xu Weiliang Zhu Guohui Li

J Mol Graph Model 2011 Sep 13;30:46-53. Epub 2011 Jun 13.

Laboratory of Molecular Modeling and Design, State Kay Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Science, 116011 China.

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September 2011

An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles.

Authors:
Beisi Xu Yuedong Yang Haojun Liang Yaoqi Zhou

Proteins 2009 Aug;76(3):718-30

Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei, Anhui, China.

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August 2009

Thermodynamic behaviors of polyampholytes at low temperatures.

Authors:
Beisi Xu Lei Huang Haojun Liang

J Chem Phys 2004 Oct;121(15):7494-500

Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.

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October 2004