Bastien Llamas

Bastien Llamas

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Bastien Llamas

Bastien Llamas

Publications by authors named "Bastien Llamas"

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56Publications

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genozip: a fast and efficient compression tool for VCF files.

Bioinformatics 2020 May 14. Epub 2020 May 14.

School of Biological Sciences, The Environment Institute, Faculty of Sciences, The University of Adelaide, Adelaide SA 5005, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btaa290DOI Listing
May 2020

More Arrows in the Ancient DNA Quiver: Use of Paleoepigenomes and Paleomicrobiomes to Investigate Animal Adaptation to Environment.

Mol Biol Evol 2020 02;37(2):307-319

Australian Centre for Ancient DNA, School of Biological Sciences, Environment Institute, University of Adelaide, Adelaide, South Australia, Australia.

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http://dx.doi.org/10.1093/molbev/msz231DOI Listing
February 2020

Spatiotemporal landscape genetics: Investigating ecology and evolution through space and time.

Mol Ecol 2020 01 17;29(2):218-246. Epub 2019 Dec 17.

Australian Centre for Ancient DNA, School of Biological Sciences, Environment Institute, University of Adelaide, Adelaide, South Australia, Australia.

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http://dx.doi.org/10.1111/mec.15315DOI Listing
January 2020

Race in a genome: long read sequencing, ethnicity-specific reference genomes and the shifting horizon of race.

J Anthropol Sci 2019 Dec 7;96:91-106. Epub 2019 Oct 7.

Australian Centre for Ancient DNA, School of Biological Science, Environment Institute, The University of Adelaide, Adelaide SA 5005, Australia,

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http://dx.doi.org/10.4436/JASS.97004DOI Listing
December 2019

Widespread male sex bias in mammal fossil and museum collections.

Proc Natl Acad Sci U S A 2019 09 3;116(38):19019-19024. Epub 2019 Sep 3.

Australian Centre for Ancient DNA, The University of Adelaide, Adelaide, SA 5005, Australia;

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http://dx.doi.org/10.1073/pnas.1903275116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6754617PMC
September 2019

Molecular resolution to a morphological controversy: The case of North American fossil muskoxen Bootherium and Symbos.

Mol Phylogenet Evol 2018 12 16;129:70-76. Epub 2018 Aug 16.

Australian Centre for Ancient DNA (ACAD), School of Biological Sciences, Environment Institute, University of Adelaide, Australia. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10557903183029
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http://dx.doi.org/10.1016/j.ympev.2018.08.008DOI Listing
December 2018

Reconstructing the Deep Population History of Central and South America.

Cell 2018 11 8;175(5):1185-1197.e22. Epub 2018 Nov 8.

Department of Genetics, Harvard Medical School, Boston, MA 02115, USA; Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183138
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http://dx.doi.org/10.1016/j.cell.2018.10.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6327247PMC
November 2018

Molecular phylogenetics supports the origin of an endemic Balearic shrew lineage (Nesiotites) coincident with the Messinian Salinity Crisis.

Mol Phylogenet Evol 2018 08 31;125:188-195. Epub 2018 Mar 31.

Departament de Biodiversitat i Conservació, Institut Mediterrani d'Estudis Avançats (CSIC-UIB), Esporles, Illes Balears, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2018.03.028DOI Listing
August 2018

Consent: Data-sharing for indigenous peoples.

Nature 2017 06;546(7659):474

University of Pennsylvania, Philadelphia, USA.

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http://dx.doi.org/10.1038/546474aDOI Listing
June 2017

Experimental conditions improving in-solution target enrichment for ancient DNA.

Mol Ecol Resour 2017 May 18;17(3):508-522. Epub 2016 Sep 18.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350K, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/1755-0998.12595DOI Listing
May 2017

Megafaunal isotopes reveal role of increased moisture on rangeland during late Pleistocene extinctions.

Nat Ecol Evol 2017 Apr 18;1(5):125. Epub 2017 Apr 18.

Australian Centre for Ancient DNA, University of Adelaide, North Terrace, South Australia 5005, Australia.

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http://www.nature.com/articles/s41559-017-0125
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http://dx.doi.org/10.1038/s41559-017-0125DOI Listing
April 2017

Human evolution: a tale from ancient genomes.

Philos Trans R Soc Lond B Biol Sci 2017 02;372(1713)

Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350 K Copenhagen, Denmark

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http://rstb.royalsocietypublishing.org/content/royptb/372/17
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http://dx.doi.org/10.1098/rstb.2015.0484DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182416PMC
February 2017

The origin and phylogenetic relationships of the New Zealand ravens.

Mol Phylogenet Evol 2017 01 24;106:136-143. Epub 2016 Sep 24.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, North Terrace Campus, South Australia 5005, Australia.

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http://dx.doi.org/10.1016/j.ympev.2016.09.022DOI Listing
January 2017

Ancient mitochondrial genomes clarify the evolutionary history of New Zealand's enigmatic acanthisittid wrens.

Mol Phylogenet Evol 2016 Sep 31;102:295-304. Epub 2016 May 31.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, North Terrace Campus, South Australia 5005, Australia.

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http://dx.doi.org/10.1016/j.ympev.2016.05.038DOI Listing
September 2016

Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain.

Front Cardiovasc Med 2014 10;1:11. Epub 2014 Dec 10.

Cardiovascular Biology Research Unit, Institut de recherches cliniques de Montréal (IRCM), Université de Montréal , Montréal, QC , Canada.

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http://dx.doi.org/10.3389/fcvm.2014.00011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4668859PMC
December 2015

Differential Gene Expression Profiling of Orbital Adipose Tissue in Thyroid Orbitopathy.

Invest Ophthalmol Vis Sci 2015 Oct;56(11):6438-47

Department of Ophthalmology, Flinders University, Bedford Park, South Australia, Australia.

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http://dx.doi.org/10.1167/iovs.15-17185DOI Listing
October 2015

Late pleistocene Australian marsupial DNA clarifies the affinities of extinct megafaunal kangaroos and wallabies.

Mol Biol Evol 2015 Mar 18;32(3):574-84. Epub 2014 Dec 18.

Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, SA, Australia

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http://dx.doi.org/10.1093/molbev/msu338DOI Listing
March 2015

Molecular phylogeny, biogeography, and habitat preference evolution of marsupials.

Mol Biol Evol 2014 Sep 30;31(9):2322-30. Epub 2014 May 30.

Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, Adelaide, SA, Australia

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http://dx.doi.org/10.1093/molbev/msu176DOI Listing
September 2014

Climate change underlies global demographic, genetic, and cultural transitions in pre-Columbian southern Peru.

Proc Natl Acad Sci U S A 2014 Jul 16;111(26):9443-8. Epub 2014 Jun 16.

German Archaeological Institute (DAI), Commission for Archaeology of Non-European Cultures (KAAK), D-53173 Bonn, Germany;

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http://dx.doi.org/10.1073/pnas.1403466111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4084453PMC
July 2014

Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution.

Science 2014 May;344(6186):898-900

Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, North Terrace Campus, South Australia 5005, Australia.

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http://scienceintheclassroom.org/sites/default/files/researc
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http://science.sciencemag.org/content/sci/344/6186/898.full.
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http://dx.doi.org/10.1126/science.1251981DOI Listing
May 2014

Reply to Santiago-Rodriguez et al.: Was luxS really isolated from 25- to 40-million-year-old bacteria?

FEMS Microbiol Lett 2014 Apr 2;353(2):85-6. Epub 2014 Apr 2.

University of Adelaide, Adelaide, SA, Australia.

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http://dx.doi.org/10.1111/1574-6968.12415DOI Listing
April 2014

Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta.

Mol Ecol 2014 Feb 9;23(3):522-33. Epub 2013 Dec 9.

State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, Hubei, 430074, China; Australian Centre for Ancient DNA, School of Earth & Environmental Sciences, University of Adelaide, Adelaide, SA, 5000, Australia.

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http://dx.doi.org/10.1111/mec.12576DOI Listing
February 2014

Ancient mitochondrial genome reveals unsuspected taxonomic affinity of the extinct Chatham duck (Pachyanas chathamica) and resolves divergence times for New Zealand and sub-Antarctic brown teals.

Mol Phylogenet Evol 2014 Jan 28;70:420-8. Epub 2013 Aug 28.

Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, North Terrace Campus, South Australia 5005, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2013.08.017DOI Listing
January 2014

Novel effects of chromosome Y on cardiac regulation, chromatin remodeling, and neonatal programming in male mice.

Endocrinology 2013 Dec 8;154(12):4746-56. Epub 2013 Oct 8.

Institut de Recherches Cliniques de Montréal, 110 Pine Avenue West, Montréal, Québec, Canada H2W 1R7.

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http://dx.doi.org/10.1210/en.2013-1699DOI Listing
December 2013

DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification.

Investig Genet 2013 Dec 2;4(1):26. Epub 2013 Dec 2.

Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia.

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http://dx.doi.org/10.1186/2041-2223-4-26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879034PMC
December 2013

High-resolution analysis of cytosine methylation in ancient DNA.

PLoS One 2012 19;7(1):e30226. Epub 2012 Jan 19.

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030226PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261890PMC
June 2012

Chromosome Y variants from different inbred mouse strains are linked to differences in the morphologic and molecular responses of cardiac cells to postpubertal testosterone.

BMC Genomics 2009 Apr 7;10:150. Epub 2009 Apr 7.

Experimental Cardiovascular Biology Research Unit, Institut de recherches cliniques de Montréal (IRCM) and Université de Montréal, Montréal, QC, Canada.

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http://dx.doi.org/10.1186/1471-2164-10-150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2679052PMC
April 2009

Cardiac mass and cardiomyocyte size are governed by different genetic loci on either autosomes or chromosome Y in recombinant inbred mice.

Physiol Genomics 2007 Oct 12;31(2):176-82. Epub 2007 Jun 12.

Experimental Cardiovascular Biology Research Unit, Institut de Recherches Cliniques de Montréal and Université de Montréal, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1152/physiolgenomics.00072.2007DOI Listing
October 2007

Hypertensive cardiac remodeling in males and females: from the bench to the bedside.

Hypertension 2007 Mar 22;49(3):401-7. Epub 2007 Jan 22.

Experimental Cardiovascular Biology Research Unit, Institut de Recherches Cliniques de Montréal, Montréal, Quebec, Canada.

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http://dx.doi.org/10.1161/01.HYP.0000256279.49882.d8DOI Listing
March 2007

Genetic determinants of systolic and pulse pressure in an intercross between normotensive inbred rats.

Hypertension 2006 Nov 2;48(5):921-6. Epub 2006 Oct 2.

Experimental Cardiovascular Biology Research Unit, Institut de Recherches Cliniques de Montréal, Montréal, Quebec, Canada H2W 1R7.

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http://dx.doi.org/10.1161/01.HYP.0000244758.50351.29DOI Listing
November 2006

A genetic locus accentuates the effect of volume overload on adverse left ventricular remodeling in male and female rats.

Hypertension 2006 Jan 12;47(1):128-33. Epub 2005 Dec 12.

Experimental Cardiovascular Biology Research Unit, Institut de Recherches Cliniques de Montréal, Quebec, Canada.

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http://hyper.ahajournals.org/content/47/1/128.full.pdf
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http://hyper.ahajournals.org/cgi/doi/10.1161/01.HYP.00001967
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http://dx.doi.org/10.1161/01.HYP.0000196732.22719.47DOI Listing
January 2006

Distinct QTLs are linked to cardiac left ventricular mass in a sex-specific manner in a normotensive inbred rat inter-cross.

Mamm Genome 2005 Sep 20;16(9):700-11. Epub 2005 Oct 20.

Experimental Cardiovascular Biology Research Unit, Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada, H2W 1R7.

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http://dx.doi.org/10.1007/s00335-005-0041-zDOI Listing
September 2005

Identification and validation of Loci and candidate genes linked to cardiac hypertrophy.

Methods Mol Med 2005 ;112:321-37

Experimental Cardiovascular Biology Research Unit, Institut de recherches cliniques de Montréal, Québec, Canada.

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http://dx.doi.org/10.1385/1-59259-879-x:321DOI Listing
August 2005

QTL mapping for traits associated with stress neuroendocrine reactivity in rats.

Mamm Genome 2005 Jul;16(7):505-15

Laboratoire Neurogénétique et Stress, INSERM U471/INRA UMR1243, Université Victor Segalen Bordeaux 2, Institut François Magendie, Rue Camille Saint Saens, 33077 Bordeaux cedex, France.

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http://dx.doi.org/10.1007/s00335-005-0022-2DOI Listing
July 2005

The Collaborative Cross, a community resource for the genetic analysis of complex traits.

Authors:
Gary A Churchill David C Airey Hooman Allayee Joe M Angel Alan D Attie Jackson Beatty William D Beavis John K Belknap Beth Bennett Wade Berrettini Andre Bleich Molly Bogue Karl W Broman Kari J Buck Ed Buckler Margit Burmeister Elissa J Chesler James M Cheverud Steven Clapcote Melloni N Cook Roger D Cox John C Crabbe Wim E Crusio Ariel Darvasi Christian F Deschepper R W Doerge Charles R Farber Jiri Forejt Daniel Gaile Steven J Garlow Hartmut Geiger Howard Gershenfeld Terry Gordon Jing Gu Weikuan Gu Gerald de Haan Nancy L Hayes Craig Heller Heinz Himmelbauer Robert Hitzemann Kent Hunter Hui-Chen Hsu Fuad A Iraqi Boris Ivandic Howard J Jacob Ritsert C Jansen Karl J Jepsen Dabney K Johnson Thomas E Johnson Gerd Kempermann Christina Kendziorski Malak Kotb R Frank Kooy Bastien Llamas Frank Lammert Jean-Michel Lassalle Pedro R Lowenstein Lu Lu Aldons Lusis Kenneth F Manly Ralph Marcucio Doug Matthews Juan F Medrano Darla R Miller Guy Mittleman Beverly A Mock Jeffrey S Mogil Xavier Montagutelli Grant Morahan David G Morris Richard Mott Joseph H Nadeau Hiroki Nagase Richard S Nowakowski Bruce F O'Hara Alexander V Osadchuk Grier P Page Beverly Paigen Kenneth Paigen Abraham A Palmer Huei-Ju Pan Leena Peltonen-Palotie Jeremy Peirce Daniel Pomp Michal Pravenec Daniel R Prows Zhonghua Qi Roger H Reeves John Roder Glenn D Rosen Eric E Schadt Leonard C Schalkwyk Ze'ev Seltzer Kazuhiro Shimomura Siming Shou Mikko J Sillanpää Linda D Siracusa Hans-Willem Snoeck Jimmy L Spearow Karen Svenson Lisa M Tarantino David Threadgill Linda A Toth William Valdar Fernando Pardo-Manuel de Villena Craig Warden Steve Whatley Robert W Williams Tim Wiltshire Nengjun Yi Dabao Zhang Min Zhang Fei Zou

Nat Genet 2004 Nov;36(11):1133-7

The Jackson Laboratory, 600 Main Street Bar Harbor, Maine 04609, USA.

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http://dx.doi.org/10.1038/ng1104-1133DOI Listing
November 2004

Corticosteroid binding globulin: a new target for cortisol-driven obesity.

Mol Endocrinol 2004 Jul 15;18(7):1687-96. Epub 2004 Apr 15.

Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1243-Institut National de la Santé et de la Recherche Médicale Unité 471, Université Victor Segalen Bordeaux 2, Institut François Magendie, 33077 Bordeaux, France.

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http://dx.doi.org/10.1210/me.2004-0005DOI Listing
July 2004