Barry Merriman

Barry Merriman

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Barry Merriman

Barry Merriman

Publications by authors named "Barry Merriman"

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54Publications

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Emergency Department and Inpatient Health Care Services Utilization by the Elderly Population: Hurricane Sandy in The State of New Jersey.

Disaster Med Public Health Prep 2018 12 22;12(6):730-738. Epub 2018 Mar 22.

Health Division,Logistic Management Institute,Tysons,Virginia.

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http://dx.doi.org/10.1017/dmp.2018.1DOI Listing
December 2018

Multiple self-healing palmoplantar carcinoma: a familial predisposition to skin cancer with primary palmoplantar and conjunctival lesions.

J Invest Dermatol 2015 Jan 22;135(1):304-308. Epub 2014 Jul 22.

Laboratory of Human Embryology and Genetics, Institute of Medical Biology, A*STAR, Singapore, Singapore; Department of Paediatrics, National University of Singapore, Singapore, Singapore. Electronic address:

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http://dx.doi.org/10.1038/jid.2014.311DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4269804PMC
January 2015

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:
Catherine A Brownstein Alan H Beggs Nils Homer Barry Merriman Timothy W Yu Katherine C Flannery Elizabeth T DeChene Meghan C Towne Sarah K Savage Emily N Price Ingrid A Holm Lovelace J Luquette Elaine Lyon Joseph Majzoub Peter Neupert David McCallie Peter Szolovits Huntington F Willard Nancy J Mendelsohn Renee Temme Richard S Finkel Sabrina W Yum Livija Medne Shamil R Sunyaev Ivan Adzhubey Christopher A Cassa Paul I W de Bakker Hatice Duzkale Piotr Dworzyński William Fairbrother Laurent Francioli Birgit H Funke Monica A Giovanni Robert E Handsaker Kasper Lage Matthew S Lebo Monkol Lek Ignaty Leshchiner Daniel G MacArthur Heather M McLaughlin Michael F Murray Tune H Pers Paz P Polak Soumya Raychaudhuri Heidi L Rehm Rachel Soemedi Nathan O Stitziel Sara Vestecka Jochen Supper Claudia Gugenmus Bernward Klocke Alexander Hahn Max Schubach Mortiz Menzel Saskia Biskup Peter Freisinger Mario Deng Martin Braun Sven Perner Richard J H Smith Janeen L Andorf Jian Huang Kelli Ryckman Val C Sheffield Edwin M Stone Thomas Bair E Ann Black-Ziegelbein Terry A Braun Benjamin Darbro Adam P DeLuca Diana L Kolbe Todd E Scheetz Aiden E Shearer Rama Sompallae Kai Wang Alexander G Bassuk Erik Edens Katherine Mathews Steven A Moore Oleg A Shchelochkov Pamela Trapane Aaron Bossler Colleen A Campbell Jonathan W Heusel Anne Kwitek Tara Maga Karin Panzer Thomas Wassink Douglas Van Daele Hela Azaiez Kevin Booth Nic Meyer Michael M Segal Marc S Williams Gerard Tromp Peter White Donald Corsmeier Sara Fitzgerald-Butt Gail Herman Devon Lamb-Thrush Kim L McBride David Newsom Christopher R Pierson Alexander T Rakowsky Aleš Maver Luca Lovrečić Anja Palandačić Borut Peterlin Ali Torkamani Anna Wedell Mikael Huss Andrey Alexeyenko Jessica M Lindvall Måns Magnusson Daniel Nilsson Henrik Stranneheim Fulya Taylan Christian Gilissen Alexander Hoischen Bregje van Bon Helger Yntema Marcel Nelen Weidong Zhang Jason Sager Lu Zhang Kathryn Blair Deniz Kural Michael Cariaso Greg G Lennon Asif Javed Saloni Agrawal Pauline C Ng Komal S Sandhu Shuba Krishna Vamsi Veeramachaneni Ofer Isakov Eran Halperin Eitan Friedman Noam Shomron Gustavo Glusman Jared C Roach Juan Caballero Hannah C Cox Denise Mauldin Seth A Ament Lee Rowen Daniel R Richards F Anthony San Lucas Manuel L Gonzalez-Garay C Thomas Caskey Yu Bai Ying Huang Fang Fang Yan Zhang Zhengyuan Wang Jorge Barrera Juan M Garcia-Lobo Domingo González-Lamuño Javier Llorca Maria C Rodriguez Ignacio Varela Martin G Reese Francisco M De La Vega Edward Kiruluta Michele Cargill Reece K Hart Jon M Sorenson Gholson J Lyon David A Stevenson Bruce E Bray Barry M Moore Karen Eilbeck Mark Yandell Hongyu Zhao Lin Hou Xiaowei Chen Xiting Yan Mengjie Chen Cong Li Can Yang Murat Gunel Peining Li Yong Kong Austin C Alexander Zayed I Albertyn Kym M Boycott Dennis E Bulman Paul M K Gordon A Micheil Innes Bartha M Knoppers Jacek Majewski Christian R Marshall Jillian S Parboosingh Sarah L Sawyer Mark E Samuels Jeremy Schwartzentruber Isaac S Kohane David M Margulies

Genome Biol 2014 Mar 25;15(3):R53. Epub 2014 Mar 25.

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http://dx.doi.org/10.1186/gb-2014-15-3-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073084PMC
March 2014

Simple computation of reaction-diffusion processes on point clouds.

Proc Natl Acad Sci U S A 2013 Jun 20;110(23):9209-14. Epub 2013 May 20.

Mathematical Institute, University of Oxford, Oxford OX1 3LB, United Kingdom.

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http://www.pnas.org/lookup/doi/10.1073/pnas.1221408110
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http://dx.doi.org/10.1073/pnas.1221408110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3677480PMC
June 2013

Progress in ion torrent semiconductor chip based sequencing.

Electrophoresis 2012 Dec;33(23):3397-417

Ion Torrent, A Division of Life Technologies, Inc., Guilford, CT 06437, USA.

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http://doi.wiley.com/10.1002/elps.201200424
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http://dx.doi.org/10.1002/elps.201200424DOI Listing
December 2012

Bioinformatics. Introduction.

Yale J Biol Med 2012 Sep;85(3):305-8

CEO of Ion Torrent, a division of Life Technologies, Inc.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3447194PMC
September 2012

Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1.

Nat Genet 2012 May 13;44(6):709-13. Epub 2012 May 13.

Institute of Medical Biology, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.

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http://dx.doi.org/10.1038/ng.2259DOI Listing
May 2012

SeqWare Query Engine: storing and searching sequence data in the cloud.

BMC Bioinformatics 2010 Dec 21;11 Suppl 12:S2. Epub 2010 Dec 21.

UNC Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1186/1471-2105-11-S12-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040528PMC
December 2010

Local alignment of generalized k-base encoded DNA sequence.

BMC Bioinformatics 2010 Jun 24;11:347. Epub 2010 Jun 24.

Department of Computer Science, University of California Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1186/1471-2105-11-347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911458PMC
June 2010

U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line.

PLoS Genet 2010 Jan 29;6(1):e1000832. Epub 2010 Jan 29.

Department of Human Genetics, University of California Los Angeles, Los Angeles, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000832DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2813426PMC
January 2010

BFAST: an alignment tool for large scale genome resequencing.

PLoS One 2009 Nov 11;4(11):e7767. Epub 2009 Nov 11.

Department of Computer Science, University of California Los Angeles, Los Angeles, CA, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007767PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2770639PMC
November 2009

Complete cytoreduction offers longterm survival in patients with peritoneal carcinomatosis from appendiceal tumors of unfavorable histology.

J Am Coll Surg 2009 Sep 9;209(3):308-12. Epub 2009 Jul 9.

Division of Surgery, Section of Surgical Oncology, Institute of Cancer Care, Mercy Medical Center, 227 St. Paul Pl., Baltimore, MD 21202, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S107275150900469
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http://dx.doi.org/10.1016/j.jamcollsurg.2009.04.019DOI Listing
September 2009

Local alignment of two-base encoded DNA sequence.

BMC Bioinformatics 2009 Jun 9;10:175. Epub 2009 Jun 9.

Department of Computer Science, University of California Los Angeles, Los Angeles, California 90095, USA.

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http://www.biomedcentral.com/1471-2105/10/175
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http://dx.doi.org/10.1186/1471-2105-10-175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2709925PMC
June 2009

Molecular dynamics of extreme mass segregation in a rapidly collapsing bubble.

Phys Rev Lett 2008 Dec 5;101(23):234301. Epub 2008 Dec 5.

Department of Physics and Astronomy, University of California at Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1103/PhysRevLett.101.234301DOI Listing
December 2008

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Nature 2008 Mar 17;452(7184):215-9. Epub 2008 Feb 17.

Department of Molecular, Cell, and Developmental Biology, University of California at Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1038/nature06745DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2377394PMC
March 2008

Pretest risk assessment in suspected acute pulmonary embolism.

Acad Radiol 2008 Jan;15(1):3-14

Russell H. Morgan Department of Radiology and Radiological Sciences, The Johns Hopkins University School of Medicine,Baltimore, MD 21287-0801, USA.

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http://dx.doi.org/10.1016/j.acra.2007.07.019DOI Listing
January 2008

Are physician estimates of asthma severity less accurate in black than in white patients?

J Gen Intern Med 2007 Jul 24;22(7):976-81. Epub 2007 Apr 24.

Department of Pediatrics, Johns Hopkins University, 200 N. Wolfe Street, Suite 3025, Baltimore, MD 21287, USA.

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http://dx.doi.org/10.1007/s11606-007-0209-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2583798PMC
July 2007

Patient factors that physicians use to assign asthma treatment.

Arch Intern Med 2007 Jul;167(13):1360-6

Division of Pulmonary and Critical Care Medicine, The Johns Hopkins University School of Medicine, 1830 E Monument St, Fifth Floor, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1001/archinte.167.13.1360DOI Listing
July 2007

Repetitive sequence environment distinguishes housekeeping genes.

Gene 2007 Apr 5;390(1-2):153-65. Epub 2006 Oct 5.

UCLA Department of Human Genetics, David Geffen School of Medicine, Gonda Center, 695 E. Young Drive South, Los Angeles, California 90095-7088, USA.

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http://dx.doi.org/10.1016/j.gene.2006.09.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1857324PMC
April 2007

High density SNP association study of a major autism linkage region on chromosome 17.

Hum Mol Genet 2007 Mar 21;16(6):704-15. Epub 2007 Mar 21.

Department of Human Genetics, University of California, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1093/hmg/ddm015DOI Listing
March 2007

Mortality in patients hospitalized for asthma exacerbations in the United States.

Am J Respir Crit Care Med 2006 Sep 15;174(6):633-8. Epub 2006 Jun 15.

Division of Pulmonary and Critical Care Medicine, Department of Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.

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http://www.atsjournals.org/doi/abs/10.1164/rccm.200601-007OC
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http://dx.doi.org/10.1164/rccm.200601-007OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648055PMC
September 2006

Appendiceal cancer and peritoneal carcinomatosis: a report of 29 cases.

Am Surg 2006 Aug;72(8):714-7; discussion 717-8

Department of Surgery, Division of Surgical Oncology, Kaiser Permanente of the Mid-Atlantic States, Washington, District of Columbia, USA.

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August 2006

Scanning systems and protocols used during imaging for acute pulmonary embolism: how much do our clinical colleagues know?

Acad Radiol 2006 Jun;13(6):678-85

Russell H. Morgan Department of Radiology and Radiological Sciences, Johns Hopkins Hospital, Baltimore, MD 21287, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S107663320600090
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http://dx.doi.org/10.1016/j.acra.2006.02.032DOI Listing
June 2006

CT pulmonary angiography is the first-line imaging test for acute pulmonary embolism: a survey of US clinicians.

Acad Radiol 2006 Apr;13(4):434-46

Russell H. Morgan Department of Radiology and Radiological Sciences, 601 N. Caroline Street, Room 3254, The Johns Hopkins University School of Medicine, Baltimore, MD 21287-0801, USA.

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http://dx.doi.org/10.1016/j.acra.2006.01.002DOI Listing
April 2006

Distinct transcription profiles of primary and secondary glioblastoma subgroups.

Cancer Res 2006 Jan;66(1):159-67

Department of Human Genetics, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-05-0077DOI Listing
January 2006

Home environmental intervention in inner-city asthma: a randomized controlled clinical trial.

Ann Allergy Asthma Immunol 2005 Dec;95(6):518-24

Department of Pediatrics Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, USA.

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http://dx.doi.org/10.1016/S1081-1206(10)61012-5DOI Listing
December 2005

Do high-resolution CT findings of usual interstitial pneumonitis obviate lung biopsy? Views of pulmonologists.

Respiration 2005 Mar-Apr;72(2):134-41

Department of Medicine, Division of Pulmonary and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1159/000084043DOI Listing
August 2005

Evidence for sex-specific risk alleles in autism spectrum disorder.

Am J Hum Genet 2004 Dec 5;75(6):1117-23. Epub 2004 Oct 5.

Department of Human Genetics, University of California, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1086/426034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182147PMC
December 2004

A comparison of gene expression profiles produced by SAGE, long SAGE, and oligonucleotide chips.

Genomics 2004 Oct;84(4):631-6

Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC 27710, USA.

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http://dx.doi.org/10.1016/j.ygeno.2004.06.014DOI Listing
October 2004

Hospitalizations for tuberculosis in the United States in 2000: predictors of in-hospital mortality.

Chest 2004 Oct;126(4):1079-86

Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, Room 577, 1830 East Monument St, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1378/chest.126.4.1079DOI Listing
October 2004

The prevalence of rat allergen in inner-city homes and its relationship to sensitization and asthma morbidity.

J Allergy Clin Immunol 2003 Aug;112(2):346-52

Department of Pediatrics, Division of Allergy and Immunology, Johns Hopkins University, School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1067/mai.2003.1640DOI Listing
August 2003

Physician satisfaction with high-resolution CT services provided by radiologists: results of a nationwide survey of pulmonary subspecialists.

AJR Am J Roentgenol 2003 Mar;180(3):585-9

The Russell H. Morgan Department of Radiology and Radiological Sciences, The Johns Hopkins Medical Institutions, 601 N. Caroline St., JHOC Rm. 3254, Baltimore, MD 21287, USA.

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http://www.ajronline.org/doi/10.2214/ajr.180.3.1800585
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http://dx.doi.org/10.2214/ajr.180.3.1800585DOI Listing
March 2003

Utility of high-resolution CT for management of diffuse lung disease: results of a survey of U.S. pulmonary physicians.

Acad Radiol 2003 Feb;10(2):167-75

Russell H. Morgan Department of Radiology and Radiological Sciences Johns Hopkins Medical Institutions, 601 N Caroline St, JHOC Rm 3254, Baltimore, MD 21287, USA.

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http://dx.doi.org/10.1016/s1076-6332(03)80041-7DOI Listing
February 2003

Availability, requesting practices, and barriers to referral for high-resolution CT of the lungs: results of a survey of U.S. pulmonologists.

Acad Radiol 2002 Dec;9(12):1370-7

Russell H. Morgan Department of Radiology and Radiological Sciences, Johns Hopkins Medical Institutions, 601 N Caroline St, JHOC Rm 3254, Baltimore, MD 21287, USA.

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http://dx.doi.org/10.1016/s1076-6332(03)80663-3DOI Listing
December 2002

Molecular dynamics simulation of the response of a gas to a spherical piston: implications for sonoluminescence.

Phys Rev E Stat Nonlin Soft Matter Phys 2002 Sep 20;66(3 Pt 2B):036310. Epub 2002 Sep 20.

Department of Mathematics, Simon Fraser University, Burnaby, British Columbia, Canada V5A 1S6.

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https://link.aps.org/doi/10.1103/PhysRevE.66.036310
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http://dx.doi.org/10.1103/PhysRevE.66.036310DOI Listing
September 2002