Publications by authors named "Barend Mons"

40Publications

The VODAN IN: support of a FAIR-based infrastructure for COVID-19.

Authors:
Barend Mons

Eur J Hum Genet 2020 06 6;28(6):724-727. Epub 2020 May 6.

Human Genetics, LUMC, Leiden, The Netherlands.

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http://dx.doi.org/10.1038/s41431-020-0635-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7201909PMC
June 2020

Invest 5% of research funds in ensuring data are reusable.

Authors:
Barend Mons

Nature 2020 02;578(7796):491

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http://dx.doi.org/10.1038/d41586-020-00505-7DOI Listing
February 2020

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain.

Orphanet J Rare Dis 2016 08 1;11(1):97. Epub 2016 Aug 1.

Department of Human Genetics, Leiden University Medical Center, PO Box 9600, Leiden, 2300 RC, The Netherlands.

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http://dx.doi.org/10.1186/s13023-016-0475-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968014PMC
August 2016

The ELIXIR channel in F1000Research.

F1000Res 2015 18;4. Epub 2015 Dec 18.

Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743137PMC
http://dx.doi.org/10.12688/f1000research.7587.2DOI Listing
May 2016

The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands.

F1000Res 2015 2;4:33. Epub 2015 Feb 2.

Dutch Techcentre for Life Sciences (Foundation office), Catharijnesingel 54, 3511 GC Utrecht, Netherlands; Netherlands eScience Center, Science Park 140, 1098 XG Amsterdam, Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743138PMC
http://dx.doi.org/10.12688/f1000research.6009.2DOI Listing
February 2016

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study.

J Biomed Semantics 2015 9;6. Epub 2015 Feb 9.

Department of Human Genetics, Leiden University Medical Center, PO Box 9600, 2300 RC Leiden, The Netherlands.

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http://dx.doi.org/10.1186/2041-1480-6-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603842PMC
October 2015

Integrative knowledge management to enhance pharmaceutical R&D.

Nat Rev Drug Discov 2014 Apr;13(4):239-40

IMIM and Universitat Pompeu Fabra, Dr. Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1038/nrd4290DOI Listing
April 2014

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain.

Hum Mutat 2012 Nov 23;33(11):1503-12. Epub 2012 Jul 23.

Department of Pharmacy, School of Health Sciences, University of Patras, Patras, Greece.

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http://dx.doi.org/10.1002/humu.22144DOI Listing
November 2012

Open PHACTS: semantic interoperability for drug discovery.

Drug Discov Today 2012 Nov 7;17(21-22):1188-98. Epub 2012 Jun 7.

Royal Society of Chemistry, ChemSpider, US Office, Wake Forest, NC 27587, USA.

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http://dx.doi.org/10.1016/j.drudis.2012.05.016DOI Listing
November 2012

Solving bottlenecks in data sharing in the life sciences.

Hum Mutat 2012 Oct 18;33(10):1494-6. Epub 2012 Jun 18.

Department of Genetics, University of Leicester, Leicester, United Kingdom.

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http://dx.doi.org/10.1002/humu.22123DOI Listing
October 2012

In silico knowledge and content tracking.

Methods Mol Biol 2011 ;760:129-40

Department of Human Genetics, University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1007/978-1-61779-176-5_8DOI Listing
November 2011

The value of data.

Nat Genet 2011 Mar 29;43(4):281-3. Epub 2011 Mar 29.

Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.

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http://www.nature.com/doifinder/10.1038/ng0411-281
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http://dx.doi.org/10.1038/ng0411-281DOI Listing
March 2011

Novel protein-protein interactions inferred from literature context.

PLoS One 2009 Nov 18;4(11):e7894. Epub 2009 Nov 18.

Biosemantics Association, Department of Human Genetics, Leiden University Medical Center, Leiden, and Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007894PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774517PMC
November 2009

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.

BMC Bioinformatics 2008 Jun 24;9:291. Epub 2008 Jun 24.

Department of Medical Informatics, Erasmus MC University Medical Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1186/1471-2105-9-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459190PMC
June 2008

Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE.

Proteomics 2007 Mar;7(6):921-31

Biosemantics Group, Medical Informatics Department, Erasmus Medical Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1002/pmic.200600693DOI Listing
March 2007

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation.

BMC Bioinformatics 2007 Jan 18;8:14. Epub 2007 Jan 18.

Department of Medical Informatics, Erasmus MC--University Medical Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1186/1471-2105-8-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1784107PMC
January 2007

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.

J Biomed Inform 2007 Jun 24;40(3):316-24. Epub 2006 Sep 24.

Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P.O. Box 1738, 3000 DR, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.jbi.2006.09.002DOI Listing
June 2007

Online tools to support literature-based discovery in the life sciences.

Brief Bioinform 2005 Sep;6(3):277-86

Department of Medical Informatics, Erasmus MC - University Medical Center Rotterdam, PO Box 1738, 3000 DR Rotterdam, The Netherlands.

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https://pdfs.semanticscholar.org/6bd0/97b315299e543d74929915
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http://dx.doi.org/10.1093/bib/6.3.277DOI Listing
September 2005

Databases for knowledge discovery. Examples from biomedicine and health care.

Int J Med Inform 2006 Mar-Apr;75(3-4):257-67. Epub 2005 Sep 29.

Department of Medical Informatics, Erasmus University and Erasmus MC Rotterdam, Dr. Molewaterplein 50, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.ijmedinf.2005.08.012DOI Listing
August 2006

Thesaurus-based disambiguation of gene symbols.

BMC Bioinformatics 2005 Jun 16;6:149. Epub 2005 Jun 16.

Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands.

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http://dx.doi.org/10.1186/1471-2105-6-149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1183190PMC
June 2005

Word sense disambiguation in the biomedical domain: an overview.

J Comput Biol 2005 Jun;12(5):554-65

Biosemantics Group, Medical Informatics Department, Erasmus Medical Center, Dr. Molewaterplein 50, 3015 GE, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1089/cmb.2005.12.554DOI Listing
June 2005

Which gene did you mean?

Authors:
Barend Mons

BMC Bioinformatics 2005 Jun 7;6:142. Epub 2005 Jun 7.

Biosemantics Group Rotterdam, Department of Medical Informatics, Erasmus MC - University Medical Center Rotterdam, P,O, Box 1738, NL-3000 DR Rotterdam, the Netherlands.

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http://dx.doi.org/10.1186/1471-2105-6-142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1173089PMC
June 2005

Contextual annotation of web pages for interactive browsing.

Stud Health Technol Inform 2004 ;107(Pt 1):94-8

Dept. of Medical Informatics, Erasmus University Medical Center Rotterdam, PO Box 1738, 3000 DR Rotterdam, The Netherlands.

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June 2005

Using contextual queries.

AMIA Annu Symp Proc 2003 :998

Dept of Medical Informatics, Erasmus University MC Rotterdam, The Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1480126PMC
December 2004

Mining microarray datasets aided by knowledge stored in literature.

AMIA Annu Symp Proc 2003 :879

Department of Medical Informatics, Erasmus MC, Rotterdam, The Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1480300PMC
December 2004

Research for research: tools for knowledge discovery and visualization.

Proc AMIA Symp 2002 :835-9

Department of Medical Informatics, Erasmus University Rotterdam, Rotterdam, The Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244229PMC
April 2003