Barbara J Trask

Barbara J Trask

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Barbara J Trask

Barbara J Trask

Publications by authors named "Barbara J Trask"

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Comparative genomic hybridization to detect variation in the copy number of large DNA segments.

Cold Spring Harb Protoc 2011 Nov 1;2011(11):1323-33. Epub 2011 Nov 1.

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http://dx.doi.org/10.1101/pdb.top066589DOI Listing
November 2011

Rigorous and thorough bioinformatic analyses of olfactory receptor promoters confirm enrichment of O/E and homeodomain binding sites but reveal no new common motifs.

BMC Genomics 2011 Nov 15;12:561. Epub 2011 Nov 15.

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1186/1471-2164-12-561DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3247239PMC
November 2011

Extreme variability among mammalian V1R gene families.

Genome Res 2010 Jan 1;20(1):10-8. Epub 2009 Dec 1.

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1101/gr.098913.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798821PMC
January 2010

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content.

Nature 2010 Jan 13;463(7280):536-9. Epub 2010 Jan 13.

Howard Hughes Medical Institute, Whitehead Institute, and Department of Biology, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature08700DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3653425PMC
January 2010

Tissue-specific variation in DNA methylation levels along human chromosome 1.

Epigenetics Chromatin 2009 Jun 8;2(1). Epub 2009 Jun 8.

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

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http://dx.doi.org/10.1186/1756-8935-2-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2706828PMC
June 2009

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.

Genome Res 2009 Jan 24;19(1):33-41. Epub 2008 Oct 24.

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1101/gr.083170.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612970PMC
January 2009

Extensive copy-number variation of the human olfactory receptor gene family.

Am J Hum Genet 2008 Aug;83(2):228-42

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1016/j.ajhg.2008.07.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2495065PMC
August 2008

Human subtelomeric WASH genes encode a new subclass of the WASP family.

PLoS Genet 2007 Dec;3(12):e237

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

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http://dx.doi.org/10.1371/journal.pgen.0030237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151093PMC
December 2007

V2R gene families degenerated in primates, dog and cow, but expanded in opossum.

Trends Genet 2007 May 26;23(5):212-5. Epub 2007 Mar 26.

Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, C3-168, Seattle, WA 98109 USA.

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http://dx.doi.org/10.1016/j.tig.2007.03.004DOI Listing
May 2007

Elevated rates of sister chromatid exchange at chromosome ends.

PLoS Genet 2007 Feb;3(2):e32

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0030032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1802831PMC
February 2007

Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.

Nature 2005 Sep;437(7055):94-100

Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North C3-168, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1038/nature04029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1368961PMC
September 2005

Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs.

Genome Res 2005 Feb 14;15(2):231-40. Epub 2005 Jan 14.

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.3339905
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http://dx.doi.org/10.1101/gr.3339905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546524PMC
February 2005

Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes.

Cancer Res 2004 Dec;64(23):8541-9

Division of Human Biology, Division of Public Health Sciences, and Genomics Shared Resource, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-04-1992DOI Listing
December 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Species specificity in rodent pheromone receptor repertoires.

Genome Res 2004 Apr;14(4):603-8

Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, Connecticut 06459, USA.

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http://dx.doi.org/10.1101/gr.2117004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383304PMC
April 2004

Complex evolution of 7E olfactory receptor genes in segmental duplications.

Genome Res 2003 May;13(5):781-93

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1101/gr.769003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430936PMC
May 2003

Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions.

Genome Res 2002 Nov;12(11):1663-72

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109-1024, USA.

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http://dx.doi.org/10.1101/gr.338402DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC187549PMC
November 2002

Human cytogenetics: 46 chromosomes, 46 years and counting.

Authors:
Barbara J Trask

Nat Rev Genet 2002 10;3(10):769-78

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1038/nrg905DOI Listing
October 2002

Short inverted repeats initiate gene amplification through the formation of a large DNA palindrome in mammalian cells.

Proc Natl Acad Sci U S A 2002 Jun 11;99(13):8772-7. Epub 2002 Jun 11.

Division of Basic Sciences and Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109-1024, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.132275999
Publisher Site
http://dx.doi.org/10.1073/pnas.132275999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC124374PMC
June 2002

The sense of smell: genomics of vertebrate odorant receptors.

Hum Mol Genet 2002 May;11(10):1153-60

Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N., C3-168, PO Box 19024, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1093/hmg/11.10.1153DOI Listing
May 2002

Different evolutionary processes shaped the mouse and human olfactory receptor gene families.

Hum Mol Genet 2002 Mar;11(5):535-46

Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N., C3-168, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1093/hmg/11.5.535DOI Listing
March 2002

The complex structure and dynamic evolution of human subtelomeres.

Nat Rev Genet 2002 Feb;3(2):91-102

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1038/nrg727DOI Listing
February 2002

Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor alpha/delta loci.

Genome Res 2002 Jan;12(1):81-7

Department of Molecular Biotechnology, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.197901DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC155264PMC
January 2002