Barbara E Engelhardt

Barbara E Engelhardt

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Barbara E Engelhardt

Barbara E Engelhardt

Publications by authors named "Barbara E Engelhardt"

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27Publications

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Statistical tests for detecting variance effects in quantitative trait studies.

Bioinformatics 2019 01;35(2):200-210

Department of Computer Science, Princeton University, Princeton, NJ, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6330007PMC
January 2019

An Optimal Policy for Patient Laboratory Tests in Intensive Care Units.

Pac Symp Biocomput 2019 ;24:320-331

Department of Electrical Engineering, Princeton University, USA*These authors contributed equally to this work.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417830PMC
January 2019

Bayesian nonparametric discovery of isoforms and individual specific quantification.

Nat Commun 2018 04 27;9(1):1681. Epub 2018 Apr 27.

Department of Computer Science, Princeton University, Princeton, NJ, 08540, USA.

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http://dx.doi.org/10.1038/s41467-018-03402-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5923247PMC
April 2018

Clustering gene expression time series data using an infinite Gaussian process mixture model.

PLoS Comput Biol 2018 01 16;14(1):e1005896. Epub 2018 Jan 16.

Department of Computer Science, Princeton University, Princeton, New Jersey, United States of America.

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https://dx.plos.org/10.1371/journal.pcbi.1005896
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http://dx.doi.org/10.1371/journal.pcbi.1005896DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5786324PMC
January 2018

Expandable factor analysis.

Biometrika 2017 Sep 16;104(3):649-663. Epub 2017 Jun 16.

Department of Statistical Science, Duke University, Box 90251, Durham, North Carolina 27708,

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http://dx.doi.org/10.1093/biomet/asx030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793687PMC
September 2017

Detecting differential growth of microbial populations with Gaussian process regression.

Genome Res 2017 02 18;27(2):320-333. Epub 2016 Nov 18.

Program in Computational Biology and Bioinformatics, Duke University, Durham, North Carolina 27708, USA.

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http://dx.doi.org/10.1101/gr.210286.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5287237PMC
February 2017

Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering.

PLoS Comput Biol 2016 07 28;12(7):e1004791. Epub 2016 Jul 28.

Department of Computer Science, Center for Statistics and Machine Learning, Princeton University, Princeton, New Jersey, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004791DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965098PMC
July 2016

Meta-analysis of Genome-Wide Association Studies for Extraversion: Findings from the Genetics of Personality Consortium.

Authors:
Stéphanie M van den Berg Marleen H M de Moor Karin J H Verweij Robert F Krueger Michelle Luciano Alejandro Arias Vasquez Lindsay K Matteson Jaime Derringer Tõnu Esko Najaf Amin Scott D Gordon Narelle K Hansell Amy B Hart Ilkka Seppälä Jennifer E Huffman Bettina Konte Jari Lahti Minyoung Lee Mike Miller Teresa Nutile Toshiko Tanaka Alexander Teumer Alexander Viktorin Juho Wedenoja Abdel Abdellaoui Goncalo R Abecasis Daniel E Adkins Arpana Agrawal Jüri Allik Katja Appel Timothy B Bigdeli Fabio Busonero Harry Campbell Paul T Costa George Davey Smith Gail Davies Harriet de Wit Jun Ding Barbara E Engelhardt Johan G Eriksson Iryna O Fedko Luigi Ferrucci Barbara Franke Ina Giegling Richard Grucza Annette M Hartmann Andrew C Heath Kati Heinonen Anjali K Henders Georg Homuth Jouke-Jan Hottenga William G Iacono Joost Janzing Markus Jokela Robert Karlsson John P Kemp Matthew G Kirkpatrick Antti Latvala Terho Lehtimäki David C Liewald Pamela A F Madden Chiara Magri Patrik K E Magnusson Jonathan Marten Andrea Maschio Hamdi Mbarek Sarah E Medland Evelin Mihailov Yuri Milaneschi Grant W Montgomery Matthias Nauck Michel G Nivard Klaasjan G Ouwens Aarno Palotie Erik Pettersson Ozren Polasek Yong Qian Laura Pulkki-Råback Olli T Raitakari Anu Realo Richard J Rose Daniela Ruggiero Carsten O Schmidt Wendy S Slutske Rossella Sorice John M Starr Beate St Pourcain Angelina R Sutin Nicholas J Timpson Holly Trochet Sita Vermeulen Eero Vuoksimaa Elisabeth Widen Jasper Wouda Margaret J Wright Lina Zgaga David Porteous Alessandra Minelli Abraham A Palmer Dan Rujescu Marina Ciullo Caroline Hayward Igor Rudan Andres Metspalu Jaakko Kaprio Ian J Deary Katri Räikkönen James F Wilson Liisa Keltikangas-Järvinen Laura J Bierut John M Hettema Hans J Grabe Brenda W J H Penninx Cornelia M van Duijn David M Evans David Schlessinger Nancy L Pedersen Antonio Terracciano Matt McGue Nicholas G Martin Dorret I Boomsma

Behav Genet 2016 Mar 11;46(2):170-82. Epub 2015 Sep 11.

Department of Biological Psychology, VU University Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1007/s10519-015-9735-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751159PMC
March 2016

Diving deeper to predict noncoding sequence function.

Nat Methods 2015 Oct;12(10):925-6

Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

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http://www.nature.com/articles/nmeth.3604
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http://dx.doi.org/10.1038/nmeth.3604DOI Listing
October 2015

Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.

Authors:
Marleen H M de Moor Stéphanie M van den Berg Karin J H Verweij Robert F Krueger Michelle Luciano Alejandro Arias Vasquez Lindsay K Matteson Jaime Derringer Tõnu Esko Najaf Amin Scott D Gordon Narelle K Hansell Amy B Hart Ilkka Seppälä Jennifer E Huffman Bettina Konte Jari Lahti Minyoung Lee Mike Miller Teresa Nutile Toshiko Tanaka Alexander Teumer Alexander Viktorin Juho Wedenoja Goncalo R Abecasis Daniel E Adkins Arpana Agrawal Jüri Allik Katja Appel Timothy B Bigdeli Fabio Busonero Harry Campbell Paul T Costa George Davey Smith Gail Davies Harriet de Wit Jun Ding Barbara E Engelhardt Johan G Eriksson Iryna O Fedko Luigi Ferrucci Barbara Franke Ina Giegling Richard Grucza Annette M Hartmann Andrew C Heath Kati Heinonen Anjali K Henders Georg Homuth Jouke-Jan Hottenga William G Iacono Joost Janzing Markus Jokela Robert Karlsson John P Kemp Matthew G Kirkpatrick Antti Latvala Terho Lehtimäki David C Liewald Pamela A F Madden Chiara Magri Patrik K E Magnusson Jonathan Marten Andrea Maschio Sarah E Medland Evelin Mihailov Yuri Milaneschi Grant W Montgomery Matthias Nauck Klaasjan G Ouwens Aarno Palotie Erik Pettersson Ozren Polasek Yong Qian Laura Pulkki-Råback Olli T Raitakari Anu Realo Richard J Rose Daniela Ruggiero Carsten O Schmidt Wendy S Slutske Rossella Sorice John M Starr Beate St Pourcain Angelina R Sutin Nicholas J Timpson Holly Trochet Sita Vermeulen Eero Vuoksimaa Elisabeth Widen Jasper Wouda Margaret J Wright Lina Zgaga David Porteous Alessandra Minelli Abraham A Palmer Dan Rujescu Marina Ciullo Caroline Hayward Igor Rudan Andres Metspalu Jaakko Kaprio Ian J Deary Katri Räikkönen James F Wilson Liisa Keltikangas-Järvinen Laura J Bierut John M Hettema Hans J Grabe Cornelia M van Duijn David M Evans David Schlessinger Nancy L Pedersen Antonio Terracciano Matt McGue Brenda W J H Penninx Nicholas G Martin Dorret I Boomsma

JAMA Psychiatry 2015 Jul;72(7):642-50

Department of Biological Psychology, VU University Amsterdam, Amsterdam, the Netherlands.

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http://dx.doi.org/10.1001/jamapsychiatry.2015.0554DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4667957PMC
July 2015

Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure.

Proc Natl Acad Sci U S A 2015 Jun 12;112(26):E3441-50. Epub 2015 Jun 12.

Department of Computer Science, Center for Statistics and Machine Learning, Princeton University, Princeton, NJ 08540

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http://dx.doi.org/10.1073/pnas.1412301112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4491772PMC
June 2015

Mangravite et al. reply.

Nature 2014 Sep;513(7518):E3

Children's Hospital Research Institute, Oakland, California 94609, USA.

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http://dx.doi.org/10.1038/nature13630DOI Listing
September 2014

Genome-scale phylogenetic function annotation of large and diverse protein families.

Genome Res 2011 Nov 22;21(11):1969-80. Epub 2011 Jul 22.

Electrical Engineering and Computer Science Department, University of California, Berkeley, California 94720, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.104687.109
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http://dx.doi.org/10.1101/gr.104687.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3205580PMC
November 2011

Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.

PLoS Genet 2010 Sep 16;6(9):e1001117. Epub 2010 Sep 16.

Computer Science Department, University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1371/journal.pgen.1001117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940725PMC
September 2010

Phylogenetic molecular function annotation.

J Phys Conf Ser 2009 ;180(1):12024

EECS Department, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1088/1742-6596/180/1/012024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909777PMC
January 2009

Protein molecular function prediction by Bayesian phylogenomics.

PLoS Comput Biol 2005 Oct 7;1(5):e45. Epub 2005 Oct 7.

Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.0010045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1246806PMC
October 2005