Publications by authors named "Augustin Luna"

38Publications

Systems biology graphical notation markup language (SBGNML) version 0.3.

J Integr Bioinform 2020 Jun 22;17(2-3). Epub 2020 Jun 22.

cBio Center, Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.

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http://dx.doi.org/10.1515/jib-2020-0016DOI Listing
June 2020

LLGL2 rescues nutrient stress by promoting leucine uptake in ER breast cancer.

Nature 2019 05 17;569(7755):275-279. Epub 2019 Apr 17.

Department of Medicine, Cancer Research Institute, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.

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http://www.nature.com/articles/s41586-019-1126-2
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http://dx.doi.org/10.1038/s41586-019-1126-2DOI Listing
May 2019

A Landscape of Metabolic Variation across Tumor Types.

Cell Syst 2018 Mar 27;6(3):301-313.e3. Epub 2018 Jan 27.

cBio Center, Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Computational Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2017.12.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5876114PMC
March 2018

PaxtoolsR: pathway analysis in R using Pathway Commons.

Bioinformatics 2016 04 18;32(8):1262-4. Epub 2015 Dec 18.

Computational Biology Center, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv733DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824129PMC
April 2016

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R.

Bioinformatics 2016 04 3;32(8):1272-4. Epub 2015 Dec 3.

Developmental Therapeutic Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907377PMC
April 2016

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response.

PLoS Comput Biol 2015 May 28;11(5):e1004144. Epub 2015 May 28.

Laboratory of Molecular Pharmacology, National Cancer Institute, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462596PMC
May 2015

Alterations of DNA repair genes in the NCI-60 cell lines and their predictive value for anticancer drug activity.

DNA Repair (Amst) 2015 Apr 11;28:107-15. Epub 2015 Feb 11.

Developmental Therapeutics Branch and Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15687864150002
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http://dx.doi.org/10.1016/j.dnarep.2015.01.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4385398PMC
April 2015

SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism.

Genome Integr 2013 Dec 20;4(1). Epub 2013 Dec 20.

Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://genomeintegrity.biomedcentral.com/articles/10.1186/20
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http://dx.doi.org/10.1186/2041-9414-4-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3898398PMC
December 2013

PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways.

Bioinformatics 2013 Jun 1;29(11):1465-6. Epub 2013 Apr 1.

Computer Engineering, University of Maryland, College Park, MD 20740, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661049PMC
June 2013

Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes.

PLoS One 2012 3;7(5):e35716. Epub 2012 May 3.

Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, Maryland, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035716PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3343048PMC
January 2013

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.

Bioinformatics 2012 Mar 22;28(6):889-90. Epub 2011 Dec 22.

Keshav Memorial Institute of Technology, Hyderabad, Andhra Pradesh, India.

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http://dx.doi.org/10.1093/bioinformatics/btr694DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307104PMC
March 2012

PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).

Bioinformatics 2011 Aug 2;27(15):2165-6. Epub 2011 Jun 2.

Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://bioinformatics.oxfordjournals.org/content/early/2011/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btr336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3137219PMC
August 2011

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method.

BMC Bioinformatics 2011 May 17;12:167. Epub 2011 May 17.

Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-12-167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118169PMC
May 2011

The BioPAX community standard for pathway data sharing.

Nat Biotechnol 2010 Sep 9;28(9):935-42. Epub 2010 Sep 9.

Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.1666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001121PMC
September 2010

snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package.

Bioinformatics 2007 Mar 18;23(6):774-6. Epub 2007 Jan 18.

GCAP/CBDB, NIMH/NIH, 10 Center Drive, Room 4S-235, Bethesda, MD 20814, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btl657DOI Listing
March 2007