Audrey Kauffmann

Audrey Kauffmann

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Audrey Kauffmann

Audrey Kauffmann

Publications by authors named "Audrey Kauffmann"

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33Publications

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Correction of copy number induced false positives in CRISPR screens.

PLoS Comput Biol 2018 07 19;14(7):e1006279. Epub 2018 Jul 19.

Novartis Institutes for Biomedical Research, Basel, Switzerland.

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http://dx.doi.org/10.1371/journal.pcbi.1006279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6067744PMC
July 2018

Project DRIVE: A Compendium of Cancer Dependencies and Synthetic Lethal Relationships Uncovered by Large-Scale, Deep RNAi Screening.

Cell 2017 Jul;170(3):577-592.e10

Novartis Institutes for Biomedical Research, Oncology Disease Area, Basel 4002, Switzerland; Cambridge, MA 02139, USA; and Emeryville, CA 94608, USA.

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http://dx.doi.org/10.1016/j.cell.2017.07.005DOI Listing
July 2017

Prognostic value of PLAGL1-specific CpG site methylation in soft-tissue sarcomas.

PLoS One 2013 15;8(11):e80741. Epub 2013 Nov 15.

Institut Bergonié, Comprehensive Cancer Centre, Bordeaux, France ; Univ. Bordeaux, Bordeaux, France ; INSERM U916 VINCO, Bordeaux, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0080741PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3829972PMC
August 2014

Characterization of the novel and specific PI3Kα inhibitor NVP-BYL719 and development of the patient stratification strategy for clinical trials.

Mol Cancer Ther 2014 May 7;13(5):1117-29. Epub 2014 Mar 7.

Authors' Affiliations: Novartis Institutes for BioMedical Research, Disease Area Oncology; Novartis Institutes for BioMedical Research, Global Discovery Chemistry; Novartis Institutes for BioMedical Research, Center for Proteomic Chemistry; Novartis Pharma AG, Oncology Translational Medicine, Basel, Switzerland; Novartis Pharma AG, Oncology Translational Medicine; Novartis Institutes for BioMedical Research, Developmental and Molecular Pathways, Cambridge, Massachusetts; and Novartis Institutes for BioMedical Research, Developmental and Molecular Pathways, Shangai, China.

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http://dx.doi.org/10.1158/1535-7163.MCT-13-0865DOI Listing
May 2014

Pan-PIM kinase inhibition provides a novel therapy for treating hematologic cancers.

Clin Cancer Res 2014 Apr 28;20(7):1834-45. Epub 2014 Jan 28.

Authors' Affiliations: Oncology Disease Area Research; Global Discovery Chemistry/Oncology and Exploratory Chemistry; MAP Group; Chemical and Pharmaceutical Profiling Group, Novartis Institutes for Biomedical Research, Emeryville, California; Developmental Molecular Pathways, Novartis Institutes for Biomedical Research, Cambridge, Massachusetts; Oncology Disease Area Research; and Center for Proteomic Chemistry, Novartis Institutes for Biomedical Research, Basel, Switzerland.

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http://dx.doi.org/10.1158/1078-0432.CCR-13-2062DOI Listing
April 2014

Gene expression signature predicting high-grade prostate cancer responses to oxaliplatin.

Mol Pharmacol 2012 Dec 17;82(6):1205-16. Epub 2012 Sep 17.

NSERM U916, Institut Bergonié and Université de Bordeaux, France

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http://dx.doi.org/10.1124/mol.112.080333DOI Listing
December 2012

Contributions of the EMERALD project to assessing and improving microarray data quality.

Biotechniques 2011 Jan;50(1):27-31

Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.

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https://www.future-science.com/doi/10.2144/000113591
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http://dx.doi.org/10.2144/000113591DOI Listing
January 2011

Microarray data quality control improves the detection of differentially expressed genes.

Genomics 2010 Mar 14;95(3):138-42. Epub 2010 Jan 14.

EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.

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http://dx.doi.org/10.1016/j.ygeno.2010.01.003DOI Listing
March 2010

Importing ArrayExpress datasets into R/Bioconductor.

Bioinformatics 2009 Aug 8;25(16):2092-4. Epub 2009 Jun 8.

EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btp354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723004PMC
August 2009

Candidate genes on chromosome 9q33-34 involved in the progression of childhood ependymomas.

J Clin Oncol 2009 Apr 16;27(11):1884-92. Epub 2009 Mar 16.

Department of Neurosurgery, Peter B Dirks, Christian Sainte-Rose, and Gilles Vassal Hôpital Necker Enfants Malades, Université Paris Descartes, France.

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http://dx.doi.org/10.1200/JCO.2007.15.4195DOI Listing
April 2009

arrayQualityMetrics--a bioconductor package for quality assessment of microarray data.

Bioinformatics 2009 Feb 23;25(3):415-6. Epub 2008 Dec 23.

EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btn647DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639074PMC
February 2009

Overexpression of DNA repair genes is associated with metastasis: a new hypothesis.

Mutat Res 2008 Jul-Aug;659(1-2):49-55. Epub 2008 Jan 16.

Genomes and Cancers, FRE2939-CNRS, Institute Gustave Roussy, PR2, 39 rue Camille Desmoulins, 94805 Villejuif, France.

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http://linkinghub.elsevier.com/retrieve/pii/S138357420800003
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http://dx.doi.org/10.1016/j.mrrev.2007.12.002DOI Listing
September 2008

Excitability of the Clay model for squid giant axon.

Biosystems 2003 Sep;71(1-2):157-67

Inserm U444, Faculté de Médecine Saint-Antoine 27, rue Chaligny, 75571 Paris Cedex 12, France.

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http://dx.doi.org/10.1016/s0303-2647(03)00123-0DOI Listing
September 2003